Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq190 113 1e-20 seq4931 102 2e-17 seq113 102 2e-17 >seq190 Length=3085523 Score = 113 bits (124), Expect = 1e-20 Identities = 181/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| || ||||| ||| ||||||| | || || || || || || | || ||||| Sbjct 695485 TGGGTGCTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCATCGATGT 695426 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | |||||| || ||||||||| | || || ||||| Sbjct 695425 AGGAGCTGGTGTCATAGATGAAGATTATAGGGGAAATGTTGGTGTTATATTGTTCAATTT 695366 Query 1085 TAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGAAAA 1144 | | | || ||| | | || |||||| | ||||||||| | ||||||||| | Sbjct 695365 TGACAAAGAGAAATTTGAAGTGAAAAAGGGTGATGGAATTGCTCAGCTCATTTGTGAACA 695306 Query 1145 GGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTCTGC 1204 || | ||| |||| ||| || ||| | ||| || ||| | ||||||||||| | Sbjct 695305 GGTTTTTTATCCAGAAATTGAAGAAGTTCAAGTCTTGGATGATACTGAAAGGGGTTCAGG 695246 Query 1205 AGGATTTGGGTCTACCGGAA 1224 ||| || || || || |||| Sbjct 695245 AGGTTTGGGTTCCACTGGAA 695226 >seq4931 Length=27746 Score = 102 bits (112), Expect = 2e-17 Identities = 181/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 18829 GGAGCTAGGTGGTCCGTAGATCAGATGGATAATGTAAATCCATTTAACCACCACCGTAAT 18888 ||| | |||||||| ||||| |||||| | || ||||||||||| || ||| | ||| Sbjct 16724 GGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAAT 16783 Query 18889 TGGGGATTAAAGTATAGGTCTCAGTTACTAGGTAATAGTAGATACTGTAATTTTCACATT 18948 || || | ||| ||||||||| || |||| ||| || | || | ||||| ||| Sbjct 16784 ACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATT 16843 Query 18949 CAGGTACCTCAAAAGTATTTCGCGATTAAAAATCTACTGTTACTTCCTGGCTCATATACG 19008 ||||| || ||||||| ||| || |||||| | | || | || || || || || | Sbjct 16844 CAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGT 16903 Query 19009 TATGAGTGGGTACTAAGGAAGGATCCTAACATGATTTTACAATCAAGTTTAGGTAATGAC 19068 || || ||| | || || ||| ||||||||||| || | | | || ||||| Sbjct 16904 TACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGAT 16963 Query 19069 TTGAGAATAGATGGAGCATCCGTA 19092 |||| || ||||| || ||| Sbjct 16964 CTGAGGGAGGACGGAGCGTCAGTA 16987 >seq113 Length=6198913 Score = 102 bits (112), Expect = 2e-17 Identities = 181/263 (69%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| || ||||| ||| ||||||| | | || || || || || | |||||||| Sbjct 4702190 TGGGTGCTATGGAAGAGTAGCTCCACGTTTTGGCTTGGCTGCAAAACACTTCATTGATGT 4702131 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | |||||| || |||||||| | || | ||||| Sbjct 4702130 AGGAGCTGGTGTCATAGATGAAGATTATAGGGGAAATTTTGGTGTTATATTGCTCAATTT 4702071 Query 1085 TAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGAAAA 1144 | || | || ||| | | || |||||| | ||||||||| | ||| |||| | Sbjct 4702070 TGGCAAAGAGAAGTTTGAAGTGAAAAAGGGTGATCGAATTGCTCAGCTCATTCGTGAGCA 4702011 Query 1145 GGCTGTTTT-TCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTCTG 1203 | | |||| |||| ||| || ||| | ||| || ||| | ||||||||||| | Sbjct 4702010 GATTTTTTTATCCAGAAATTGAAGAAGTTCAAGTCTTGGATGATACTGAAAGGGGTTCAG 4701951 Query 1204 CAGGATTTGGGTCTACCGGAAGA 1226 ||| ||||| ||||| | |||| Sbjct 4701950 GAGGTTTTGGTTCTACTGAAAGA 4701928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138574237299108