Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_020074.1 Length=30024 Score E Sequences producing significant alignments: (Bits) Value seq4931 150 3e-32 >seq4931 Length=27746 Score = 150 bits (166), Expect = 3e-32 Identities = 497/765 (65%), Gaps = 12/765 (2%) Strand=Plus/Plus Query 16073 AATATTGGAGCCAGGTGGTCCCTTGATATAATGGACAATATAAATCCTTTTAATCATCAT 16132 || || ||| |||||||||| | ||| | ||||||| | ||||| ||||||||||| Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777 Query 16133 AGAAATATGGGTTTAAAATACAGATCTCAGTTATTGGGCAATGGCAGGTATAGCAGATTT 16192 ||||||| ||||| | ||||| |||||| |||| || ||||| | ||| ||| Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837 Query 16193 CATATTCAAGTACCTCAAAAGTTCTTTGCGATTAAGAACCTTTTGTTGCTGCCTGGCACT 16252 |||||||| || || |||||||| ||||| |||| | | | |||| || || | Sbjct 16838 CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCG 16897 Query 16253 TACAATTATGAATGGTACTTTAGGAAAGATCCCAATATGATTCTCCAATCTTCTATTGGA 16312 |||| ||| ||||||| ||||| |||||| || |||||| | || | || |||| Sbjct 16898 TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGC 16957 Query 16313 AATGATTTAAGAGCTGATGGTGCTTATATCA-ACTACACTAATATTAATCTATACGTTTC 16371 |||||| | || | || || || | | | | | || | |||| |||| | | | Sbjct 16958 AATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGAC-AGCATTAGCCTATTTGCTAC 17016 Query 16372 TTTCTTTCCAATGAATTATGAAACTGTTAGTGAGTTGGAATTAATGCTAAGAAATGCCAC 16431 ||||||||| ||| | || | |||| | | ||||| ||||| | |||| Sbjct 17017 TTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGT 17076 Query 16432 AAATGATCAAAATTTTGCTGATTA-CTTAGGTGCAGTAAATAATCTTTATCAAATTCCCC 16490 || ||||| || | || || ||| || || || | |||||| ||||| | Sbjct 17077 TAACGATCAGTCCTTCGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCTATTCCTC 17135 Query 16491 CAAATACAAATACTGTAGTTGTAAATATCCCTGATAGATCTTGGGGCGCTTTTAGGGGAT 16550 | || || || || | | ||| || | || ||||| || ||||| || | Sbjct 17136 CGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195 Query 16551 GGAGTTTTAATAGATTAAAAGCTTCTGAAACTCCTATGATTGGAGCTACCAAGGATCCAA 16610 || |||| |||| ||||| ||||| || | ||||| || | || ||| Sbjct 17196 GGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCAT 17255 Query 16611 ATTTTCTGTATTCTGGAAGTATTCCTCTATT-AGATGGTACATTTTATCTCTCACATACT 16669 | ||| ||| || || | ||| |||| |||| || |||||| | || || ||| Sbjct 17256 ACTTTAGGTACTC-GGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACT 17314 Query 16670 TTCCAACGTGTTTCAATTCAATGGGATTCAAGTGTACCATGGCCCGGAGATGATAGACTG 16729 || | || | || || | ||||| ||| ||||| ||| |||| ||||| Sbjct 17315 ATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTT 17374 Query 16730 TTAATTCCTAACTGGTTTGAAATTAAAAGAGACAATAACATTGATGCAGAGGGCTACAAT 16789 ||||| ||||| ||| | || ||||||| | | || || || ||||| || Sbjct 17375 TTAATACCTAATGAATTTCACATAAAAAGAG------AGGTGGACGCGGAAGGCTATAAC 17428 Query 16790 ATGAGTCAAAGTAATATCACTAAAGATTGGTATATGATACAAATG 16834 | ||| || | || ||||| |||||||||||||| |||||| Sbjct 17429 ACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATG 17473 Score = 95.1 bits (104), Expect = 2e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 5743 GGATTAAGAGTTCTTCCATACGGCATTGGATGTGTTAAAGCACTGGCATACATTCCACAA 5802 |||||||| | | ||| | ||||| ||||| ||||| || |||||||||||||| || Sbjct 6039 GGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAA 6098 Query 5803 ATATCATAAACATACAATGGTTTTGTGTAAACTCCTAAAAAGGTGGGGTAACATCTTCCA 5862 |||||||||||||| | |||| |||| |||| | |||||||| || | ||| Sbjct 6099 ATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCC 6158 Query 5863 CCTCTTACACTTGCTCTAATAAAAGAATACAT 5894 ||||| | ||| |||| | |||| ||| || Sbjct 6159 CCTCTGATGCTTTCTCTTACAAAATCATAAAT 6190 Score = 87.8 bits (96), Expect = 3e-13 Identities = 178/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 14786 GAAAAATTTAGAGATCCTTTTGTAGCTCCATCATCAGGA-GTAACTACCGACCGTTCTCA 14844 || ||||||||| |||| || || || || || || |||||||| || | || || Sbjct 15440 GATAAATTTAGAAATCCGACGGTTGCGCCGACA-CACGATGTAACTACGGAAAGATCGCA 15498 Query 14845 AAAACTACAACTTCGTATTGTACCAATACAAATAGAAGATAATGAAAATTTTTATAAAGC 14904 | ||||||| | | |||| ||| ||| |||||||| | || || |||||| Sbjct 15499 GAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATACTTTTAAAGC 15558 Query 14905 TAGATTCACCCTTAATGTAGGAGACAATCGCGTGGCAGATTTGGGAAGTGCTTATTTTGA 14964 |||| || | || || || || | | ||||||||| ||| ||||||||| Sbjct 15559 CCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAGTTATTTTGA 15618 Query 14965 TATAGAAGGATTTTTAGACCGAGGTTTTTCTTTTAAACCATATGGAGGAACTGCTTATAA 15024 |||| | ||| ||||| ||||| ||||||||||| || | || || || || || Sbjct 15619 TATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCACAGCATACAA 15678 Query 15025 TCCCCTCGCTCCTAAATCAGCT 15046 | ||| || || ||||||||| Sbjct 15679 TAACCTTGCCCCGAAATCAGCT 15700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95880914662676