Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq184 190 4e-43
seq108 145 1e-29
seq61 84.2 4e-11
seq17 84.2 4e-11
>seq184
Length=1365342
Score = 190 bits (210), Expect = 4e-43
Identities = 188/243 (77%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| ||
Sbjct 317893 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGC 317834
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
|||||||| ||| |||||| | ||||| || ||||| || | |||||| ||||||
Sbjct 317833 TCCCGCAGGACGCCGGCGGTACTCGACAGCCCCGCGTTCTCCGCCTTGAGGGTCTTCACC 317774
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 317773 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 317714
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| ||
Sbjct 317713 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 317654
Query 241625 GAC 241627
|||
Sbjct 317653 GAC 317651
Score = 89.7 bits (98), Expect = 1e-12
Identities = 88/115 (77%), Gaps = 8/115 (7%)
Strand=Plus/Minus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||| ||||| |||||||| | |||||||| ||| |||||| | ||||| |||||||
Sbjct 317856 TCTGCTTGAGCTGGGCCACTTGCTCCCGCAGGACGCCGGCGGTACTCGACAGCCCCGCGT 317797
Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || | |||||| | || |||||||| ||||||||||| ||||||||
Sbjct 317796 TCTCCGCCTTGAGGGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 317742
>seq108
Length=2208520
Score = 145 bits (160), Expect = 1e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
|| || | ||| ||||| || |||||||| || ||||| | | ||||| || |||
Sbjct 1767128 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGAGGCCAGC 1767069
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | ||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct 1767068 TCGGTGTTCTGGCTCTTGAGCGTCTTCACCTTCTCCTCCAGCCGCGAGATGCGCTCCAGC 1767009
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| || || | |||||| || || | ||| || |||||||||
Sbjct 1767008 TTGCGCTTGCGGCACTTGGACGCGGCGATGCGGTTTCGCAGGCGCTTGCGCTCCGCCTTG 1766949
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 1766948 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1766916
>seq61
Length=10587387
Score = 84.2 bits (92), Expect = 4e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 5066416 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 5066357
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | || | ||||| ||||| || |||||| ||||||||||
Sbjct 5066356 GCGATGCGGTTCCTCATGCGTTTCCTCTCCGCTTTGATCCGCTCCTGGGACTCCATGTCG 5066297
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 5066296 ATGGGGGAC 5066288
>seq17
Length=26966924
Score = 84.2 bits (92), Expect = 4e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212
|||| || | ||||||||| | ||||| || ||| |||||||||| || |||| |
Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945
Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272
| |||||||| || || || ||||| ||||||||||| | || || ||||| || || |
Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885
Query 48273 C 48273
|
Sbjct 9450884 C 9450884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930773682277120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |