Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq190 104 2e-17
seq91 93.3 3e-14
seq83 87.8 1e-12
>seq190
Length=3085523
Score = 104 bits (114), Expect = 2e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126
|||||||| | ||||||||||| | |||||||| | || ||||| ||||| ||||
Sbjct 695294 GGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCCTTTTTCACTTCAAAT 695353
Query 9127 T---CTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183
| || |||| ||| |||||| | || || || || ||||| ||||| |||||
Sbjct 695354 TTCTCTTTGTCAAAAT---TGAACAATATAACACCAACATTTCCCCTATAATCTTCATCT 695410
Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243
|| |||||||| || || ||||||||||| || | || | ||||| || || || | |
Sbjct 695411 ATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGCTACT 695470
Query 9244 CGACCGTAGCATCC 9257
| || ||||| ||
Sbjct 695471 CTTCCATAGCACCC 695484
>seq91
Length=4965619
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| |||| || | ||| || | ||| || ||| ||| ||||| || ||||| ||||||
Sbjct 1585549 CCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAT 1585608
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | || | | || |||| ||||||||| ||||| ||||||| || ||||| | |
Sbjct 1585609 AAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGC 1585668
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || ||||| |||||| ||| || || || | || |||
Sbjct 1585669 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACC 1585728
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
| | || || ||||| ||||| | ||||| | |||||||||||| ||
Sbjct 1585729 TTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCATCCTG 1585779
>seq83
Length=9551901
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126
|||||||| || || ||||||| | |||||||| || | ||||| ||||| ||||
Sbjct 3111951 GGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATTACCCTTTTTCACTTCAAAC 3111892
Query 9127 T-CTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGAT 9185
| || | | || |||||||| | || || || || ||||| ||||| |||| ||
Sbjct 3111891 TTCTCTTTGCCAAA-ATTGAACAATATAACACCAACTTTCCCCCTATAATCTTCATATAT 3111833
Query 9186 CACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCG 9245
|||||||| || || ||||||||||| || || | ||||| || || || | ||
Sbjct 3111832 GACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCCAGAACGTGGAGCTACTCT 3111773
Query 9246 ACCGTAGCATCC 9257
|| ||||| ||
Sbjct 3111772 TCCATAGCACCC 3111761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380634929958339
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |