Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_019404.1 Length=46054 Score E Sequences producing significant alignments: (Bits) Value seq62610 176 1e-39 >seq62610 Length=1102 Score = 176 bits (194), Expect = 1e-39 Identities = 310/453 (68%), Gaps = 5/453 (1%) Strand=Plus/Minus Query 3916 AAGACCCTATACAACAAGAAGTACGGCGACATTGCCATGGTGGCAGTTAACCGAAAGTAC 3975 ||| | || || ||||| | ||| ||||||||||| | ||||| | | ||| |||||| Sbjct 454 AAGGCGCTCTAAAACAATATGTATGGCGACATTGCTAAGGTGGTCATCACCCGCAAGTAC 395 Query 3976 ACGCCGGAAGAGGTGTTTGATTTCGCTGTGAGATACTTCACTTGGGCTGAAGGTGAGGCA 4035 || || || || || ||||| ||| ||| |||||||| ||||||| || |||||| | Sbjct 394 ACCCCTGAGGAAGTTTTTGACTTCTCTGGTCGATACTTCTCTTGGGCGGAGAGTGAGGAA 335 Query 4036 ATAAAAGCAATTGAAACCGCAGCATTCCAGGGAGTTGTTAGTGAAAACCTTATCCATAAA 4095 || | || ||||| || |||||| ||||||| |||| | | |||| ||| | |||||| Sbjct 334 ATTGAGGCTATTGAGACGGCAGCACTCCAGGGGGTTGATGGAGAAAGCCTCGTACATAAA 275 Query 4096 CCGAGAGTCTTCACCTTA-ACTGGTCTAGCTTTGTTTATTGGCGTTAAGATCGGTNNNNN 4154 ||| |||| ||||||| | | || || || | | || | ||||| || Sbjct 274 CCGCGAGTATTCACCTGAGGCGGGGCTTGCGCTCTACATGGATGTTAATGTCTTCATATT 215 Query 4155 NNNNNNNNNNNNNNNNNNGCCTGGGTACTCTGACGTGATGGAGTTTA-TTGATAACGTAA 4213 | |||| |||||||| || | ||| || | ||||||||||| Sbjct 214 CCCTCGCTGGCGCACTGAGGCTGGATACTCTGATGTTAGGGAATTCATTTGATAACGTAT 155 Query 4214 TCTATGAGCAGAAATATCAGCTTGGCGTTGCAGGTATTATCAACTCTACCATCGTTGGTA 4273 || | | || ||||| || ||||| | || || | ||||||||| | | || ||| | Sbjct 154 TCAACAATCACAAATACCATCTTGGTGCAGCCGGAAGTATCAACTCCAACTTCTCTGGGA 95 Query 4274 AGGA-GTTAGGCATTGATAAGCCGCAGGAAATTACCATTAGCAACAACTCAACAGCTA-A 4331 | || || | |||||||| || | ||| |||| ||| | | || || ||||||| | Sbjct 94 AAGATCTTGGATATTGATAA-CCACTGGAGATTAACATCATTAGTAAGTCTACAGCTACA 36 Query 4332 CGACGTTGATAGCATGAAGGAAGCGCTGGAATC 4364 | | |||||||||||| |||| |||||||| Sbjct 35 CTCTGCTGATAGCATGAATGAAGTACTGGAATC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147137202998656