Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_020074.1
Length=30024
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 150 3e-32
>seq4931
Length=27746
Score = 150 bits (166), Expect = 3e-32
Identities = 497/765 (65%), Gaps = 12/765 (2%)
Strand=Plus/Plus
Query 16073 AATATTGGAGCCAGGTGGTCCCTTGATATAATGGACAATATAAATCCTTTTAATCATCAT 16132
|| || ||| |||||||||| | ||| | ||||||| | ||||| |||||||||||
Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777
Query 16133 AGAAATATGGGTTTAAAATACAGATCTCAGTTATTGGGCAATGGCAGGTATAGCAGATTT 16192
||||||| ||||| | ||||| |||||| |||| || ||||| | ||| |||
Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837
Query 16193 CATATTCAAGTACCTCAAAAGTTCTTTGCGATTAAGAACCTTTTGTTGCTGCCTGGCACT 16252
|||||||| || || |||||||| ||||| |||| | | | |||| || || |
Sbjct 16838 CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCG 16897
Query 16253 TACAATTATGAATGGTACTTTAGGAAAGATCCCAATATGATTCTCCAATCTTCTATTGGA 16312
|||| ||| ||||||| ||||| |||||| || |||||| | || | || ||||
Sbjct 16898 TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGC 16957
Query 16313 AATGATTTAAGAGCTGATGGTGCTTATATCA-ACTACACTAATATTAATCTATACGTTTC 16371
|||||| | || | || || || | | | | | || | |||| |||| | | |
Sbjct 16958 AATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGAC-AGCATTAGCCTATTTGCTAC 17016
Query 16372 TTTCTTTCCAATGAATTATGAAACTGTTAGTGAGTTGGAATTAATGCTAAGAAATGCCAC 16431
||||||||| ||| | || | |||| | | ||||| ||||| | ||||
Sbjct 17017 TTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGT 17076
Query 16432 AAATGATCAAAATTTTGCTGATTA-CTTAGGTGCAGTAAATAATCTTTATCAAATTCCCC 16490
|| ||||| || | || || ||| || || || | |||||| ||||| |
Sbjct 17077 TAACGATCAGTCCTTCGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCTATTCCTC 17135
Query 16491 CAAATACAAATACTGTAGTTGTAAATATCCCTGATAGATCTTGGGGCGCTTTTAGGGGAT 16550
| || || || || | | ||| || | || ||||| || ||||| || |
Sbjct 17136 CGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195
Query 16551 GGAGTTTTAATAGATTAAAAGCTTCTGAAACTCCTATGATTGGAGCTACCAAGGATCCAA 16610
|| |||| |||| ||||| ||||| || | ||||| || | || |||
Sbjct 17196 GGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCAT 17255
Query 16611 ATTTTCTGTATTCTGGAAGTATTCCTCTATT-AGATGGTACATTTTATCTCTCACATACT 16669
| ||| ||| || || | ||| |||| |||| || |||||| | || || |||
Sbjct 17256 ACTTTAGGTACTC-GGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACT 17314
Query 16670 TTCCAACGTGTTTCAATTCAATGGGATTCAAGTGTACCATGGCCCGGAGATGATAGACTG 16729
|| | || | || || | ||||| ||| ||||| ||| |||| |||||
Sbjct 17315 ATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTT 17374
Query 16730 TTAATTCCTAACTGGTTTGAAATTAAAAGAGACAATAACATTGATGCAGAGGGCTACAAT 16789
||||| ||||| ||| | || ||||||| | | || || || ||||| ||
Sbjct 17375 TTAATACCTAATGAATTTCACATAAAAAGAG------AGGTGGACGCGGAAGGCTATAAC 17428
Query 16790 ATGAGTCAAAGTAATATCACTAAAGATTGGTATATGATACAAATG 16834
| ||| || | || ||||| |||||||||||||| ||||||
Sbjct 17429 ACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATG 17473
Score = 95.1 bits (104), Expect = 2e-15
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 5743 GGATTAAGAGTTCTTCCATACGGCATTGGATGTGTTAAAGCACTGGCATACATTCCACAA 5802
|||||||| | | ||| | ||||| ||||| ||||| || |||||||||||||| ||
Sbjct 6039 GGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAA 6098
Query 5803 ATATCATAAACATACAATGGTTTTGTGTAAACTCCTAAAAAGGTGGGGTAACATCTTCCA 5862
|||||||||||||| | |||| |||| |||| | |||||||| || | |||
Sbjct 6099 ATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCC 6158
Query 5863 CCTCTTACACTTGCTCTAATAAAAGAATACAT 5894
||||| | ||| |||| | |||| ||| ||
Sbjct 6159 CCTCTGATGCTTTCTCTTACAAAATCATAAAT 6190
Score = 87.8 bits (96), Expect = 3e-13
Identities = 178/262 (68%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 14786 GAAAAATTTAGAGATCCTTTTGTAGCTCCATCATCAGGA-GTAACTACCGACCGTTCTCA 14844
|| ||||||||| |||| || || || || || || |||||||| || | || ||
Sbjct 15440 GATAAATTTAGAAATCCGACGGTTGCGCCGACA-CACGATGTAACTACGGAAAGATCGCA 15498
Query 14845 AAAACTACAACTTCGTATTGTACCAATACAAATAGAAGATAATGAAAATTTTTATAAAGC 14904
| ||||||| | | |||| ||| ||| |||||||| | || || ||||||
Sbjct 15499 GAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATACTTTTAAAGC 15558
Query 14905 TAGATTCACCCTTAATGTAGGAGACAATCGCGTGGCAGATTTGGGAAGTGCTTATTTTGA 14964
|||| || | || || || || | | ||||||||| ||| |||||||||
Sbjct 15559 CCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAGTTATTTTGA 15618
Query 14965 TATAGAAGGATTTTTAGACCGAGGTTTTTCTTTTAAACCATATGGAGGAACTGCTTATAA 15024
|||| | ||| ||||| ||||| ||||||||||| || | || || || || ||
Sbjct 15619 TATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCACAGCATACAA 15678
Query 15025 TCCCCTCGCTCCTAAATCAGCT 15046
| ||| || || |||||||||
Sbjct 15679 TAACCTTGCCCCGAAATCAGCT 15700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 95880914662676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |