Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_020487.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq4931 246 7e-61 >seq4931 Length=27746 Score = 246 bits (272), Expect = 7e-61 Identities = 1222/1926 (63%), Gaps = 70/1926 (4%) Strand=Plus/Plus Query 20260 CCCAATAGACCCAATTACATTGGTTTCAGAGACAATTTCATTGGGTTTATGTACTACAAC 20319 || || || || ||||| || ||||| || || || || || ||||| |||| || ||| Sbjct 16145 CCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAAC 16204 Query 20320 AGCACTGGCAATCTTGGGGTCCTGGCGGGGCAGGCGTCTCAGCTCAACGCTGTGGTGGAC 20379 || | | ||||| | || || | || || || |||| ||||| || ||||| | ||| Sbjct 16205 AGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGAC 16264 Query 20380 TTACAAGACAGAAACACTGAGCTGTCGTACCAACTGATGCTTGATGCGCTGAGTGATAGA 20439 | ||||||||||| || || |||| || || || ||| | ||| | |||||| Sbjct 16265 CTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGA 16324 Query 20440 ACGCGGTACTTTGCAA--TGTGGAATCAGGCTGTGGACAGTTATGATCCCGACGTGAGGA 20497 || || || || || |||||||||| || ||||| |||||||| || || | | Sbjct 16325 ACTCGATA--TTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAA 16382 Query 20498 TCATTGAAAACCATGGTTGTGAAGATGAAATGCCCAACTATTGCTTCCC----TCTGGGC 20553 |||| || || ||| ||||| ||| | || || |||||||| || ||||| Sbjct 16383 TCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGAT 16442 Query 20554 GGGGTTGGTCCAATAGAGAAGTGGATTGGTTTAAAAATCAACAAAACCGCCAATCCAGCT 20613 | | ||| || || | | || | | || ||||| | ||| | | Sbjct 16443 G----TTCTCCTATTGATTAT---ACTGCTGTTAAT-----CAAAATGGACAAGCAA--- 16487 Query 20614 ACTTTCAGTCAAGACAATGAAATATCTACGGACAATAGAATTGGTACTGGTAACATC-AA 20672 ||| | | |||| | || || | | || || | || || | || Sbjct 16488 ----TCAATAA---CAATAACC---CTGCGCAGGTTCTTATAGGCAAAGGAAATGTTGAA 16537 Query 20673 TGCCATGGAGATCAACATCCAGGCGAATCTGTGGCGGAGTTTCTTGTATTCCAACGTGGC 20732 ||| ||||| |||||||| ||| || |||||| || ||| ||||||| || | || Sbjct 16538 TGC-ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGC 16596 Query 20733 CCTCTACCTGCCCGACTCATACAAGATCACCCCCGATAACGTGGCCATCTCTGACAATGA 20792 || || |||||||| | || | ||| |||| || |||| | | | || | Sbjct 16597 GCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCA 16656 Query 20793 AAATTCATACGATTACATGAACGGGCGCATCGCCCCCGTAGGTCTGATCGATTACTTCAT 20852 ||| | ||||||||| ||||| | ||| |||||| | || | | || Sbjct 16657 GCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATAT 16716 Query 20853 AGATATCGGGGCCCGGTGGTCGCCCAACCCCATGGACAACGTCAACCCCTTCAACCACCA 20912 | || || || ||||||| | ||||||| || || || || || || || Sbjct 16717 CAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCA 16776 Query 20913 CCGCAACGCGGGGCTGCGCTACCGTTCCCAGATCCTGGGCAACGGCCGATACGTACCCTT 20972 | | || | || || | ||| | || ||| | | || || || || || | |||| Sbjct 16777 CAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTT 16836 Query 20973 CCACATCCAAGTGCCCCAAAAGTTCTTTGCCATCAAAAACCTCCTCCTGCTGCCCGGGTC 21032 || || || || || |||||||| ||||| | |||| | || ||||| || || || Sbjct 16837 TCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATC 16896 Query 21033 CTACACCTACGAGTGGACCTTCCGCAAGGACGTCAACATGATCCTGCAGAGCACGCTGGG 21092 |||| ||||| ||| | || | || || || |||||||| ||||||| || || || Sbjct 16897 GTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGG 16956 Query 21093 CAATGACCTGCGAGTGGATGGCGCCAAGGTCAGCATC----GACAGCGTCAACCTCTACG 21148 |||||| ||| | | ||| || || ||||| | | |||||| | | ||| | | Sbjct 16957 CAATGATCTGAGGGAGGACGGAGC----GTCAGTAACATTTGACAGCATTAGCCTATTTG 17012 Query 21149 CCAACTTCTTCCCCATGGCCCACAACACCGCTTCCACCCTGGAAGCCATGCTCCGCAACG 21208 | | ||||| || ||| | || ||||| ||||| || |||||| | ||||| ||||| | Sbjct 17013 CTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATG 17072 Query 21209 ACACCAATGACCAAAACTTCAACGACTACCTCAGCGGAGCCAACATGCTCTACCCTATCC 21268 | || || || |||| |||||| || | | | |||||||| || |||| | Sbjct 17073 AGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTC 17132 Query 21269 CGGCCAACGCCACCAAC-GTGCCCATCTCCATCCCCTCGAGAAACTGGGCCGCCTTCCGA 21327 | | | | | |||| ||||| ||||| || || | || || ||||| ||||| || Sbjct 17133 CTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191 Query 21328 GGCTGGAGCTTCACCCGCATCAAGGCCAAGGAAACCCCCTCCATCGGGGCCGGTTTCGAC 21387 || ||| || || | | || ||||||| || |||| || | | || ||| Sbjct 17192 GGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGAC 17251 Query 21388 CCCTATTTCAACTACTCGGGCACCATTCCCTACCTCGATGGCACCTTCTACCTCAACCAC 21447 || || || | ||||||||| | || || || |||| ||||| || | ||| Sbjct 17252 CCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCAC 17311 Query 21448 ACCTTCCGCCGCGTCTCCATCATGTATGACTCCTCCGTCAGCTGGCCGGGCAACGACCGC 21507 || || | || |||| || ||| || || || || ||||| || || ||| | Sbjct 17312 ACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGA 17371 Query 21508 CTGCTCACGCCCAACGAGTTTGAAATCAAACGGGCCGTGGACGGAGAGGGCTACACCGTC 21567 || | | || || || ||| | || ||| | | ||||||| || ||||| | | | Sbjct 17372 CTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACC 17431 Query 21568 TGCCAGAGTAACATGACCAAGGACTGGTTCCTCATCCAGATGTTGAGCCACTACAACATC 21627 | ||||| | || || ||||| |||| | || || ||| | |||||||| ||| Sbjct 17432 TCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATC 17491 Query 21628 GGATACC-AGGGCTTCTTCGCCCCCGAGTCCTACAAGGACCGGCTGTACTCCTTCTTCCG 21686 ||||||| ||| ||| | ||| || || || || | |||| ||||| || | Sbjct 17492 GGATACCAAGGTTTTCACCTACCCACAGAT-TATAAAGATAGATTGTATTCCTTTTTAAG 17550 Query 21687 CAACTTCCAGCCCATGAGCAGGCAGGTGGTCGACCCCATCAACTACAAGGACTACAAGAA 21746 || || | |||||| | || || || || || || || | ||| | || Sbjct 17551 AAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAG---ACGGA-----AAAA 17602 Query 21747 GGTCA--CCGT-GCGCT-----ACCAGCACAACAACACGGGCTTCACGGGCGATG-TCAC 21797 ||| |||| || || | ||||| || || | || || | | || | Sbjct 17603 TATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGA 17662 Query 21798 CCCCGCGGCCATCCGGGAGGGACACGCCTACCCCGCCAACGCCCCCTACCCCCTCATCGG 21857 ||| || | | | || || | || ||| ||| || | ||| |||||||| Sbjct 17663 CCCTTTGGGCGAC----AAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGG 17718 Query 21858 GGCCACCGCGGTGCCCTCGCTCACCCAGAAAAAGTTCCTCTGCGACCGCGTCATGTGGCG 21917 | || | | | || |||| ||| || | || ||| | ||||| | Sbjct 17719 AGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAG 17778 Query 21918 CATCCCCTTCTCCTCCAACTTCATGTCCATGGGCGCCCTCACCGACCTGGGGCAGAACAT 21977 || || |||||||||||||| ||||||||||| | || || || ||||| || || | Sbjct 17779 GATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTT 17838 Query 21978 GCTCTACGCCAACTCGGCCCACGCCCTGGACATGACCTTCGAGGTCGACCCCATGGACGA 22037 ||| || || || || || || || | |||||||| |||| || || | ||||| || Sbjct 17839 GCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGA 17898 Query 22038 GCCCACCCTGCTGTATG-TCTTGTTTGAAGTCTTTGACGTGGTCCGCGTGCACCAACCTC 22096 || || || ||| | | |||||||| |||||| || | | ||||| || |||| Sbjct 17899 ACCAACTTATCT-CATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTC 17957 Query 22097 ACAGGGGCGTCATCGAGGCCGTCTACCTGCGTACCCCATTCTCGGCTGGTAACGCCACCA 22156 | | || ||||| || | | || || | ||||| || ||||| ||||||||| | | Sbjct 17958 AACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAA 18017 Query 22157 CATAAA 22162 |||||| Sbjct 18018 CATAAA 18023 Score = 116 bits (128), Expect = 9e-22 Identities = 260/387 (67%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 19367 CGAAGATGGCGACCCCCTCGATGATGCCGCAATGGTCTTACATGCACATCGCCGGTCAGG 19426 |||||||||| || ||||||||| | ||||||||||||||| | || ||||| || || | Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368 Query 19427 ATGCTACGGAGTACCTGAGTCCGGGTCTGGTGCAGTTTGCCCGGGCGACGGAAAGCTACT 19486 ||||| | || || | ||| | || || ||||| | || || |||| |||| Sbjct 15369 ATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACT 15428 Query 19487 TTTCTCTGGGCAACAAGTTCAGGAACCCGACGGTGGCTCCGACCCACGATGTGACCACGG 19546 |||| || || | || || || || |||||||| || ||||| |||||||| || |||| Sbjct 15429 TTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGG 15488 Query 19547 ACCGTTCCCAGCGTCTGACGCTGCGCTTCGTGCCCGTGGACAAGGAGG--ACACCGTGTA 19604 | | || ||| | || | | || || || | ||| || || | |||| || || Sbjct 15489 AAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATA 15548 Query 19605 CTCCCACAAGTGCCGCTTCACCCTGGCGGTGGGCGACAACCGCGTGCTGGACATGGCCAG 19664 || | ||| ||| || || | || || || ||| | | | || ||| || Sbjct 15549 CTTTTA-AAG-CCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAG 15606 Query 19665 CACTTACTTTGACATCCGCGGGACCATCGACCGGGGGCCCAGCTTCAAACCCTACAGCGG 19724 | ||| ||||| || || | || ||| | || ||| || ||||| ||||| || Sbjct 15607 TAGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGG 15666 Query 19725 CACCGCCTACAACTGCCTCGCCCCCAA 19751 ||| || ||||| ||| ||||| || Sbjct 15667 CACAGCATACAATAACCTTGCCCCGAA 15693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117668834108800