Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_019404.1
Length=46054
Score E
Sequences producing significant alignments: (Bits) Value
seq62610 176 1e-39
>seq62610
Length=1102
Score = 176 bits (194), Expect = 1e-39
Identities = 310/453 (68%), Gaps = 5/453 (1%)
Strand=Plus/Minus
Query 3916 AAGACCCTATACAACAAGAAGTACGGCGACATTGCCATGGTGGCAGTTAACCGAAAGTAC 3975
||| | || || ||||| | ||| ||||||||||| | ||||| | | ||| ||||||
Sbjct 454 AAGGCGCTCTAAAACAATATGTATGGCGACATTGCTAAGGTGGTCATCACCCGCAAGTAC 395
Query 3976 ACGCCGGAAGAGGTGTTTGATTTCGCTGTGAGATACTTCACTTGGGCTGAAGGTGAGGCA 4035
|| || || || || ||||| ||| ||| |||||||| ||||||| || |||||| |
Sbjct 394 ACCCCTGAGGAAGTTTTTGACTTCTCTGGTCGATACTTCTCTTGGGCGGAGAGTGAGGAA 335
Query 4036 ATAAAAGCAATTGAAACCGCAGCATTCCAGGGAGTTGTTAGTGAAAACCTTATCCATAAA 4095
|| | || ||||| || |||||| ||||||| |||| | | |||| ||| | ||||||
Sbjct 334 ATTGAGGCTATTGAGACGGCAGCACTCCAGGGGGTTGATGGAGAAAGCCTCGTACATAAA 275
Query 4096 CCGAGAGTCTTCACCTTA-ACTGGTCTAGCTTTGTTTATTGGCGTTAAGATCGGTNNNNN 4154
||| |||| ||||||| | | || || || | | || | ||||| ||
Sbjct 274 CCGCGAGTATTCACCTGAGGCGGGGCTTGCGCTCTACATGGATGTTAATGTCTTCATATT 215
Query 4155 NNNNNNNNNNNNNNNNNNGCCTGGGTACTCTGACGTGATGGAGTTTA-TTGATAACGTAA 4213
| |||| |||||||| || | ||| || | |||||||||||
Sbjct 214 CCCTCGCTGGCGCACTGAGGCTGGATACTCTGATGTTAGGGAATTCATTTGATAACGTAT 155
Query 4214 TCTATGAGCAGAAATATCAGCTTGGCGTTGCAGGTATTATCAACTCTACCATCGTTGGTA 4273
|| | | || ||||| || ||||| | || || | ||||||||| | | || ||| |
Sbjct 154 TCAACAATCACAAATACCATCTTGGTGCAGCCGGAAGTATCAACTCCAACTTCTCTGGGA 95
Query 4274 AGGA-GTTAGGCATTGATAAGCCGCAGGAAATTACCATTAGCAACAACTCAACAGCTA-A 4331
| || || | |||||||| || | ||| |||| ||| | | || || ||||||| |
Sbjct 94 AAGATCTTGGATATTGATAA-CCACTGGAGATTAACATCATTAGTAAGTCTACAGCTACA 36
Query 4332 CGACGTTGATAGCATGAAGGAAGCGCTGGAATC 4364
| | |||||||||||| |||| ||||||||
Sbjct 35 CTCTGCTGATAGCATGAATGAAGTACTGGAATC 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147137202998656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |