Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq190 104 2e-17 seq91 93.3 3e-14 seq83 87.8 1e-12 >seq190 Length=3085523 Score = 104 bits (114), Expect = 2e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 |||||||| | ||||||||||| | |||||||| | || ||||| ||||| |||| Sbjct 695294 GGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCCTTTTTCACTTCAAAT 695353 Query 9127 T---CTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 | || |||| ||| |||||| | || || || || ||||| ||||| ||||| Sbjct 695354 TTCTCTTTGTCAAAAT---TGAACAATATAACACCAACATTTCCCCTATAATCTTCATCT 695410 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 || |||||||| || || ||||||||||| || | || | ||||| || || || | | Sbjct 695411 ATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGCTACT 695470 Query 9244 CGACCGTAGCATCC 9257 | || ||||| || Sbjct 695471 CTTCCATAGCACCC 695484 >seq91 Length=4965619 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | ||| || | ||| || ||| ||| ||||| || ||||| |||||| Sbjct 1585549 CCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAT 1585608 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | | || |||| ||||||||| ||||| ||||||| || ||||| | | Sbjct 1585609 AAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGC 1585668 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| ||| || || || | || ||| Sbjct 1585669 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACC 1585728 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 | | || || ||||| ||||| | ||||| | |||||||||||| || Sbjct 1585729 TTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCATCCTG 1585779 >seq83 Length=9551901 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 |||||||| || || ||||||| | |||||||| || | ||||| ||||| |||| Sbjct 3111951 GGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATTACCCTTTTTCACTTCAAAC 3111892 Query 9127 T-CTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGAT 9185 | || | | || |||||||| | || || || || ||||| ||||| |||| || Sbjct 3111891 TTCTCTTTGCCAAA-ATTGAACAATATAACACCAACTTTCCCCCTATAATCTTCATATAT 3111833 Query 9186 CACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCG 9245 |||||||| || || ||||||||||| || || | ||||| || || || | || Sbjct 3111832 GACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCCAGAACGTGGAGCTACTCT 3111773 Query 9246 ACCGTAGCATCC 9257 || ||||| || Sbjct 3111772 TCCATAGCACCC 3111761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380634929958339