Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq111 129 8e-25 >seq111 Length=9602903 Score = 129 bits (142), Expect = 8e-25 Identities = 216/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760 ||| |||||| |||| ||||||| ||| | | || | | || || ||| | |||| Sbjct 6043887 AGTGGAAGTGATAACCCAGGATG-AAAGAGAGCGGCTACACACACCGGCATCCTTAAGAT 6043945 Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820 | || || |||| | || ||| | || |||| || ||||| || ||||| |||||| Sbjct 6043946 GTTCTCTGCAAACGTCCCAGGAAGCCTTGCTTGTGACATGGCAGAAAAAGAAGGCTGTAA 6044005 Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880 | |||||||| ||| ||| || || | || || || ||| | ||||| | |||| Sbjct 6044006 GCCCAGAAAACATGATCACTTACAGTGAGAGCCGTGGGGTTGTGGTCCAGCCTGCCTATA 6044065 Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940 | |||||| | || || || || | || || |||| || || || ||||| Sbjct 6044066 AGGATAGAGTCAACATCACTGAGCTGGGACTCCGGAACACAGCAATCACCTTCTGGAACA 6044125 Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000 | || ||||||||||| || || || |||||||| || || || ||||||||||| |||| Sbjct 6044126 CGACTCTGGATGATGAGGGGTGCTACATGTGTCTTTTCAACATCTTCGGTTCTGGAAAGG 6044185 Query 154001 TATCGGGAAC 154010 | || ||||| Sbjct 6044186 TCTCAGGAAC 6044195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 648770077965680