Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_020485.1 Length=34302 Score E Sequences producing significant alignments: (Bits) Value seq4931 544 2e-150 >seq4931 Length=27746 Score = 544 bits (602), Expect = 2e-150 Identities = 928/1329 (70%), Gaps = 34/1329 (3%) Strand=Plus/Plus Query 19349 TTATGTTAACATAGGAGCTCGCTGGTCACCAGATCCTATGGATAACGTAAATCCATTTAA 19408 |||| | ||||||||| | | |||||| |||| ||||| | || ||||||||||| Sbjct 16711 TTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAA 16770 Query 19409 CCATCACCGCAACGCAGGGCTTAGGTATCGTTCCATGCTGCTAGGAAACGGTCGAATTGT 19468 |||||| | || | || | ||||| | || ||| ||||||| ||||| || Sbjct 16771 TCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGC 16830 Query 19469 GCCGTTTCATATTCAAGTTCCTCAGAAATTTTTTGCCATTAAAAACTTGTTACTGCTGCC 19528 | ||||||||||| ||||| || || |||||||| |||||| ||| | ||||| || Sbjct 16831 TTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACC 16890 Query 19529 AGGCTCGTACACGTATGAGTGGAGCTTCCGCAAAGATGTCAATATGATTTTGCAAAGCAC 19588 || ||||||| || || ||| || | |||||||| || ||||||||||| || || Sbjct 16891 GGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950 Query 19589 GCTTGGAAATGATCTTCGAGTAGACGGTGCCAGCGTGCGCA----TTGACAGCGTTAACT 19644 ||||| |||||||| | | ||||| ||||| | | |||||||| ||| | Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGG----AGCGTCAGTAACATTTGACAGCATTAGCC 17006 Query 19645 TGTATGCCAACTTTTTTCCAATGGCCCACAATACCGCTTCAACTTTGGAGGCAATGCTGC 19704 | | ||| | || ||||| ||| | || || || ||||| ||| |||| | ||||| | Sbjct 17007 TATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTC 17066 Query 19705 GCAATGATACAAACGATCAGTCATTTAATGACTACCTT---AGCGCTGCCAACATGCTTT 19761 ||||||| ||||||||||| || ||||| ||| |||| | |||||||||| Sbjct 17067 GCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTT---AACATGCTTT 17123 Query 19762 ACCCAATTCCAGCCAATGCTACCAAC-GTTCCCATTTCAATTCCTTCAAGAAACTGGGCC 19820 | | ||||| | || | | |||| || || || || ||||| |||| || ||||| Sbjct 17124 ATGCTATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCG 17182 Query 19821 GCTTTCCGGGGATGGAGCTTTACTCGCATAAAAGCAAAAGAAACGCCGTCGTTGGGTTCT 19880 || || | || ||| |||||| | ||||| | | ||||| || | | || ||| Sbjct 17183 GCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCT 17242 Query 19881 GGCTTTGACCCGTACTTTGTTTATTCTGGGTCCATTCCTTACTTAGACGGCACATTCTAT 19940 | |||||||| |||||| || || || || || || || | || | || || ||| Sbjct 17243 GCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTAT 17302 Query 19941 TTGAACCACACCTTTAAACGTGTATCCATAATGTTTGACTCGTCGGTAAGCTGGCCTGGA 20000 || ||||| | | | || ||||| |||||| || || ||||| ||||||||| Sbjct 17303 TTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGA 17362 Query 20001 AACGATCGTCTACTAACTCCAAACGAGTTTGAAATAAAAAGGGTTGTAGACGGGGAAGGC 20060 || || | || ||| || || || ||| | |||||||| | || |||| ||||||| Sbjct 17363 AATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGC 17422 Query 20061 TATAACATAGCTCAAAGCAACATGACTAAGGATTGGTTTTTAATTCAAATGCTTAGTCAT 20120 ||||||| |||| |||| || ||||||||||||| | | ||||||||||| ||| Sbjct 17423 TATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCAC 17482 Query 20121 TACAACATTGGCTATCAGGGATTTTACGCACCAGAAGGCTACAAAGATCGCATGTACTCC 20180 ||||| || || || || || ||| || ||| || || |||||| | |||| ||| Sbjct 17483 TACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCC 17542 Query 20181 TTTTTCAGAAATTTTCAACCAATGAGCAGGCAAGTTGTGGATCCCACTGCTTACGCTG-- 20238 ||||| ||||||||| |||| ||| | || ||||||||||||| ||| | | | | Sbjct 17543 TTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATC---CTGGTAAGACGGAA 17599 Query 20239 -AATATCAGCAGGTTCCCCTTCCACGTCAGCATAACAATTCAGGGTTTGTAGGTTA-CAT 20296 ||||||| | ||| | ||| | ||||||||| |||||||| ||| | | || Sbjct 17600 AAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTAT 17659 Query 20297 GGGCCCTACCATTCGCG--AAGGGCAGCCTTA-CCCTGCAAATTACCCATACCCGCTGAT 20353 || |||| | ||| |||| || ||||| ||||| || | || | |||||| || Sbjct 17660 GGACCCT---TTGGGCGACAAGGCCATCCTTATCCCTG-TAACTGGCCTTTCCCGCTCAT 17715 Query 20354 TGGTCCAACA-GCTGTCCCGGCTATTACCCAGAAAAAATTTTTGTGCGACCGGGTTATGT 20412 || |||| || | | ||||| |||| ||||||||| || ||| | ||| Sbjct 17716 CGG-AGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGT 17774 Query 20413 GGCGCATTCCATTTTCTAGCAACTTCATGTCTATGGGAGCTCTAACAGATTTGGGACAAA 20472 || | ||||| || || |||||| ||||| |||||| | ||||||||| ||||||||| Sbjct 17775 GGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAA 17834 Query 20473 ACATGCTTTACGCTAACTCAGCTCACGCTTTGGACATGACTTTTGAAGTAGACCCCATGG 20532 | |||| || || || |||||||| ||||| |||||||| | |||||||| | |||| Sbjct 17835 ATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGG 17894 Query 20533 AGGAGCCAACGCTATTGTAT-ATGCTGTTTGAAGTGTTTGATGTTGTTAGGGTTCACCAG 20591 |||| ||||| ||| || ||||| |||||||| ||||| | || || || ||| Sbjct 17895 AGGAACCAAC-TTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAG 17953 Query 20592 CCCCACCGCGGCATTATTGAAGCCGTGTACCTGCGTACTCCTTTCTCTGCTGGAAACGCC 20651 || || || || | || |||| | || || | || || || || || || |||||| Sbjct 17954 CCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCC 18013 Query 20652 ACCACATAA 20660 | |||||| Sbjct 18014 GCAACATAA 18022 Score = 214 bits (236), Expect = 4e-51 Identities = 549/831 (66%), Gaps = 4/831 (0%) Strand=Plus/Plus Query 3932 TCCAGCGCTCGCGGTCATTAAGGACACGGTGGATTTTTTCCAAAACACGGTAGAGATGCG 3991 |||| ||||| |||||| ||| |||||||| |||||| |||| || || | | Sbjct 3488 TCCATCGCTCACGGTCACTAATAACACGGTGTATTTTTAGTAAAATTTCATATAGTTTAG 3547 Query 3992 TTTGAACATTAAGATACATGGGCATAAGTCCGTCTTTGGGGTGAAGGTATGCCCATTGTA 4051 | |||||||| | |||||| || | | | | || | | | || ||||||| Sbjct 3548 TCTGAACATTTAAATACATAGGGGTCAATTCACATTGCGCGCTCATATACATCCATTGTT 3607 Query 4052 GGGCTTCGTTTTCT-GGGGTGGTGTTGTAAATAATCCAATCGTAGGCCCCCCTTTGAGCA 4110 | ||| | | ||||||||| |||| | |||||||| || | | | | Sbjct 3608 GA-CTTTGACACGTAGGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAA 3666 Query 4111 TGGTGTTGAAAAATGTCTTTTAATAAAAGACTGATAGCTACAGGAAGACCCTTAGTGTAG 4170 |||| ||| || ||||||||||| || |||| |||| || || || ||||| || Sbjct 3667 TGGTAGGCAAAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAA 3726 Query 4171 GTATTAACAAAGCGATTAAGCTGCGAGGGATGCATTCTGGGGCTTATGAGATGCATTTTG 4230 ||||||| ||| | || ||||| | ||| |||||| ||||||| | | ||| ||| Sbjct 3727 GTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTA 3786 Query 4231 GCCTGAATTTTTAGGTTGGCAATGTTTCCTCCCAGGTCGCGGCGGGGGTTCATATTATGT 4290 || ||||||||||| ||| || ||||| | | || || ||||||||||||||| Sbjct 3787 GCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGT 3846 Query 4291 AAAACCACCAACACAGAATATCCGGTACAACGGGGAAATTTGTCATGTAATTTTGAAGGA 4350 || ||||| |||| | | || ||| | || |||| |||| ||| || |||||||||| Sbjct 3847 AATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGA 3906 Query 4351 AAGGCGTGAAAAAATTTTGAAACTCCTTTGTGTCCACCTAGGTTTTCCATGCATTCATCC 4410 || |||||||||||||||| || ||| || |||| |||||||| || ||||| Sbjct 3907 AACGCGTGAAAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCA 3966 Query 4411 ATAATTATAGCAATGGGTCCCCTAGCTGCAGCCTGAGCAAAAACGTTGCGGGGATCAGTC 4470 || || || || |||||||| | || ||||| |||| || |||| Sbjct 3967 ATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAATTTATTATTTGGATGCCCT 4026 Query 4471 ACGTCATAGTTGTGATCATGAGTGAGCTCCTCGTATGACATTTTTATAAAAAGAGGTCGC 4530 | ||||| || | || | ||| |||| ||| || | || || |||| Sbjct 4027 AAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGCGAATCGAGGAGTT 4086 Query 4531 AATGTTCCAGATTGGGGCACAATAGTACC-TTCAGGCCCTGGAGCATAATTTCCCTCACA 4589 ||||| |||| || |||||||| ||| ||| ||| | ||| |||||||| Sbjct 4087 AATGTACCAGTCTGAGGCACAATTTCACCATTCTTTCCCATG-TTATAGTTTCCCTCTAT 4145 Query 4590 TATTTGCATTTCCCAAGCTTTTATTTCGGAGGGAGGAATCATGTCTACTTGGGGGGCAAT 4649 ||||| || ||| | | ||||| || || ||||||||| | | |||| | Sbjct 4146 AATTTGTGCTTTCCATGACATAATTTCCTGTGGGGGGATCATGTCTGCATAAGGGGTTAC 4205 Query 4650 aaaaaaaaTAGTTTCTGGTGCGGGTGTAATTAATTGAGTGGAAAGCAAGTTGCGCAGCAG 4709 ||| || ||||| || || ||||| | | ||||| | || | | || | || | Sbjct 4206 AAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGACGACATAAGATTTCTCAATAA 4265 Query 4710 CTGGGATTTGCCACAGCCGGTGGGTCCATAAATGACAGCAATAACTGGCTG 4760 |||||||| |||| || || || ||||| ||||| |||| || || || Sbjct 4266 TTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCAATCACCGGTTG 4316 Score = 154 bits (170), Expect = 3e-33 Identities = 859/1341 (64%), Gaps = 69/1341 (5%) Strand=Plus/Plus Query 5351 TTTAAGAGCATACAGTTTTGGCGCCAAGAAAACGGATTCTGGGGAATAAGCAT-CTGA-- 5407 ||| |||||||||| ||||| || || || || || | ||||| ||| || |||| Sbjct 4901 TTTTAGAGCATACATCTTTGGAGCTAAAAACACAGACTTTGGGGCATATGCGGGCTGATT 4960 Query 5408 ACCGCAGTTGGCACATGTTGTTTCGCATTCTACTAACCAGGTCAACTGAGGA-CTTGCTG 5466 || || ||| ||| | |||| || |||||||||||||| || || |||| | |||| Sbjct 4961 ACAGC-GTTCGCA--TCTTGTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTC 5017 Query 5467 GGTCAAAAACCAGCGCGCCTCCGttttttttGATGCGCTTCTTACCTCGGGTTTCCATGA 5526 ||||| | | | ||||| ||| | | | ||||||| ||| ||||| | Sbjct 5018 A-TCAAAGATTAAATTATTGCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCA 5076 Query 5527 GGCGATGTCCTCGTTCTGTGACAAAAAGGCTGTCTGTGTCTCCGTAAACTGACTTGAGGG 5586 | | ||| ||| |||||| || || | ||||| || |||||||||| || || | Sbjct 5077 GTCTATGCCCTGTTTCTGTCACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAA 5136 Query 5587 A---GCGTTCTTCAAGGGGAATTCCCCGGTCCTCGGAGTATAGAAAATCAGACCACTCAG 5643 ||| || ||||| ||||| || || || |||| ||| || | ||| || | Sbjct 5137 TTCTGCGGTCC-CAAGGTCG--TCCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGG 5193 Query 5644 AAACAAACGCGCGTGTCCAAGCAAGAACAAATGAGGCAATGTGAGAAGGATAGCGATCGT 5703 || || ||||| ||||| || ||||||||||| || || || || || ||||| | | Sbjct 5194 AAGTGAAAGCGCGGGTCCAGGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTAT 5253 Query 5704 TGTTTATAAGGGGGTCTGTTTTTTCAAGAGTATGTAAGCACATGTCCCCTTCTTCAGCTT 5763 | | ||| | ||| || ||||| | | || | ||| | || || |||| || Sbjct 5254 TATCTATTTGTGGGGAAGTATTTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATT 5313 Query 5764 CCAAAAATGTGATTGGTTTGTAAGTGTAGGTCACGTGATTTGTTTCA----TTGCT---- 5815 ||| || |||||||| || | | || |||||||||| ||| ||| |||| Sbjct 5314 GCAAGAAAGTGATTGGCTTAAACTTATATGTCACGTGATCTGTGTCAGAATTTGCATATA 5373 Query 5816 --GGGACTATAAAAGG--GGGCGTTTCC------CCCCTCATCATCACTTTCTTCCGGTT 5865 | | |||| || |||| ||| | || ||||| |||| Sbjct 5374 AAGTGTCTATGGCGGGAGGGGCCTTTTTAGTTGGCGGTTCCGCATCATCGGAGCGCGGTA 5433 Query 5866 CGCTGTCTTCAAAGGTCAGCTGTTGGGGTACGTACTGACGTGAAAATGCAGGCATAACTT 5925 || || | ||| ||| | || | || || | || | ||| | || ||||| Sbjct 5434 CGTCATCG-CGAAGCGAAGCCGGTGAG-TA---ACAGGCG-GTGAATTCTGGGATAACAC 5487 Query 5926 GTGCGCTAAGGTTGTCAGTTTCTATATATGAGGAAGATTTGATGGAAATTGTTCCGGCAG 5985 | ||||| || || || || ||||| || ||| | | | || | | || | Sbjct 5488 GGGCGCTTAGATTATCTGTCTCTATGTAACAGGTGGCGCTTACAAAAGCTTTACCACTGG 5547 Query 5986 CTATGCCTTTTAA-ATGTT-CTGGCCCCATTTGGTCAGAAAACACAATTTGTCGGTTGTC 6043 ||||| |||| | |||| || | ||||| || | ||||| |||| | || || Sbjct 5548 CTATGTCTTTCATGATGTCACTTGTA--ATTTGATCCGGAAACAGTATTTTTTTATTATC 5605 Query 6044 AAGCTTAGTAGCAAATGACCCATAGAGGGCGTTAGAAAGTAGTTTAGCAATGGAGCGCTG 6103 | | | || ||||| || || || || ||||| || | |||||||| ||| ||||| Sbjct 5606 TAACCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTG 5665 Query 6104 TGT----TTG-GTTCTTTTCCCGATCGGCTTTTTCCTTGGCCGCAATGTTTAATTGC-AC 6157 ||| ||| | | |||| ||| |||| | || | ||||| || || | | || || Sbjct 5666 TGTGCTGTTGTGGTTTTTTTCCG--CGGCCTCTT---TTGCCGCTATATT-AGTGGCTAC 5719 Query 6158 ATATTCACGGGCTAAACAGTTCCAGCCTGG--AAACACGGTGGTGCGTTCGTCGGGAATT 6215 ||||| | || | || ||||| ||| ||| || || || || || || | Sbjct 5720 GTATTCTCTTGCCACGCAATTCCA--CTGCTCAAATACTGTAACTCGCTCATCTGGGACC 5777 Query 6216 AGTCTGACGTTCCAGCCGCGGTTGTGAAGTGTAATTACGTCTATGCTTGTAGCTACTTCA 6275 | || | ||||| || || || || | ||||| | || ||| || |||||| Sbjct 5778 AACCTAATCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCG 5837 Query 6276 CCGCGTAAGGGCTCGTTAGTCCAACACAGTCGTCCACCTTTGCGGGATCCAAAAGGAGGA 6335 || | ||| || || ||||| || || || || ||||| | || | ||| || || Sbjct 5838 CCTCTTAAATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGT 5897 Query 6336 AGAACATCTAAGTTGCGTTCATCTGGAGGGTCGGCGTCAATTGTAAAAATAGCAGGCAAA 6395 | ||||||||||| ||| | || | ||| || |||||| || ||| || || || Sbjct 5898 AAAACATCTAAGTATTCTTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAAC 5957 Query 6396 AGTTGTTTGTTAAAATAATCAATTATCTGTAACTTATTACTAAGGGCC---AATTCCCAG 6452 || || |||||| |||| | || || || | ||| | ||| | | Sbjct 5958 AGGGCAGGGTCAAAATAGGAAATTTT--GTCACCGGTTGCAAAGCGTTTTGAATACTGA- 6014 Query 6453 TCGCGTACGGCCAAAGCTCGTTCATATGGACTTAAGGGG-GCACCCCATGGCATAGGATG 6511 | | | ||||| || ||| | ||| ||||| || | || | ||||| ||||| Sbjct 6015 TAGAGA---GCCAAGTTTCTGTCAAAGGGA-TTAAGTGGTGGGCCAAAGGGCATGGGATG 6070 Query 6512 GGTTAAAGCTGAAGCGTACATGCCGCAAATGTCATAAACATAAATGGGCTCCTGAAGTAC 6571 ||||| || || ||||| ||| |||| |||||||||||||| || |||| || || Sbjct 6071 CGTTAATGCGCTGGCATACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAAC 6130 Query 6572 TCCAATGTAAGTTGGGTAACAGCGCCCTCCTCTGATGCTGGCGCGCACGTAGTCATAAAG 6631 || |||||||| ||||| || || || ||||||||||| | | || | ||||||| Sbjct 6131 ACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAAT 6190 Query 6632 CTCGTGTGAGGGAGCCAGTAG 6652 |||||||| || ||||| || Sbjct 6191 GTCGTGTGACGGGGCCAGAAG 6211 Score = 125 bits (138), Expect = 2e-24 Identities = 205/292 (70%), Gaps = 5/292 (2%) Strand=Plus/Plus Query 18756 GCTCCTAACCGCCCAAACTACATTGCTTTTCGGGACAACTTTATTGGCCTTATGTATTAC 18815 || || ||| | ||||| || || | |||| |||| |||||||| || | |||| ||| Sbjct 16142 GCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTAT 16201 Query 18816 AACAGCACGGGTAACATGGGTGTTTTGGCGGGACAGGCTTCGCAGTTAAATGCGGTAGTT 18875 ||||| | | || ||||||| || || || || | || ||| | ||||| || | Sbjct 16202 AACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATC 16261 Query 18876 GACCTTCAAGACAGAAACACTGAATTATCTTACCAGTTAATGCTTGATGCATTGGGAGAT 18935 ||||||||||||||||| || ||||| || || ||| | ||| | ||| || ||| Sbjct 16262 GACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGAT 16321 Query 18936 CGTACCAGGTACTTTTCA--ATGTGGAACCAAGCTGTTGACAGTTACGACCCAGATGTTA 18993 | || | || || || ||||||| ||||| || || || || ||||| || Sbjct 16322 AGAACTCGATA--TTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCC 16379 Query 18994 GAATAATAGAAAATCATGGGGTAGAAGATGAACTGCCTAACTACTG-TTTCC 19044 |||| ||||| ||| ||| |||||||| ||||| || || || || ||||| Sbjct 16380 GAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Score = 114 bits (126), Expect = 3e-21 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 25275 GAAATCGTATATTTCCCACCCTCTACGCTATTTTTCAGCAAAGCCGAGGTCAGCAGCAGG 25334 ||||| |||||||| || | || ||||| ||||| ||| |||| ||| | | Sbjct 22153 GAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAATGTC 22212 Query 25335 AACTGAAAATAAAAAATCGCACCCTCAGATCGCTTACCAGAAGCTGTCTGTACCACAAGA 25394 ||| ||||| ||||||||||| | ||||| ||||||| |||||||| || ||||| | Sbjct 22213 AACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCACAAAA 22272 Query 25395 GCGAAGATCAGCTGCAGCGCACGTTGGAGGACGCAGAAGCGCT 25437 |||||| ||||||||| | || |||| |||||||| ||||| Sbjct 22273 ACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCT 22315 Score = 107 bits (118), Expect = 4e-19 Identities = 215/314 (68%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 17853 AAGATGGCCACACCCTCGATGATGCCGCAATGGTCGTACATGCACATCGCCGGGCAGGAC 17912 ||||||||||| ||||||||| | ||||||||||| ||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 17913 GCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGTGCGACGGAAACCTACTT 17971 || || || || | | | | | | ||| || ||||| | || || ||||| ||||| Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 17972 CTCACTTGGCAACAAGTTCAGAAACCCAACCGTGGCTCCCACCCACGATGTCACCACCGA 18031 || || || | || || ||||| || || || || || || |||||||| || || || Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 18032 TCGGTCGCAACGGTTAACAATCCGCTTTGTCCCCGTTGACAAGGAAG--ACACCGCTTAC 18089 | ||||| | || | | | ||||| || | || || |||| |||| | ||| Sbjct 15490 AAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATAC 15549 Query 18090 TCCTACAAAACCCGCTTTACGCTGGCCGTAGGGGACAACAGGGTGTTGGATATGGCCAGC 18149 | | ||| |||| ||| || |||| || || ||||| | || ||| ||| || Sbjct 15550 T--TTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607 Query 18150 ACTTACTTTGACAT 18163 | ||| ||||| || Sbjct 15608 AGTTATTTTGATAT 15621 Score = 107 bits (118), Expect = 4e-19 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 23715 aaaaaaaTTGAAGAAACTCTTCACTACACATTCAGACACGGCTACGTAAAGCAAGCGTGC 23774 ||||||||||||||| || | || |||| || | | ||| || || || | || Sbjct 20755 AAAAAAATTGAAGAATCTATCCATTACATGTTTAAAACCGGTTATGTTAATGAGGCTATA 20814 Query 23775 AAAATTTCCAACGTGGAACTCAGTAACCTTATTTCATACTTGGGAATTTTGCACGAAAAC 23834 ||| || |||||| | ||| || || || || || || ||||| | || |||||| Sbjct 20815 AAAGTTAGCAACGTAAATATCACAAATCTCATATCTTATTTAGGAATCCTTCATGAAAAC 20874 Query 23835 AGACTGGGTCAAAACGTGCTACACAGCACTCTAAAAGGAGAGGCTCGACGGGACTACGTG 23894 | ||||||||||| || |||| | | ||||| ||| ||| | || || ||| | Sbjct 20875 CGTCTGGGTCAAAATGTTTTACATGGAAATCTAAGAGGGGAGTATAGATTAGATTACATA 20934 Query 23895 CGGGATTGCGTGTTTTTAATGCTGGTGTACACCTGGCAAACTGGAATGGGTGTATGGCAA 23954 || |||||| | |||||| | |||| ||||| |||||| | | |||||| | ||| | Sbjct 20935 CGTGATTGCATCTTTTTATTTTTGGTTTACACTTGGCAAGCAGCCATGGGTATCTGGAAT 20994 Query 23955 CAGTGCTTAGAAGA 23968 || ||||| |||| Sbjct 20995 CAATGCTTGCAAGA 21008 Score = 87.8 bits (96), Expect = 4e-13 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14747 AACACACGTTTTTAACCGCTTTCCCGAAAACCAAATATTGGTGCGTCCTCCAGCTCCCAC 14806 |||||| || || || | ||||| || || ||||| || | ||||| ||||||||||| Sbjct 13125 AACACATGTCTTCAATAGATTTCCTGATAATCAAATCTTAATCCGTCCACCAGCTCCCAC 13184 Query 14807 TATTACCACCGTTAGCGAAAACGTGCCCGCTCTAACTGATCACGGGACGCTGCCTTTGCA 14866 ||| | || | |||||||||||||| || | || |||||||| || | |||| | Sbjct 13185 AATTTGCTCCATCAGCGAAAACGTGCCATCTTTGACGGATCACGGAACAATTTCTTTAAA 13244 Query 14867 GAACAGCATCCGCGGAGTTCAGCGAGTTACCATCACGGACGCCCGTCGTCGGACCTGTCC 14926 ||| ||||| || | ||||| || | | || |||||| | | | || ||| Sbjct 13245 GAATAGCATTACTGGGATACAGCGTGTAATTTTAACAGACGCCAGAAGAAGAACGGTTCC 13304 Query 14927 CTACGTCTACAAAGCATTGGGAATCGTGGCCCC 14959 ||||| || ||| || ||||| || |||| Sbjct 13305 ATACGTATATAAAAGTTTAGGAATTGTTTCCCC 13337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109559916627824