Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_017825.1 Length=36711 Score E Sequences producing significant alignments: (Bits) Value seq4931 154 3e-33 >seq4931 Length=27746 Score = 154 bits (170), Expect = 3e-33 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 19272 TGTATTACAACAGTACTGGCAATATGGGGGTGCTGGCTGGTCAGGCCTCACAGCTGAATG 19331 ||| ||| ||||||| | ||||| |||| || | || ||||| | |||||||| |||| Sbjct 16194 TGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATG 16253 Query 19332 CTGTGGTCGACTTGCAAGACAGAAACACCGAGCTGTCATACCAGCTCTTGCTTGACTCTT 19391 |||| ||||| | ||||||||||| || || ||||||| ||||| || | || || Sbjct 16254 CTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATT 16313 Query 19392 TGGGTGACAGAACCCGGTATTTCAGTATGTGGAATCAGGCGGTGGACAGTTATGATCCTG 19451 | || ||||| || |||| ||| |||||||||| || ||||| |||||||| | Sbjct 16314 TACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAG 16373 Query 19452 ATGTGCGCATTATTGAAAACCATGGTGTGGAAGACGAACTTCCCAACTATTGCTTCCC 19509 | || || || || || || ||| || |||||||||||||| || |||||||| || Sbjct 16374 AGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Score = 141 bits (156), Expect = 2e-29 Identities = 820/1330 (62%), Gaps = 10/1330 (1%) Strand=Plus/Plus Query 19808 CTGGTGGACGCCTACATCAACATCGGGGCGCGCTGGTCGCTGGACCCCATGGACAACGTC 19867 ||||| || | || |||||||| || | | ||||| | || ||||||| || Sbjct 16700 CTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTT 16759 Query 19868 AATCCCTTCAACCACCACCGCAACGCGGGCCTGCGCTACCGCTCCATGCTCCTGGGCAAC 19927 ||||| || || || ||| | || | || || | ||| | || ||| | || || Sbjct 16760 AATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAAT 16819 Query 19928 GGGCGCTACGTGCCCTTCCACATCCAGGTGCCCCAGAAATTTTTCGCCATCAAGAGCCTC 19987 || ||||| | |||| || || ||||| || || || ||||| || | || || | Sbjct 16820 GGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTG 16879 Query 19988 CTGCTCCTGCCCGGGTCCTACACCTACGAGTGGAACTTCCGCAAGGACGTCAACATGATC 20047 || || || || || || |||| ||||| ||| || | || || || |||||||| Sbjct 16880 CTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATT 16939 Query 20048 CTGCAGAGCTCCCTCGGCAACGACCTGCGCACGGACGGGGCCTCCATCTCCTTCACCAGC 20107 ||||||| | || ||||| || ||| | |||||| || || | | || |||| Sbjct 16940 TTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGC 16999 Query 20108 ATCAACCTCTACGCCACCTTCTTCCCCATGGCGCACAACACGGCCTCCACGCTCGAGGCC 20167 || | ||| | || || ||||| || ||| | || ||||| || || || || || | Sbjct 17000 ATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACT 17059 Query 20168 ATGCTGCGCAACGACACCAACGACCAGTCCTTCAACGACTACCTCTCGGNNNNNNNNNNN 20227 ||||| ||||| || ||||| ||||||||| |||||| || || Sbjct 17060 ATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATG 17119 Query 20228 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCATCTCCATCCCCTCGCGCAACTGG 20287 |||| ||||| || || | | || ||| Sbjct 17120 CTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGG 17179 Query 20288 GCCGCCTTCCGCGGCTGGTCCTTCACGCGCCTCAAGACCA-AGGAGACGCCCTCGCTGGG 20346 || ||||| | || ||| | || || | || || || | |||| || || | | || Sbjct 17180 GCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAA-ACAACAGGAAACACCAACCATTGG 17238 Query 20347 CTCCGGGTTCGACCCCTACTTCGTCTACTCGGGCTCCATCCCCTACCTCGACGGNNNNNN 20406 ||| | || ||||| ||||| ||||||||||| ||||| || || | Sbjct 17239 CTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTT 17298 Query 20407 NNNNNNNNNNNNNNNNNNNAAGAAGGTCTCCATCACCTTCGACTCCTCCGTCAGCTGGCC 20466 | ||||| |||| || || || || || || ||||| Sbjct 17299 TTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCC 17358 Query 20467 CGGCAACGACCGGCTCCTGACGCCCAACGAGTTCGAAATCAAGCGCACCGTCGACGGCGA 20526 || || ||| | || | | || || || || | || || | || |||| || Sbjct 17359 TGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGA 17418 Query 20527 GGGATACAACGTGGCCCAGTGCAACATGACCAAGGACTGGTTCCTGGTCCAGATGCTGGC 20586 || || ||| | ||| ||| || || ||||| |||| || | || ||||| || Sbjct 17419 AGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGC 17478 Query 20587 CCACTACAACATCGGCTACCAGGGCTTCTACGTGCCCGAGGGCTACAAGGACCGCATGTA 20646 |||||||| ||||| ||||| || || || | ||| | || || || | |||| Sbjct 17479 TCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTA 17538 Query 20647 CTCCTTCTTCCGCAACTTCCAGCCCATGAGCCGCCAGGTGGTGGA-CGAGGTCA-ACTAC 20704 ||||| || | || || | |||||| | | || || ||||| | ||| | || Sbjct 17539 TTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGA 17598 Query 20705 AAGGACTACCAGGCCGTCACCCTGGCCTACCAGCACAACAACTCGGGCTTCGTCGGCTAC 20764 || | || || |||| | || || ||||| || || || || || | | Sbjct 17599 AA--AATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCAT 17656 Query 20765 CTCGCGCCCACCATGCGCCAGGGCCAGCCCTACCCCGCCAACTACCCGTACCCGCTCATC 20824 | ||| ||| || ||||| || || ||| |||| || | |||||||||| Sbjct 17657 TATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATC 17716 Query 20825 GGC-AAGAGCGCCGTCACCAGCGTCACCCAGAAAAAGTTCCTCTGCGACAGGGTCATGTG 20883 || || || || | | | | | || |||| ||| || | || ||||| |||| Sbjct 17717 GGAGAACAG-GCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTG 17775 Query 20884 GCGCATCCCCTTCTCCAGCAACTTCATGTCCATGGGCGCGCTCACCGACCTCGGCCAGAA 20943 | | || || |||||| |||||| ||||||||||| | || || || || || || || Sbjct 17776 GAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAA 17835 Query 20944 CATGCTCTATGCCAACTCCGCCCACGCGCTAGACATGAATTTCGAAGTCGACCCCATGGA 21003 |||| ||||| || || || || || ||||||||| ||||||| || | ||||| Sbjct 17836 TTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGA 17895 Query 21004 TGAGTCCACCCTTCTCTATGTTG-TCTTCGANNNNNNNNNNNNNNNCCGAGTGCACCAGC 21062 || | || |||| ||| || | || || | ||||||| |||| Sbjct 17896 GGAACCAACTTATCTC-ATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGC 17954 Query 21063 CCCACCGCGGCGTCATCGAGGCCGTCTACCTGCGCACCCCCTTCTCGGCCGGTAACGCCA 21122 | || || || ||||| || | | || || | |||||||| ||||| ||||||||| Sbjct 17955 CTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCG 18014 Query 21123 CCACCTAAAT 21132 | || ||||| Sbjct 18015 CAACATAAAT 18024 Score = 80.6 bits (88), Expect = 6e-11 Identities = 125/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 18299 AAGATGGCCACCCCATCGATGCTGCCCCAGTGGGCGTACATGCACATCGCCGGACAGGAC 18358 ||||||||||| || |||||||| || || ||| | ||| | || ||||| ||||| || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18359 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTCGCCCGCGCCACAGACACCTACTTC 18418 ||||| || || | ||| | || || || || |||| || || || ||||| Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430 Query 18419 AGTCTGGGGAACAAGTTTAGGAACCCCACGGTGGCGCCCACGCACGATGTGACCACCGA 18477 || | | || ||||| || || ||||| ||||| || |||||||| || || || Sbjct 15431 TCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117262748730218