Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq22 84.2 1e-11 >seq22 Length=17426531 Score = 84.2 bits (92), Expect = 1e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || | |||||||||||| | ||| | || | |||||| || | | ||||| || Sbjct 1409109 CATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGCTCTTCCTT 1409168 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||| |||| ||| | ||| ||||| || ||| | ||||| ||||||| | Sbjct 1409169 TCCTGTG-TTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGTTCTAGGT 1409227 Query 26052 AGATAGCAAA 26061 | |||||||| Sbjct 1409228 AAATAGCAAA 1409237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252838949677475