Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq40 390 1e-103
seq32 116 4e-21
seq11 104 3e-17
>seq40
Length=15643725
Score = 390 bits (432), Expect = 1e-103
Identities = 683/988 (69%), Gaps = 7/988 (1%)
Strand=Plus/Plus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106
|| |||||||| || |||| ||| |||| ||| || | ||| ||||| ||| || |||
Sbjct 4998289 TGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGACGTCCATGTCAAACTTA 4998348
Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166
|| || || | ||||| || | || ||||||| || || |||| |||||| | |
Sbjct 4998349 TTGGCAAAGAAGTGGTGC---TTGCGAAGCATCCAGTTCAAATCCCCGGCCCCGAAAATG 4998405
Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226
|| |||| || | ||||| |||| ||| |||||||| | || || | ||||||
Sbjct 4998406 CACACGGCGCGCACATGCACCCCGTCGCAGGGCGGGTAGGGTGCACCGCGGGACACGTCG 4998465
Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286
|||||| ||||||||||||| ||||||| ||| | || | |||||| || ||| ||
Sbjct 4998466 CCTTCGAAGTACTGCCACTTGACAAACCGGGCCACGGCGTTCATGTCAGACAGGTCATAC 4998525
Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346
|| | | || | || ||| || || |||| || | || | ||||||||| |||
Sbjct 4998526 TTATTGCTGGAGGACAAGGAACCTGGCACTTCGGGAATCCTTTGGATGGTGGCCCAGAGG 4998585
Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406
| || ||||| ||||||||||||| | ||| |||||||||| ||| | |||
Sbjct 4998586 TACTCATCGGGACTGTACGTGTCCTGCGCCCACTCCATGAACTTCTGGATGTGCTCATCC 4998645
Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466
| ||| | ||||| || | || ||||| || ||||| || ||||| |
Sbjct 4998646 TCTAACACGAATCTCACGTACTCCCTACTGACCACAAAATAGGCGCTACCTGAGAACAGA 4998705
Query 160467 GGTATGGGTATAGGCGGCG-TGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525
||| || | || |||| |||||| | || || |||||| | | ||| ||||
Sbjct 4998706 GGTGTGCTCAGGGGAGGCGGTGTCTT-GACCGTCCCCGTGTTAATGATCCGTCCGTTCAT 4998764
Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585
| | | ||||| ||||||| || ||| || | |||||| || ||||| ||
Sbjct 4998765 GATGACATAGTGCTTCCTCCACCTTTCCTCCTTATGGGCTGGCATCTTCTCTGTCTCCAG 4998824
Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645
|||| |||| || || | ||||| | | || ||||| ||||| || || | ||
Sbjct 4998825 GTTGTTTTCACCCCTGAATGACTGCAGCTTCCTAACCATCTCCAGGTTGGTTTTAATAGG 4998884
Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705
||| || | ||||||| || |||| ||| ||||| ||| || | ||| ||| ||
Sbjct 4998885 AAAATCCATGCCGCACAGATTGATCAAGTATTTCCAGCCCGCATGCATGGCGTACAGCTC 4998944
Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765
| ||||||| || | ||||||||||| || ||||| || || ||||| ||| |||| |
Sbjct 4998945 CTTCATGCAGTTGAGGTCTGCCTGCACCCGACTCCAAGATGCATACACCACGGTCTCCAA 4999004
Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAA 160825
|||||||| ||||||||| ||||||||| |||| |||| |||||| |||||
Sbjct 4999005 GCGGCTGGCCACGAAGACGTTACTGAAACACGATGCGATGCCCATCACCGCAGCTAAGAA 4999064
Query 160826 CATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884
||| || |||| ||||||||| | ||| || | ||||| ||| ||||||||
Sbjct 4999065 -GGCTTCCTCGGATTTCTTGTCCACGTGAATGCAGTAGAAATTCTGCGGCATGTAGATGG 4999123
Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944
||| || | ||| |||| ||| || ||||| ||||| | |||||| || ||||| || |
Sbjct 4999124 CCCGCAGGAGCCTGTCGAGCATTTCAATCTTGTGATGAACCACGATGGAATAGGCAATTG 4999183
Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004
| || | |||||| ||||||| | | || | |||||| ||||||||||| ||
Sbjct 4999184 GGAAGGCCACCTCCTCCTTGCTCAGGGGCTCTGTGATGTACTTGCGCGTCTTGATGAAGG 4999243
Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032
| |||| |||| |||||||| |||||
Sbjct 4999244 AGCCACAGTCCCTGGTCATGTTTATATA 4999271
>seq32
Length=16931008
Score = 116 bits (128), Expect = 4e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
|||||||| ||| |||| || |||| |||||| | ||||| || |||| | || |
Sbjct 10714288 AGATATTTCGCTAACTCACTGGGTGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 10714347
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
|||||||| || ||||| |||| || || ||||||| ||| | ||||| | | ||
Sbjct 10714348 GGAATGTAATTCTCATAGTTTTCCCTAGACGGTCCTAGAACAACAGGTACTGAGCCAGCC 10714407
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
|| || | ||||| |||||||| |||||| || |||| || |||||||||||||
Sbjct 10714408 AAAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATGGAGTTTTCAAAAGAA 10714467
Query 176412 AAATAGAACTTACA 176425
| ||| || |||||
Sbjct 10714468 AGATAAAATTTACA 10714481
>seq11
Length=20748735
Score = 104 bits (114), Expect = 3e-17
Identities = 196/288 (68%), Gaps = 3/288 (1%)
Strand=Plus/Plus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
||| || || || || |||| ||| || ||| || || ||||| | || ||| || |
Sbjct 6671812 GTCAAACTTGTTGGCCAACAAATGATG---GTTTTGGAGCATCCAATACAGGTCCCCAGT 6671868
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
||| | | |||| | || || || || |||||||| |||| | || ||||
Sbjct 6671869 CCCATAAATACAGATAGTCCGCTGGTAGACCCCCGTGCAAGGCTGGTAAGGTGCCCCTTC 6671928
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
| ||||| || | | ||||||||| || | |||||| || || | |||||| ||
Sbjct 6671929 ATTGATATCACCCTCATGTTCCTGCCACTTGACCAGCCTGGCAATGGCATTCATGTCTGA 6671988
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
| | || || |||| ||||||| | ||||| | | || ||||| |||||
Sbjct 6671989 GATATCATACTTGTGGTGAGGGGGAACTGAGCCGGGCATCCAGGAGGCCCGCTGAAGGGT 6672048
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384
|||||| ||| ||| || |||||||| |||||||||| |||||| ||
Sbjct 6672049 GGCCCAGAGGAATTCATCAGGGCTGTAGGTGTCCTTAGCCCATTCTAT 6672096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576748816858680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |