Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq50689 143 8e-30 seq41124 109 2e-19 seq53693 87.8 5e-13 seq21622 84.2 7e-12 seq18358 82.4 2e-11 >seq50689 Length=1894 Score = 143 bits (158), Expect = 8e-30 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6804 GCATTCAGGATGCGGACGCACAGCGCGAAGGCATTAACGCCTCTGCCCGTTACCCGAAAA 6863 || ||| ||||| || || ||||||||||| || | ||||| | || |||||||||| Sbjct 656 GCGTTCTTGATGCTGATGCCCAGCGCGAAGGTATCTATGCCTCGACACGCTACCCGAAAA 597 Query 6864 ACTGGGTGACCACCGGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGA 6923 ||||||| | || ||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 596 GCTGGGTGCAGTCGGGGGATCCGGCGCGCGAATTCACCATGATTCACTCAGCTCCGCTGA 537 Query 6924 TGCTGCTGGCTGACCCTGATGAGTTCGTGTCCGTACAACTGGCGTAA 6970 |||||||| | |||||||| | ||| | ||||| ||||||| ||| Sbjct 536 TGCTGCTGCCAGACCCTGACGCATTCTTCTCCGTCAAACTGGCATAA 490 >seq41124 Length=2564 Score = 109 bits (120), Expect = 2e-19 Identities = 103/129 (80%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 6842 GCCTCTGCCCGTTACCCGAAAAACTGGGTGACCACCGGCGATCCGGCGCGTGAGTTCACC 6901 ||||| | || |||||||||||||||||| |||| ||||||||||| || ||| || Sbjct 285 GCCTCCACACGCTACCCGAAAAACTGGGTGCAGTCCGGGGATCCGGCGCGCGAATTC-CC 227 Query 6902 ATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGACCCTGATGAGTTCGTGTCCGTACAA 6961 ||||||||||| | ||||||||||||||| | |||||| | ||||| ||||| || Sbjct 226 ATGATTCAGTC-TCTCCGCTGATGCTGCTGCCACTCCCTGACGCATTCGTCTCCGTCAAA 168 Query 6962 CTGGCGTAA 6970 ||||| ||| Sbjct 167 CTGGCATAA 159 >seq53693 Length=1673 Score = 87.8 bits (96), Expect = 5e-13 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 6881 GATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGACCCT 6940 ||||||||||| || |||||||||||||||||| | ||||||||||||||| | |||||| Sbjct 529 GATCCGGCGCGCGAATTCACCATGATTCAGTCACCTCCGCTGATGCTGCTGCCAGACCCT 470 Query 6941 GATGAGTTCGTGTCCGTACAACTGGCGTAA 6970 || ||||| ||| | ||| ||| ||| Sbjct 469 GACACATTCGTCTCC-AATAACAGGCATAA 441 >seq21622 Length=315 Score = 84.2 bits (92), Expect = 7e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 6877 CGGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGA 6936 ||| ||||||||||| || ||| |||||||||||||||| ||||||||||||||| | | Sbjct 69 CGGGGATCCGGCGCGCGAATTCCCCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCATA 10 Query 6937 CCCTGA 6942 |||||| Sbjct 9 CCCTGA 4 >seq18358 Length=1061 Score = 82.4 bits (90), Expect = 2e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 6881 GATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGACCCT 6940 ||||| ||||| | ||||||||||||| ||||| ||||||||||||||| | |||||| Sbjct 704 GATCCAGCGCGGAAATTCACCATGATTCCATCAGCTCCGCTGATGCTGCTGCCAGACCCT 645 Query 6941 GATGAGTTCGTGTCCGTACAACTGGCGTAA 6970 || ||| | ||||| ||||||| ||| Sbjct 644 GACTCATTCATCTCCGTCAAACTGGCTTAA 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150449836480632