Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq202 131 1e-24 seq10 102 5e-16 seq91 93.3 3e-13 seq55 91.5 1e-12 seq84 87.8 1e-11 seq148 86.0 4e-11 >seq202 Length=1299801 Score = 131 bits (144), Expect = 1e-24 Identities = 329/495 (66%), Gaps = 4/495 (1%) Strand=Plus/Plus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| || || || || || ||||| ||||| || || | || || || || || Sbjct 1282622 ATGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGG 1282681 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 | || || || || || | || ||||||||||| ||||| | || | || || | Sbjct 1282682 CCTTCACCGACACCGAGCGGCTCATTGGAGATGCGGCTAAGAACCAGGTAGCCATGAACC 1282741 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 | |||||| | |||||||| ||| | ||||||| | || ||| | ||| | || Sbjct 1282742 CGCAGAATACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAACGATCCTGTTG 1282801 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATA 474620 | || || |||||| | |||||| ||| | ||||| |||| || || || || | Sbjct 1282802 TACAGTCAGATATGAAACTTTGGCCATTTCAAGTGATCAATGAAGGAGGGAAGCCCAAAG 1282861 Query 474621 TAGAAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATG 474679 | || | | | ||| || | ||| || | || || | || ||||||||| Sbjct 1282862 T-GATGGTGTCTTATAAAGGGGAGAAGAAAGCTTTCTACCCTGAGGAGATCTCTTCAATG 1282920 Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 || | |||| |||||| | || || ||| | | | | || || || || |||| Sbjct 1282921 GTACTGACCAAGATGAAAGAGACTGCAGAG-GCTTTTTTGGGCCACACTGTCACCAATGC 1282979 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || || ||||| ||||| ||||| |||||||| || || || || ||||| || Sbjct 1282980 CGTGATCACCGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGG 1283039 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 || ||||| || ||||| || | || || |||||||| || ||||| || |||| Sbjct 1283040 TGTGATCGCAGGCCTCAATGTGCTAAGAATCATCAATGAACCCACTGCAGCTGCCATTGC 1283099 Query 474859 TTATGGTCTTGATAA 474873 |||||| | ||||| Sbjct 1283100 CTATGGTTTAGATAA 1283114 Score = 122 bits (134), Expect = 6e-22 Identities = 538/839 (64%), Gaps = 12/839 (1%) Strand=Plus/Plus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 || ||||| |||| |||| || |||||||| || | || | ||||| || || Sbjct 1283191 GACGATGGGATTTTTGAGGTAAAGGCTACAGCTGGGGACACCCACTTGGGTGGGGAGGAC 1283250 Query 475400 TTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTG 475457 |||||||| |||||||| | ||| || || || |||||||| |||| || Sbjct 1283251 TTTGATAACAGACTTGTGAGCCACTTTGTGGAGGAATTTAAGAGGAAGCATAAGAAGGAC 1283310 Query 475458 ATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGC 475517 ||| || | || || | || || || | ||||| ||||| | || ||| Sbjct 1283311 ATCAGCCAGAACAAGCGG--GCTGTGAGGCGGCTGCGCACTGCCTGTGAGAGGGCCAAGA 1283368 Query 475518 GAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTG 475577 | |||| || || || || | | | ||| |||| || |||| |||||| |||| Sbjct 1283369 GGACTCTGTCATCCAGCACCCAGGCCAACCTGGAAATTGACTCACTTTATGAAGGCATTG 1283428 Query 475578 ATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAA 475637 | | | || || || |||||| |||||||| | ||| | ||| | ||||| Sbjct 1283429 ACTTCTACACATCCATCACTAGGGCTCGTTTTGAAGAGTTGTGTGCAGATTTGTTTAGGG 1283488 Query 475638 AAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCC 475697 || | || || || ||| || ||| | ||| | || | || || || || ||| Sbjct 1283489 GTACCCTGGAGCCTGTGGAAAAATCTCTTCGGGATGCCAAGATGGATAAGTCTAAAATCC 1283548 Query 475698 ATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATA-AGAGAAATGCTTTCA 475756 | || |||||| | ||||| || || || | || || || || ||||| | ||| || Sbjct 1283549 ACGATATTGTTTTAGTAGGGGGCTCCACCCGCATCCCGAAGGTACAGAGAC-TACTT-CA 1283606 Query 475757 TCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATA 475815 | ||||||||||| | | || | ||| | || || |||||||| || || || Sbjct 1283607 GGAGTATTTTAATGGCCGTGATCTCAACAAGAGTATCAACCCGGATGAAGCAGTAGCCTA 1283666 Query 475816 TGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGAC-GAGAAACTAAATAATA 475874 ||||||||| ||||| ||||||||||| ||| | || | ||||| | | || Sbjct 1283667 TGGAGCTGCAGTCCAGGCAGCTATTTTGATGGGT-GACAAGTCTGAGAAGGTGCAGGATC 1283725 Query 475875 TTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGA 475934 | | | | |||||| |||| || || | || | || |||| ||| || | |||| Sbjct 1283726 TGCTTTTGCTGGACGTAGCTCCCCTCTCCCTGGGATTGGAGACAGCTGGGGGTGTGATGA 1283785 Query 475935 CTAATCTT-ATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACT 475993 || ||||| || | | || | | ||||| ||| | | | | || |||| Sbjct 1283786 CT-ATCTTGATCAAGCGCAACTCCACCATCCCCACTAAACAGACTCAGATCTTCACCACA 1283844 Query 475994 TATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACT 476053 || || || || || | ||| ||||| | | ||| || || ||| | || Sbjct 1283845 TACTCAGACAACCAGCCTGGGGTATTGATCCAGGTATATGAGGGCGAGAGAGCGATGACA 1283904 Query 476054 AAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 | || || ||| | ||| ||| | || || || |||||||| ||||| ||| Sbjct 1283905 AGGGACAACAACCTGTTGGGACGCTTTGACCTGACTGGAATACCTCCTGCACCCAGGGGA 1283964 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||||||| || || || || ||||| || ||||| ||||||||||| ||||| || || Sbjct 1283965 GTTCCTCAGATCGAGGTGACGTTTGACATCGATGCCAATGGTATTCTCAATGTCACAGC 1284023 >seq10 Length=26250347 Score = 102 bits (112), Expect = 5e-16 Identities = 228/338 (67%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||||||||| || || ||||| | || || || || || | | | Sbjct 23030299 CGTCTCCGCACTGCTTGTGAGCGGGCCAAGCGTACCCTCTCCTCCAGCACACAGGCCAGT 23030240 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 | || |||| || || | ||||| ||||| | ||||| ||| || ||||| | Sbjct 23030239 ATCGAGATTGACTCCCTGTACGAAGGCATTGACTTCTATACTTCTATCACCCGGGCTCGA 23030180 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | |||| ||||| | || | || || || ||| ||| |||| Sbjct 23030179 TTTGAAGAGTTGAATGCTGACCTCTTCCGTGGCACTCTGGATCCTGTAGAAAAAGCTCTC 23030120 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | ||||| ||||| ||||| ||||||| ||||| | || || ||||| || Sbjct 23030119 CGTGATGCCAAACTAGACAAGTCACAGATCCATGACATTGTCTTGGTGGGTGGTTCCACC 23030060 Query 475727 AGAATTCCAAAAATAAGAGAAATGCT--TTCATCATAT-TTTAATGGTAAAAAGTTAAAT 475783 | ||||| || || |||| ||| | || || | || || || || || | ||| Sbjct 23030059 CGTATTCCCAAGAT-CCAGAA--GCTTCTGCAAGATTTCTTCAACGGGAAGGAGCTGAAT 23030003 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | ||||| ||||| |||||||| ||||| || Sbjct 23030002 AAGAGCATTAATCCCGATGAGGCTGTTGCCTATGGTGC 23029965 >seq91 Length=4965619 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 ||||| | | ||| |||||||| || ||| ||| || || || |||| || || Sbjct 1585555 CGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATG--TTGTAGTCAGATAAAG 1585612 Query 480610 TTCTGTT-ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || ||| |||||| || ||||| |||||||| || || | ||| |||||||| | ||| Sbjct 1585613 TT-TGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATT 1585671 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 |||||||| || || ||||| || ||| ||| |||||||| | | || | | Sbjct 1585672 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTG 1585731 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || || || |||| |||||| || Sbjct 1585732 AGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTG 1585772 >seq55 Length=8345910 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| | ||||| ||||| |||||||||||| | ||||| |||||||| Sbjct 2142036 GTTACTCATGCAGTTGTCACTGTACCAGCCTATTTTAATGATGCCCAACGCCAAGCAACC 2141977 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || || ||||| | | || || ||||| || Sbjct 2141976 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 2141924 Score = 86.0 bits (94), Expect = 4e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || || || ||||| ||| || || || || ||| |||| || || Sbjct 2138946 AGGTGAACGACCTTTGACAAAAGACAATCACCTTCTGGGTACATTTGATCTGACTGGAAT 2138887 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 ||||||||||||| | || || || || |||||||| || ||||| || |||| ||||| Sbjct 2138886 TCCTCCTGCTCCCCGCGGGGTACCCCAGATTGAAGTCACCTTTGAAATAGATGTGAATGG 2138827 Query 476155 TATTCTT 476161 ||||||| Sbjct 2138826 TATTCTT 2138820 >seq84 Length=7487594 Score = 87.8 bits (96), Expect = 1e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 480563 TACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 ||| |||||||| || ||| |||| ||| || |||||| || ||| | |||| Sbjct 757435 TACTAGATGAAGAGTGGACTC-CTTTTGAATG-TTGCAATCAGATAAAGTACATCCATCT 757492 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 | || ||||| |||||||| | || | ||| ||||||||||||||||||||||| || Sbjct 757493 CCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 757552 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTT 480740 || ||||| || ||| ||| |||||||| | | || | | || | || ||| Sbjct 757553 TGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATTGAGTATGATGGTT 757612 Query 480741 TTACCGGTGAGAGTCTTAACGAAAAT 480766 || || || || || || | |||||| Sbjct 757613 TTCCCCGTAAGGGTTTTGATGAAAAT 757638 >seq148 Length=5416653 Score = 86.0 bits (94), Expect = 4e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 || ||| || ||||| |||||||| || || | ||| |||||||| |||||||||||||| Sbjct 991108 ATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCTTCCTT 991167 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG-GGTAA 480735 || || ||||| || ||| ||| |||||||| | | || | ||| || | | Sbjct 991168 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCAACTTCGAGTTATGA 991227 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || || ||||| || Sbjct 991228 TGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTG 991261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265382755913564