Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_021168.1 Length=34391 Score E Sequences producing significant alignments: (Bits) Value seq4931 489 3e-134 >seq4931 Length=27746 Score = 489 bits (542), Expect = 3e-134 Identities = 1033/1528 (68%), Gaps = 32/1528 (2%) Strand=Plus/Plus Query 18999 ATGGACAACGTCAACCCGTTTAATCACCACCGAAACGCCGGGCTCCGTTACCGCTCTATG 19058 ||||||| || || || |||||||| ||| |||| | || | | ||| | ||| | Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807 Query 19059 CTTTTGGGTAACGGACGGTACGTGCCCTTCCACATTCAAGTGCCCCAGAAATTCTTCGCC 19118 || || || || || || || | |||| || ||||| || || || || || || || Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCA 16867 Query 19119 ATTAAAAACCTTTTGCTGCTACCAGGTTCGTACACGTATGAATGGAACTTCAGGAAGGAC 19178 |||||| | | |||||||| || ||||||| || |||||| || || || || Sbjct 16868 CTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGAT 16927 Query 19179 GTGAACATGATTTTGCAGAGCACGCTTGGTAACGACTTACGGGTGGACGGTGC--CAGCA 19236 || ||||||||||||||||| || ||||| || || | ||| |||||| || ||| Sbjct 16928 GTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAG-- 16985 Query 19237 TACGATTTGACAGCATTAACTTATACGCCAATTTCTTTCCGATGGCGCATAACACTGCTT 19296 || |||||||||||||| | ||| || | ||||||||||||| | ||||||||||||| Sbjct 16986 TAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTT 17045 Query 19297 CTACTCTGGAGGCCATGCTGCGCAACGATACTAACGACCAGTCGTTCAACGACTACCTGT 19356 |||||||||| | ||||| ||||| || |||||| ||||| ||| |||||| || | Sbjct 17046 CTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTT 17105 Query 19357 GCGCTGCTAACATGCTGTACCCCATTCC-CAGCAATGCCACCAGCGTGCCTATTTCTATC 19415 | | ||||||||| || | ||||| | || || || | |||||||| ||||| Sbjct 17106 CCAGCGTTAACATGCTTTATGCTATTCCTCCGC-ATCAAACAACAGTGCCTATCTCTATT 17164 Query 19416 CCATCAAGAAACTGGGCCGCCTTTAGAGGATGGAGCTTTACCCGACTAAAAACGAAGGAA 19475 ||| |||| || ||||| ||||||||||| ||| ||||| |||||||| ||||| Sbjct 17165 CCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAA 17224 Query 19476 ACGCCTTCCCTGGGCTCAGGCTTTGATCCCTACTTTGTGTACTCTGGCTCCATTCCTTAC 19535 || || || | ||||| | ||||| || |||||| |||||| ||||| || || || Sbjct 17225 ACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTAT 17284 Query 19536 CTGGATGGTACATTTTACCTAAATCACACCTTCAAAAAAGTGTCTATTATGTTTGACTCG 19595 ||||| || ||||| || |||||| ||| ||| ||| | || |||||| || Sbjct 17285 TGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCT 17344 Query 19596 TCCGTGAGCTGGCCAGGTAATGACCGCCTTCTCACCCCTAACGAGTTTGAAATTAAGCGC 19655 || || || ||||| || |||||| | ||| | | ||||| || ||| | || || | Sbjct 17345 TCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGA 17404 Query 19656 TCAGTGGACGGAGAAGGCTACAACGTAGCTCAAAGCAATATGACTAAGGACTGGTTTTTA 19715 ||||||| |||||||| ||| |||| |||| || |||||||| |||| | | Sbjct 17405 GAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATG 17464 Query 19716 ATTCAAATGTTAAGTCACTACAACATCGGCTACCAAGGCTTCTACGTGCCGGAGTCATAC 19775 ||||||||| | ||||||||| ||||| |||||||| || || | || || Sbjct 17465 ATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTAT 17524 Query 19776 AAAGACAGAATGTACTCCTTCTTCAGAAACTTCCAGCCGATGAGTCGTCAAGTGGTAGAC 19835 ||||| ||| |||| ||||| || ||||| || | || ||| || | ||||| || || Sbjct 17525 AAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGAT 17584 Query 19836 ACCGTTAACTATGCTAACTACAAAGAGGTCAAAATGCCATTCCAGCACAACAACTCTGGC 19895 | | ||| | || || || || | || ||||| || || || || Sbjct 17585 CCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGT 17644 Query 19896 TTCGTGGGTTACAT--GGGTCCCACCATGAGGGAGGGACAGGCGTACCCCGCCAATTATC 19953 || | ||| || ||| | | | || || | || ||| || | | Sbjct 17645 TT--TAAAAACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGC 17702 Query 19954 CCTATCCACTTATTGGAGAAACGGCAGTGCCTAGTGTCACCCAGAAAAAGTTTCTGTGCG 20013 | | || || || |||||| ||||| | | || |||| ||| ||| | || | Sbjct 17703 CTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTG 17762 Query 20014 ACAGGGTGATGTGGAGAATTCCCTTTTCTAGCAACTTTATGTCTATGGGGGCTTTAACCG 20073 |||| ||||||| ||||| || || |||||||||||| ||||| | |||| | Sbjct 17763 ACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAG 17822 Query 20074 ATCTGGGGCAGAACATGCTGTATGCCAACTCCGCTCATGCCTTGGACATGACTTTTGAGG 20133 ||||||| || || |||| ||||| || || |||||||| || |||||||| | || | Sbjct 17823 ATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAG 17882 Query 20134 TGGATCCCATGGATGAGCCCACGCTTCTTTATG-TTTTGTTTGAAGTCTTCGACGTGGTG 20192 | ||| | ||||| || || || || | ||| | | |||||||| || ||| | ||| Sbjct 17883 TAGATTCAATGGAGGAACCAACTTATC-TCATGATGCTATTTGAAGTATTTGACAT-GTG 17940 Query 20193 C-GCATCCATCAGCCGCACCGCGGCGTCATCGAGGCTGTCTACCTGCGCACGCCTTTCTC 20251 | | | |||||||| || || || ||||| || | | | || || | || || || || Sbjct 17941 CAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTC 18000 Query 20252 TGCCGGCAACGCCACCACCTAAGAAGCCAATGGGCTCCAGCGAACAGGAGCTGCGGAGCA 20311 || || |||||| | || ||| ||||| || || | || | | | Sbjct 18001 GGCAGGTAACGCCGCAACATAA-----ATATGGGGACCTCAGAGGACGAAATAAAACGAA 18055 Query 20312 TTGTGCGCGATCTGGGCTGCGGACCTTATTTTTTAGGCACTTTCGACAAACGCTTTCCGG 20371 || | |||| || | ||||| |||||| || || | || ||||||||||||| Sbjct 18056 TTATCTCCGATTTG---AATGTACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGG 18112 Query 20372 GCTTTATGTCCCCCCAAAAGCCGG-----CCTGTGCCATTGTCAACACGGCAGGACGGGA 20426 | ||||| || ||| | | | |||||||||||| ||||| | || || Sbjct 18113 GGTTTAT-----CCGAAAGGACAGGTTATGCTGTGCCATTGTAAACACCGGGCTTCGCGA 18167 Query 20427 AACCGGCGGAGTGCACTGGTTAGCTTTTGCCTGGAATCCGCAAAACCGAACGTGCTACCT 20486 | ||||| || || ||| | || ||||| |||||||| | | ||| | ||| | Sbjct 18168 AGAGGGCGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCTATATTAAAACATTTTACAT 18227 Query 20487 GTTTGACCCTTTTGGTTTTTCAGATGAA 20514 |||||| || || || || || ||| || Sbjct 18228 GTTTGATCCATTCGGATTCTCGGATCAA 18255 Score = 143 bits (158), Expect = 6e-30 Identities = 214/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 18368 TCAGCAAGCGGCTCCCAATCGGCCTAACTACATTGGCTTCAGAGACAACTTTATTGGCTT 18427 ||||||| || || || |||| || || || || || || || |||||||| || || Sbjct 16132 TCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTT 16191 Query 18428 AATGTACTACAATTCTACTGGAAACATGGGCGTTTTGGCCGGTCAGGCGTCTCAACTGAA 18487 ||||| || || || | | || |||| || || |||||||| |||| || || || Sbjct 16192 AATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAA 16251 Query 18488 TGCTGTGGTGGATCTCCAAGACAGGAACACCGAACTGTCGTATCAGCTTATGCTTGATGC 18547 |||||| | || || |||||||| || || ||| |||| |||||||||||| | ||| Sbjct 16252 TGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAA 16311 Query 18548 CTTGGGGGATCGCAGCCGCTATTTTTCTATGTGGAACCAGGCCGTAGATAGTTATGATCC 18607 || ||| | | || |||| ||||||| || ||||| ||| |||||||| Sbjct 16312 TTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCC 16371 Query 18608 GGACGTAAGGATTATTGAGAACCACGGTGTAGAAGACGAGCTACCAAACTACTGCTTTCC 18667 || || | || || || || || ||||||||||| || ||||| || |||||||| Sbjct 16372 AGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Query 18668 GCTA 18671 | || Sbjct 16432 GTTA 16435 Score = 141 bits (156), Expect = 2e-29 Identities = 218/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 3801 AAGATGTCTTTTAGAAGCAAGCTAATAGCTAAGGGAAGGCCTTTGGTGTAGGTGTTGACA 3860 ||||| ||||||| | | | | || |||||||| |||||||| || || || || | | Sbjct 3676 AAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATA 3735 Query 3861 AAGCGATTAAGCTGTGAGGGATGCATGCGAGGGGAGATGATGTGCATTTTAGCCTGGATC 3920 || | || ||||| | ||| ||||| ||| | || || |||||| || || Sbjct 3736 AATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATT 3795 Query 3921 TTAAGGTTAGCAATATTGCCCCCCAGGTCTCTGCGAGGATTCATGTTATGCAACACCACC 3980 || || | | ||||| || | | ||| | || || ||||| ||||| || ||||| Sbjct 3796 TTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACA 3855 Query 3981 AACACGGTGTACCCGGTGCATTTGGGGAACTTGTCATGTAGCTTTGAAGGAAAGGCGTGA 4040 |||| ||||||| |||| ||| | || ||| ||| ||||||||||| |||||| Sbjct 3856 AACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGA 3915 Query 4041 AAGAATTTGGAAACCCCTTTGTGCCCTCCTAGGTTTTCCATGCATTCGTCCATAATAATG 4100 || ||||| | || ||| |||||||| |||||||| || || || || |||||| Sbjct 3916 AAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATG 3975 Query 4101 GCAATGGGTCC 4111 || |||||||| Sbjct 3976 GCTATGGGTCC 3986 Score = 111 bits (122), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 17487 AAGATGGCCACCCCATCGATGATGCCGCAGTGGTCTTACATGCACATCGCCGGGCAGGAC 17546 ||||||||||| || |||||| | ||||| ||||||||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 17547 GCCTCGGAGTACCTGAGCCCCGGCCTCGTG-CAGTTTGCCCGCGCCACCGACACCTACTT 17605 || || || || | | | || || | ||| || ||||| |||| ||||| || ||||| Sbjct 15371 GCTTCAGAATATTT-ATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 17606 CAGCTTGGGAAACAAGTTTAGAAACCCCACCGTGGCCCCCACGCACGATGTGACCACGGA 17665 | | | | || |||||||| || || || || || || |||||||| || ||||| Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 17666 CCGCTCGCAGAGACT 17680 | ||||||||||| Sbjct 15490 AAGATCGCAGAGACT 15504 Score = 98.7 bits (108), Expect = 2e-16 Identities = 209/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 5168 ttttttttAATCCGCTTCTTACCTCGGGTTTCCATGAGTCTGTGTCCTGCTTCGGTCACA 5227 |||| ||||| | | ||||||| ||| ||||| ||||| || |||| ||| ||||| Sbjct 5040 TTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGTCACG 5099 Query 5228 AAAAGACTGTCGGTGTCCCCGTAGACCGATTTGAGCTGTCTCTGTTCCAGAGGGGTGCCG 5287 || | |||||| || || ||||| | |||||| | ||| | ||| ||| || Sbjct 5100 AACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCGTCCC 5159 Query 5288 CGGTCCTCGTCGTACAAAAACTGAGACCACTCTGAGACGAAAGCTCTGGTCCACGCTAAT 5347 | || || || ||||| | | ||| || || |||||| | |||||| || | Sbjct 5160 CAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGGCGAGA 5219 Query 5348 ACAAATGAAGCTATCTGCGAGGGGTATCTGTCATTTTCAATGAGAGGGTCAACCTTTTGT 5407 |||||||| || || || || ||||| | || ||| || || | ||| | |||| | Sbjct 5220 ACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTATTTTCT 5279 Query 5408 AAGGTGTGGAGACAGAGGTCGTCCTCTTCCGCGTCCATAAAAGTGATTGGCTTATAGGTG 5467 | | || || || |||| || || | | || ||||||||||||||| | | Sbjct 5280 ATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAGTGATTGGCTTAAACTTA 5339 Query 5468 TAAGTCACGTGA 5479 || ||||||||| Sbjct 5340 TATGTCACGTGA 5351 Score = 89.7 bits (98), Expect = 1e-13 Identities = 413/646 (64%), Gaps = 16/646 (2%) Strand=Plus/Plus Query 5693 ATTTGGTCAGAAAAGACAATCTTTTTATTGTCAAGTTTGGTGGCAAACGACCCGTAGAGG 5752 ||||| || | ||| | || |||||||| || | |||||||||| || ||||| || Sbjct 5574 ATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGT 5633 Query 5753 GCGTTAGATAGCAATTTGGCAATGGAACG-----TAAAGTT-TGAtttttttCACGGTCG 5806 ||||| || | || ||| || ||| || | ||| || |||||||| || || Sbjct 5634 GCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTC-CG--CG 5690 Query 5807 GCCCGCTCCTTGGCCGCGATGTTAAGTTG-TACGTACTCCCGGGCCACGCAGCGCCACTC 5865 ||| || || ||||| || ||| || | |||||| || | |||||||| ||||| Sbjct 5691 GCC---TCTTTTGCCGCTATATTA-GTGGCTACGTATTCTCTTGCCACGCAATTCCACTG 5746 Query 5866 CGGGAAAACAGTAGTGCGCTCGTCGGGCACTATACGGACGCTCCAGCCCCTGTTGTGCAG 5925 | || || ||| ||||| || || || | | | |||| || | || |||| Sbjct 5747 CTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAA 5806 Query 5926 GGTAATAAGGTCCACACTGGTAGCTACCTCACCCCTGAGCGGTTCGTTGGTCCAGCACAA 5985 ||||| || | || ||| || || || | ||| || |||||||| | Sbjct 5807 AGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAG 5866 Query 5986 CCTACCGCCTTTTCGGGAGCAAAACGGGGGAAGTACGTCTAGCAAGTTGGAAGCCGGTGG 6045 | |||||||||| || ||||| || || | || |||| | | || || | Sbjct 5867 ACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGC 5926 Query 6046 GTCGGCGTCGATGGTGAAGATGCCGGGGAGGAGAGACTTGTTAAAATAATTAATTTCTAC 6105 ||| || || || | ||| | || | || | || |||||| ||||| | Sbjct 5927 GTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTC 5986 Query 6106 GCGGTGTTGCAAGGCCAAGTCCC-ACTTTTTGACGGCCAGAGCCCTCTCGTACGGATTAA 6164 | | ||||||| || | ||| | || |||| || || | ||||||| Sbjct 5987 ACCG-GTTGCAAAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATTAA 6045 Query 6165 GGGGAGGACCCCAAGGCATGGGGTGGGTAAGGGCGGAAGCGTACATGCCACAAATGTCAT 6224 | || || || | |||||||| || || | ||| || ||||| || |||| |||| Sbjct 6046 GTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCAT 6105 Query 6225 AAACATAAAGAGGCTGGCGTAAAACGCCAATGTATGTAGGATAGCAACGTCCGCCGCGAA 6284 ||||||||| ||| | ||||| || ||||| || || ||||| ||||| || | | Sbjct 6106 AAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGA 6165 Query 6285 TGCTGGCCCTGACGTAATCGTACATTTCATGGGAGGGTGCCAAAAG 6330 |||| | || || |||| || || || || || || |||| ||| Sbjct 6166 TGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109844496145098