Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq40 390 1e-103 seq32 116 4e-21 seq11 104 3e-17 >seq40 Length=15643725 Score = 390 bits (432), Expect = 1e-103 Identities = 683/988 (69%), Gaps = 7/988 (1%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| || |||| ||| |||| ||| || | ||| ||||| ||| || ||| Sbjct 4998289 TGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGACGTCCATGTCAAACTTA 4998348 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || | || ||||||| || || |||| |||||| | | Sbjct 4998349 TTGGCAAAGAAGTGGTGC---TTGCGAAGCATCCAGTTCAAATCCCCGGCCCCGAAAATG 4998405 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || |||| || | ||||| |||| ||| |||||||| | || || | |||||| Sbjct 4998406 CACACGGCGCGCACATGCACCCCGTCGCAGGGCGGGTAGGGTGCACCGCGGGACACGTCG 4998465 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 |||||| ||||||||||||| ||||||| ||| | || | |||||| || ||| || Sbjct 4998466 CCTTCGAAGTACTGCCACTTGACAAACCGGGCCACGGCGTTCATGTCAGACAGGTCATAC 4998525 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | || ||| || || |||| || | || | ||||||||| ||| Sbjct 4998526 TTATTGCTGGAGGACAAGGAACCTGGCACTTCGGGAATCCTTTGGATGGTGGCCCAGAGG 4998585 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | || ||||| ||||||||||||| | ||| |||||||||| ||| | ||| Sbjct 4998586 TACTCATCGGGACTGTACGTGTCCTGCGCCCACTCCATGAACTTCTGGATGTGCTCATCC 4998645 Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466 | ||| | ||||| || | || ||||| || ||||| || ||||| | Sbjct 4998646 TCTAACACGAATCTCACGTACTCCCTACTGACCACAAAATAGGCGCTACCTGAGAACAGA 4998705 Query 160467 GGTATGGGTATAGGCGGCG-TGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 ||| || | || |||| |||||| | || || |||||| | | ||| |||| Sbjct 4998706 GGTGTGCTCAGGGGAGGCGGTGTCTT-GACCGTCCCCGTGTTAATGATCCGTCCGTTCAT 4998764 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 | | | ||||| ||||||| || ||| || | |||||| || ||||| || Sbjct 4998765 GATGACATAGTGCTTCCTCCACCTTTCCTCCTTATGGGCTGGCATCTTCTCTGTCTCCAG 4998824 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||| |||| || || | ||||| | | || ||||| ||||| || || | || Sbjct 4998825 GTTGTTTTCACCCCTGAATGACTGCAGCTTCCTAACCATCTCCAGGTTGGTTTTAATAGG 4998884 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 ||| || | ||||||| || |||| ||| ||||| ||| || | ||| ||| || Sbjct 4998885 AAAATCCATGCCGCACAGATTGATCAAGTATTTCCAGCCCGCATGCATGGCGTACAGCTC 4998944 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 | ||||||| || | ||||||||||| || ||||| || || ||||| ||| |||| | Sbjct 4998945 CTTCATGCAGTTGAGGTCTGCCTGCACCCGACTCCAAGATGCATACACCACGGTCTCCAA 4999004 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAA 160825 |||||||| ||||||||| ||||||||| |||| |||| |||||| ||||| Sbjct 4999005 GCGGCTGGCCACGAAGACGTTACTGAAACACGATGCGATGCCCATCACCGCAGCTAAGAA 4999064 Query 160826 CATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 ||| || |||| ||||||||| | ||| || | ||||| ||| |||||||| Sbjct 4999065 -GGCTTCCTCGGATTTCTTGTCCACGTGAATGCAGTAGAAATTCTGCGGCATGTAGATGG 4999123 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 ||| || | ||| |||| ||| || ||||| ||||| | |||||| || ||||| || | Sbjct 4999124 CCCGCAGGAGCCTGTCGAGCATTTCAATCTTGTGATGAACCACGATGGAATAGGCAATTG 4999183 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 | || | |||||| ||||||| | | || | |||||| ||||||||||| || Sbjct 4999184 GGAAGGCCACCTCCTCCTTGCTCAGGGGCTCTGTGATGTACTTGCGCGTCTTGATGAAGG 4999243 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 | |||| |||| |||||||| ||||| Sbjct 4999244 AGCCACAGTCCCTGGTCATGTTTATATA 4999271 >seq32 Length=16931008 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 |||||||| ||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 10714288 AGATATTTCGCTAACTCACTGGGTGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 10714347 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 |||||||| || ||||| |||| || || ||||||| ||| | ||||| | | || Sbjct 10714348 GGAATGTAATTCTCATAGTTTTCCCTAGACGGTCCTAGAACAACAGGTACTGAGCCAGCC 10714407 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || || | ||||| |||||||| |||||| || |||| || ||||||||||||| Sbjct 10714408 AAAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATGGAGTTTTCAAAAGAA 10714467 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 10714468 AGATAAAATTTACA 10714481 >seq11 Length=20748735 Score = 104 bits (114), Expect = 3e-17 Identities = 196/288 (68%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || |||| ||| || ||| || || ||||| | || ||| || | Sbjct 6671812 GTCAAACTTGTTGGCCAACAAATGATG---GTTTTGGAGCATCCAATACAGGTCCCCAGT 6671868 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | |||| | || || || || |||||||| |||| | || |||| Sbjct 6671869 CCCATAAATACAGATAGTCCGCTGGTAGACCCCCGTGCAAGGCTGGTAAGGTGCCCCTTC 6671928 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | ||||| || | | ||||||||| || | |||||| || || | |||||| || Sbjct 6671929 ATTGATATCACCCTCATGTTCCTGCCACTTGACCAGCCTGGCAATGGCATTCATGTCTGA 6671988 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | | || || |||| ||||||| | ||||| | | || ||||| ||||| Sbjct 6671989 GATATCATACTTGTGGTGAGGGGGAACTGAGCCGGGCATCCAGGAGGCCCGCTGAAGGGT 6672048 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||| ||| ||| || |||||||| |||||||||| |||||| || Sbjct 6672049 GGCCCAGAGGAATTCATCAGGGCTGTAGGTGTCCTTAGCCCATTCTAT 6672096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576748816858680