Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq190 113 1e-20
seq4931 102 2e-17
seq113 102 2e-17
>seq190
Length=3085523
Score = 113 bits (124), Expect = 1e-20
Identities = 181/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024
||| || ||||| ||| ||||||| | || || || || || || | || |||||
Sbjct 695485 TGGGTGCTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCATCGATGT 695426
Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084
|| |||||||| || ||| ||| | |||||| || ||||||||| | || || |||||
Sbjct 695425 AGGAGCTGGTGTCATAGATGAAGATTATAGGGGAAATGTTGGTGTTATATTGTTCAATTT 695366
Query 1085 TAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGAAAA 1144
| | | || ||| | | || |||||| | ||||||||| | ||||||||| |
Sbjct 695365 TGACAAAGAGAAATTTGAAGTGAAAAAGGGTGATGGAATTGCTCAGCTCATTTGTGAACA 695306
Query 1145 GGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTCTGC 1204
|| | ||| |||| ||| || ||| | ||| || ||| | ||||||||||| |
Sbjct 695305 GGTTTTTTATCCAGAAATTGAAGAAGTTCAAGTCTTGGATGATACTGAAAGGGGTTCAGG 695246
Query 1205 AGGATTTGGGTCTACCGGAA 1224
||| || || || || ||||
Sbjct 695245 AGGTTTGGGTTCCACTGGAA 695226
>seq4931
Length=27746
Score = 102 bits (112), Expect = 2e-17
Identities = 181/264 (69%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 18829 GGAGCTAGGTGGTCCGTAGATCAGATGGATAATGTAAATCCATTTAACCACCACCGTAAT 18888
||| | |||||||| ||||| |||||| | || ||||||||||| || ||| | |||
Sbjct 16724 GGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAAT 16783
Query 18889 TGGGGATTAAAGTATAGGTCTCAGTTACTAGGTAATAGTAGATACTGTAATTTTCACATT 18948
|| || | ||| ||||||||| || |||| ||| || | || | ||||| |||
Sbjct 16784 ACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATT 16843
Query 18949 CAGGTACCTCAAAAGTATTTCGCGATTAAAAATCTACTGTTACTTCCTGGCTCATATACG 19008
||||| || ||||||| ||| || |||||| | | || | || || || || || |
Sbjct 16844 CAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGT 16903
Query 19009 TATGAGTGGGTACTAAGGAAGGATCCTAACATGATTTTACAATCAAGTTTAGGTAATGAC 19068
|| || ||| | || || ||| ||||||||||| || | | | || |||||
Sbjct 16904 TACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGAT 16963
Query 19069 TTGAGAATAGATGGAGCATCCGTA 19092
|||| || ||||| || |||
Sbjct 16964 CTGAGGGAGGACGGAGCGTCAGTA 16987
>seq113
Length=6198913
Score = 102 bits (112), Expect = 2e-17
Identities = 181/263 (69%), Gaps = 1/263 (0%)
Strand=Plus/Minus
Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024
||| || ||||| ||| ||||||| | | || || || || || | ||||||||
Sbjct 4702190 TGGGTGCTATGGAAGAGTAGCTCCACGTTTTGGCTTGGCTGCAAAACACTTCATTGATGT 4702131
Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084
|| |||||||| || ||| ||| | |||||| || |||||||| | || | |||||
Sbjct 4702130 AGGAGCTGGTGTCATAGATGAAGATTATAGGGGAAATTTTGGTGTTATATTGCTCAATTT 4702071
Query 1085 TAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGAAAA 1144
| || | || ||| | | || |||||| | ||||||||| | ||| |||| |
Sbjct 4702070 TGGCAAAGAGAAGTTTGAAGTGAAAAAGGGTGATCGAATTGCTCAGCTCATTCGTGAGCA 4702011
Query 1145 GGCTGTTTT-TCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTCTG 1203
| | |||| |||| ||| || ||| | ||| || ||| | ||||||||||| |
Sbjct 4702010 GATTTTTTTATCCAGAAATTGAAGAAGTTCAAGTCTTGGATGATACTGAAAGGGGTTCAG 4701951
Query 1204 CAGGATTTGGGTCTACCGGAAGA 1226
||| ||||| ||||| | ||||
Sbjct 4701950 GAGGTTTTGGTTCTACTGAAAGA 4701928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138574237299108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |