Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_020487.1
Length=36838
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 246 7e-61
>seq4931
Length=27746
Score = 246 bits (272), Expect = 7e-61
Identities = 1222/1926 (63%), Gaps = 70/1926 (4%)
Strand=Plus/Plus
Query 20260 CCCAATAGACCCAATTACATTGGTTTCAGAGACAATTTCATTGGGTTTATGTACTACAAC 20319
|| || || || ||||| || ||||| || || || || || ||||| |||| || |||
Sbjct 16145 CCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAAC 16204
Query 20320 AGCACTGGCAATCTTGGGGTCCTGGCGGGGCAGGCGTCTCAGCTCAACGCTGTGGTGGAC 20379
|| | | ||||| | || || | || || || |||| ||||| || ||||| | |||
Sbjct 16205 AGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGAC 16264
Query 20380 TTACAAGACAGAAACACTGAGCTGTCGTACCAACTGATGCTTGATGCGCTGAGTGATAGA 20439
| ||||||||||| || || |||| || || || ||| | ||| | ||||||
Sbjct 16265 CTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGA 16324
Query 20440 ACGCGGTACTTTGCAA--TGTGGAATCAGGCTGTGGACAGTTATGATCCCGACGTGAGGA 20497
|| || || || || |||||||||| || ||||| |||||||| || || | |
Sbjct 16325 ACTCGATA--TTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAA 16382
Query 20498 TCATTGAAAACCATGGTTGTGAAGATGAAATGCCCAACTATTGCTTCCC----TCTGGGC 20553
|||| || || ||| ||||| ||| | || || |||||||| || |||||
Sbjct 16383 TCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGAT 16442
Query 20554 GGGGTTGGTCCAATAGAGAAGTGGATTGGTTTAAAAATCAACAAAACCGCCAATCCAGCT 20613
| | ||| || || | | || | | || ||||| | ||| | |
Sbjct 16443 G----TTCTCCTATTGATTAT---ACTGCTGTTAAT-----CAAAATGGACAAGCAA--- 16487
Query 20614 ACTTTCAGTCAAGACAATGAAATATCTACGGACAATAGAATTGGTACTGGTAACATC-AA 20672
||| | | |||| | || || | | || || | || || | ||
Sbjct 16488 ----TCAATAA---CAATAACC---CTGCGCAGGTTCTTATAGGCAAAGGAAATGTTGAA 16537
Query 20673 TGCCATGGAGATCAACATCCAGGCGAATCTGTGGCGGAGTTTCTTGTATTCCAACGTGGC 20732
||| ||||| |||||||| ||| || |||||| || ||| ||||||| || | ||
Sbjct 16538 TGC-ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGC 16596
Query 20733 CCTCTACCTGCCCGACTCATACAAGATCACCCCCGATAACGTGGCCATCTCTGACAATGA 20792
|| || |||||||| | || | ||| |||| || |||| | | | || |
Sbjct 16597 GCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCA 16656
Query 20793 AAATTCATACGATTACATGAACGGGCGCATCGCCCCCGTAGGTCTGATCGATTACTTCAT 20852
||| | ||||||||| ||||| | ||| |||||| | || | | ||
Sbjct 16657 GCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATAT 16716
Query 20853 AGATATCGGGGCCCGGTGGTCGCCCAACCCCATGGACAACGTCAACCCCTTCAACCACCA 20912
| || || || ||||||| | ||||||| || || || || || || ||
Sbjct 16717 CAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCA 16776
Query 20913 CCGCAACGCGGGGCTGCGCTACCGTTCCCAGATCCTGGGCAACGGCCGATACGTACCCTT 20972
| | || | || || | ||| | || ||| | | || || || || || | ||||
Sbjct 16777 CAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTT 16836
Query 20973 CCACATCCAAGTGCCCCAAAAGTTCTTTGCCATCAAAAACCTCCTCCTGCTGCCCGGGTC 21032
|| || || || || |||||||| ||||| | |||| | || ||||| || || ||
Sbjct 16837 TCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATC 16896
Query 21033 CTACACCTACGAGTGGACCTTCCGCAAGGACGTCAACATGATCCTGCAGAGCACGCTGGG 21092
|||| ||||| ||| | || | || || || |||||||| ||||||| || || ||
Sbjct 16897 GTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGG 16956
Query 21093 CAATGACCTGCGAGTGGATGGCGCCAAGGTCAGCATC----GACAGCGTCAACCTCTACG 21148
|||||| ||| | | ||| || || ||||| | | |||||| | | ||| | |
Sbjct 16957 CAATGATCTGAGGGAGGACGGAGC----GTCAGTAACATTTGACAGCATTAGCCTATTTG 17012
Query 21149 CCAACTTCTTCCCCATGGCCCACAACACCGCTTCCACCCTGGAAGCCATGCTCCGCAACG 21208
| | ||||| || ||| | || ||||| ||||| || |||||| | ||||| ||||| |
Sbjct 17013 CTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATG 17072
Query 21209 ACACCAATGACCAAAACTTCAACGACTACCTCAGCGGAGCCAACATGCTCTACCCTATCC 21268
| || || || |||| |||||| || | | | |||||||| || |||| |
Sbjct 17073 AGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTC 17132
Query 21269 CGGCCAACGCCACCAAC-GTGCCCATCTCCATCCCCTCGAGAAACTGGGCCGCCTTCCGA 21327
| | | | | |||| ||||| ||||| || || | || || ||||| ||||| ||
Sbjct 17133 CTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191
Query 21328 GGCTGGAGCTTCACCCGCATCAAGGCCAAGGAAACCCCCTCCATCGGGGCCGGTTTCGAC 21387
|| ||| || || | | || ||||||| || |||| || | | || |||
Sbjct 17192 GGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGAC 17251
Query 21388 CCCTATTTCAACTACTCGGGCACCATTCCCTACCTCGATGGCACCTTCTACCTCAACCAC 21447
|| || || | ||||||||| | || || || |||| ||||| || | |||
Sbjct 17252 CCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCAC 17311
Query 21448 ACCTTCCGCCGCGTCTCCATCATGTATGACTCCTCCGTCAGCTGGCCGGGCAACGACCGC 21507
|| || | || |||| || ||| || || || || ||||| || || ||| |
Sbjct 17312 ACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGA 17371
Query 21508 CTGCTCACGCCCAACGAGTTTGAAATCAAACGGGCCGTGGACGGAGAGGGCTACACCGTC 21567
|| | | || || || ||| | || ||| | | ||||||| || ||||| | | |
Sbjct 17372 CTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACC 17431
Query 21568 TGCCAGAGTAACATGACCAAGGACTGGTTCCTCATCCAGATGTTGAGCCACTACAACATC 21627
| ||||| | || || ||||| |||| | || || ||| | |||||||| |||
Sbjct 17432 TCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATC 17491
Query 21628 GGATACC-AGGGCTTCTTCGCCCCCGAGTCCTACAAGGACCGGCTGTACTCCTTCTTCCG 21686
||||||| ||| ||| | ||| || || || || | |||| ||||| || |
Sbjct 17492 GGATACCAAGGTTTTCACCTACCCACAGAT-TATAAAGATAGATTGTATTCCTTTTTAAG 17550
Query 21687 CAACTTCCAGCCCATGAGCAGGCAGGTGGTCGACCCCATCAACTACAAGGACTACAAGAA 21746
|| || | |||||| | || || || || || || || | ||| | ||
Sbjct 17551 AAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAG---ACGGA-----AAAA 17602
Query 21747 GGTCA--CCGT-GCGCT-----ACCAGCACAACAACACGGGCTTCACGGGCGATG-TCAC 21797
||| |||| || || | ||||| || || | || || | | || |
Sbjct 17603 TATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGA 17662
Query 21798 CCCCGCGGCCATCCGGGAGGGACACGCCTACCCCGCCAACGCCCCCTACCCCCTCATCGG 21857
||| || | | | || || | || ||| ||| || | ||| ||||||||
Sbjct 17663 CCCTTTGGGCGAC----AAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGG 17718
Query 21858 GGCCACCGCGGTGCCCTCGCTCACCCAGAAAAAGTTCCTCTGCGACCGCGTCATGTGGCG 21917
| || | | | || |||| ||| || | || ||| | ||||| |
Sbjct 17719 AGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAG 17778
Query 21918 CATCCCCTTCTCCTCCAACTTCATGTCCATGGGCGCCCTCACCGACCTGGGGCAGAACAT 21977
|| || |||||||||||||| ||||||||||| | || || || ||||| || || |
Sbjct 17779 GATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTT 17838
Query 21978 GCTCTACGCCAACTCGGCCCACGCCCTGGACATGACCTTCGAGGTCGACCCCATGGACGA 22037
||| || || || || || || || | |||||||| |||| || || | ||||| ||
Sbjct 17839 GCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGA 17898
Query 22038 GCCCACCCTGCTGTATG-TCTTGTTTGAAGTCTTTGACGTGGTCCGCGTGCACCAACCTC 22096
|| || || ||| | | |||||||| |||||| || | | ||||| || ||||
Sbjct 17899 ACCAACTTATCT-CATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTC 17957
Query 22097 ACAGGGGCGTCATCGAGGCCGTCTACCTGCGTACCCCATTCTCGGCTGGTAACGCCACCA 22156
| | || ||||| || | | || || | ||||| || ||||| ||||||||| | |
Sbjct 17958 AACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAA 18017
Query 22157 CATAAA 22162
||||||
Sbjct 18018 CATAAA 18023
Score = 116 bits (128), Expect = 9e-22
Identities = 260/387 (67%), Gaps = 4/387 (1%)
Strand=Plus/Plus
Query 19367 CGAAGATGGCGACCCCCTCGATGATGCCGCAATGGTCTTACATGCACATCGCCGGTCAGG 19426
|||||||||| || ||||||||| | ||||||||||||||| | || ||||| || || |
Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368
Query 19427 ATGCTACGGAGTACCTGAGTCCGGGTCTGGTGCAGTTTGCCCGGGCGACGGAAAGCTACT 19486
||||| | || || | ||| | || || ||||| | || || |||| ||||
Sbjct 15369 ATGCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACT 15428
Query 19487 TTTCTCTGGGCAACAAGTTCAGGAACCCGACGGTGGCTCCGACCCACGATGTGACCACGG 19546
|||| || || | || || || || |||||||| || ||||| |||||||| || ||||
Sbjct 15429 TTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGG 15488
Query 19547 ACCGTTCCCAGCGTCTGACGCTGCGCTTCGTGCCCGTGGACAAGGAGG--ACACCGTGTA 19604
| | || ||| | || | | || || || | ||| || || | |||| || ||
Sbjct 15489 AAAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATA 15548
Query 19605 CTCCCACAAGTGCCGCTTCACCCTGGCGGTGGGCGACAACCGCGTGCTGGACATGGCCAG 19664
|| | ||| ||| || || | || || || ||| | | | || ||| ||
Sbjct 15549 CTTTTA-AAG-CCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAG 15606
Query 19665 CACTTACTTTGACATCCGCGGGACCATCGACCGGGGGCCCAGCTTCAAACCCTACAGCGG 19724
| ||| ||||| || || | || ||| | || ||| || ||||| ||||| ||
Sbjct 15607 TAGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGG 15666
Query 19725 CACCGCCTACAACTGCCTCGCCCCCAA 19751
||| || ||||| ||| ||||| ||
Sbjct 15667 CACAGCATACAATAACCTTGCCCCGAA 15693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117668834108800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |