Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_021168.1
Length=34391
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 489 3e-134
>seq4931
Length=27746
Score = 489 bits (542), Expect = 3e-134
Identities = 1033/1528 (68%), Gaps = 32/1528 (2%)
Strand=Plus/Plus
Query 18999 ATGGACAACGTCAACCCGTTTAATCACCACCGAAACGCCGGGCTCCGTTACCGCTCTATG 19058
||||||| || || || |||||||| ||| |||| | || | | ||| | ||| |
Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807
Query 19059 CTTTTGGGTAACGGACGGTACGTGCCCTTCCACATTCAAGTGCCCCAGAAATTCTTCGCC 19118
|| || || || || || || | |||| || ||||| || || || || || || ||
Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCA 16867
Query 19119 ATTAAAAACCTTTTGCTGCTACCAGGTTCGTACACGTATGAATGGAACTTCAGGAAGGAC 19178
|||||| | | |||||||| || ||||||| || |||||| || || || ||
Sbjct 16868 CTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGAT 16927
Query 19179 GTGAACATGATTTTGCAGAGCACGCTTGGTAACGACTTACGGGTGGACGGTGC--CAGCA 19236
|| ||||||||||||||||| || ||||| || || | ||| |||||| || |||
Sbjct 16928 GTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAG-- 16985
Query 19237 TACGATTTGACAGCATTAACTTATACGCCAATTTCTTTCCGATGGCGCATAACACTGCTT 19296
|| |||||||||||||| | ||| || | ||||||||||||| | |||||||||||||
Sbjct 16986 TAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTT 17045
Query 19297 CTACTCTGGAGGCCATGCTGCGCAACGATACTAACGACCAGTCGTTCAACGACTACCTGT 19356
|||||||||| | ||||| ||||| || |||||| ||||| ||| |||||| || |
Sbjct 17046 CTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTT 17105
Query 19357 GCGCTGCTAACATGCTGTACCCCATTCC-CAGCAATGCCACCAGCGTGCCTATTTCTATC 19415
| | ||||||||| || | ||||| | || || || | |||||||| |||||
Sbjct 17106 CCAGCGTTAACATGCTTTATGCTATTCCTCCGC-ATCAAACAACAGTGCCTATCTCTATT 17164
Query 19416 CCATCAAGAAACTGGGCCGCCTTTAGAGGATGGAGCTTTACCCGACTAAAAACGAAGGAA 19475
||| |||| || ||||| ||||||||||| ||| ||||| |||||||| |||||
Sbjct 17165 CCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAA 17224
Query 19476 ACGCCTTCCCTGGGCTCAGGCTTTGATCCCTACTTTGTGTACTCTGGCTCCATTCCTTAC 19535
|| || || | ||||| | ||||| || |||||| |||||| ||||| || || ||
Sbjct 17225 ACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTAT 17284
Query 19536 CTGGATGGTACATTTTACCTAAATCACACCTTCAAAAAAGTGTCTATTATGTTTGACTCG 19595
||||| || ||||| || |||||| ||| ||| ||| | || |||||| ||
Sbjct 17285 TGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCT 17344
Query 19596 TCCGTGAGCTGGCCAGGTAATGACCGCCTTCTCACCCCTAACGAGTTTGAAATTAAGCGC 19655
|| || || ||||| || |||||| | ||| | | ||||| || ||| | || || |
Sbjct 17345 TCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGA 17404
Query 19656 TCAGTGGACGGAGAAGGCTACAACGTAGCTCAAAGCAATATGACTAAGGACTGGTTTTTA 19715
||||||| |||||||| ||| |||| |||| || |||||||| |||| | |
Sbjct 17405 GAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATG 17464
Query 19716 ATTCAAATGTTAAGTCACTACAACATCGGCTACCAAGGCTTCTACGTGCCGGAGTCATAC 19775
||||||||| | ||||||||| ||||| |||||||| || || | || ||
Sbjct 17465 ATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTAT 17524
Query 19776 AAAGACAGAATGTACTCCTTCTTCAGAAACTTCCAGCCGATGAGTCGTCAAGTGGTAGAC 19835
||||| ||| |||| ||||| || ||||| || | || ||| || | ||||| || ||
Sbjct 17525 AAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGAT 17584
Query 19836 ACCGTTAACTATGCTAACTACAAAGAGGTCAAAATGCCATTCCAGCACAACAACTCTGGC 19895
| | ||| | || || || || | || ||||| || || || ||
Sbjct 17585 CCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGT 17644
Query 19896 TTCGTGGGTTACAT--GGGTCCCACCATGAGGGAGGGACAGGCGTACCCCGCCAATTATC 19953
|| | ||| || ||| | | | || || | || ||| || | |
Sbjct 17645 TT--TAAAAACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGC 17702
Query 19954 CCTATCCACTTATTGGAGAAACGGCAGTGCCTAGTGTCACCCAGAAAAAGTTTCTGTGCG 20013
| | || || || |||||| ||||| | | || |||| ||| ||| | || |
Sbjct 17703 CTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTG 17762
Query 20014 ACAGGGTGATGTGGAGAATTCCCTTTTCTAGCAACTTTATGTCTATGGGGGCTTTAACCG 20073
|||| ||||||| ||||| || || |||||||||||| ||||| | |||| |
Sbjct 17763 ACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAG 17822
Query 20074 ATCTGGGGCAGAACATGCTGTATGCCAACTCCGCTCATGCCTTGGACATGACTTTTGAGG 20133
||||||| || || |||| ||||| || || |||||||| || |||||||| | || |
Sbjct 17823 ATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAG 17882
Query 20134 TGGATCCCATGGATGAGCCCACGCTTCTTTATG-TTTTGTTTGAAGTCTTCGACGTGGTG 20192
| ||| | ||||| || || || || | ||| | | |||||||| || ||| | |||
Sbjct 17883 TAGATTCAATGGAGGAACCAACTTATC-TCATGATGCTATTTGAAGTATTTGACAT-GTG 17940
Query 20193 C-GCATCCATCAGCCGCACCGCGGCGTCATCGAGGCTGTCTACCTGCGCACGCCTTTCTC 20251
| | | |||||||| || || || ||||| || | | | || || | || || || ||
Sbjct 17941 CAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTC 18000
Query 20252 TGCCGGCAACGCCACCACCTAAGAAGCCAATGGGCTCCAGCGAACAGGAGCTGCGGAGCA 20311
|| || |||||| | || ||| ||||| || || | || | | |
Sbjct 18001 GGCAGGTAACGCCGCAACATAA-----ATATGGGGACCTCAGAGGACGAAATAAAACGAA 18055
Query 20312 TTGTGCGCGATCTGGGCTGCGGACCTTATTTTTTAGGCACTTTCGACAAACGCTTTCCGG 20371
|| | |||| || | ||||| |||||| || || | || |||||||||||||
Sbjct 18056 TTATCTCCGATTTG---AATGTACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGG 18112
Query 20372 GCTTTATGTCCCCCCAAAAGCCGG-----CCTGTGCCATTGTCAACACGGCAGGACGGGA 20426
| ||||| || ||| | | | |||||||||||| ||||| | || ||
Sbjct 18113 GGTTTAT-----CCGAAAGGACAGGTTATGCTGTGCCATTGTAAACACCGGGCTTCGCGA 18167
Query 20427 AACCGGCGGAGTGCACTGGTTAGCTTTTGCCTGGAATCCGCAAAACCGAACGTGCTACCT 20486
| ||||| || || ||| | || ||||| |||||||| | | ||| | ||| |
Sbjct 18168 AGAGGGCGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCTATATTAAAACATTTTACAT 18227
Query 20487 GTTTGACCCTTTTGGTTTTTCAGATGAA 20514
|||||| || || || || || ||| ||
Sbjct 18228 GTTTGATCCATTCGGATTCTCGGATCAA 18255
Score = 143 bits (158), Expect = 6e-30
Identities = 214/304 (70%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 18368 TCAGCAAGCGGCTCCCAATCGGCCTAACTACATTGGCTTCAGAGACAACTTTATTGGCTT 18427
||||||| || || || |||| || || || || || || || |||||||| || ||
Sbjct 16132 TCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTT 16191
Query 18428 AATGTACTACAATTCTACTGGAAACATGGGCGTTTTGGCCGGTCAGGCGTCTCAACTGAA 18487
||||| || || || | | || |||| || || |||||||| |||| || || ||
Sbjct 16192 AATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAA 16251
Query 18488 TGCTGTGGTGGATCTCCAAGACAGGAACACCGAACTGTCGTATCAGCTTATGCTTGATGC 18547
|||||| | || || |||||||| || || ||| |||| |||||||||||| | |||
Sbjct 16252 TGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAA 16311
Query 18548 CTTGGGGGATCGCAGCCGCTATTTTTCTATGTGGAACCAGGCCGTAGATAGTTATGATCC 18607
|| ||| | | || |||| ||||||| || ||||| ||| ||||||||
Sbjct 16312 TTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCC 16371
Query 18608 GGACGTAAGGATTATTGAGAACCACGGTGTAGAAGACGAGCTACCAAACTACTGCTTTCC 18667
|| || | || || || || || ||||||||||| || ||||| || ||||||||
Sbjct 16372 AGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431
Query 18668 GCTA 18671
| ||
Sbjct 16432 GTTA 16435
Score = 141 bits (156), Expect = 2e-29
Identities = 218/311 (70%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 3801 AAGATGTCTTTTAGAAGCAAGCTAATAGCTAAGGGAAGGCCTTTGGTGTAGGTGTTGACA 3860
||||| ||||||| | | | | || |||||||| |||||||| || || || || | |
Sbjct 3676 AAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATA 3735
Query 3861 AAGCGATTAAGCTGTGAGGGATGCATGCGAGGGGAGATGATGTGCATTTTAGCCTGGATC 3920
|| | || ||||| | ||| ||||| ||| | || || |||||| || ||
Sbjct 3736 AATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATT 3795
Query 3921 TTAAGGTTAGCAATATTGCCCCCCAGGTCTCTGCGAGGATTCATGTTATGCAACACCACC 3980
|| || | | ||||| || | | ||| | || || ||||| ||||| || |||||
Sbjct 3796 TTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACA 3855
Query 3981 AACACGGTGTACCCGGTGCATTTGGGGAACTTGTCATGTAGCTTTGAAGGAAAGGCGTGA 4040
|||| ||||||| |||| ||| | || ||| ||| ||||||||||| ||||||
Sbjct 3856 AACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGA 3915
Query 4041 AAGAATTTGGAAACCCCTTTGTGCCCTCCTAGGTTTTCCATGCATTCGTCCATAATAATG 4100
|| ||||| | || ||| |||||||| |||||||| || || || || ||||||
Sbjct 3916 AAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATG 3975
Query 4101 GCAATGGGTCC 4111
|| ||||||||
Sbjct 3976 GCTATGGGTCC 3986
Score = 111 bits (122), Expect = 3e-20
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 17487 AAGATGGCCACCCCATCGATGATGCCGCAGTGGTCTTACATGCACATCGCCGGGCAGGAC 17546
||||||||||| || |||||| | ||||| ||||||||| | || ||||| || || ||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 17547 GCCTCGGAGTACCTGAGCCCCGGCCTCGTG-CAGTTTGCCCGCGCCACCGACACCTACTT 17605
|| || || || | | | || || | ||| || ||||| |||| ||||| || |||||
Sbjct 15371 GCTTCAGAATATTT-ATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429
Query 17606 CAGCTTGGGAAACAAGTTTAGAAACCCCACCGTGGCCCCCACGCACGATGTGACCACGGA 17665
| | | | || |||||||| || || || || || || |||||||| || |||||
Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Query 17666 CCGCTCGCAGAGACT 17680
| |||||||||||
Sbjct 15490 AAGATCGCAGAGACT 15504
Score = 98.7 bits (108), Expect = 2e-16
Identities = 209/312 (67%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 5168 ttttttttAATCCGCTTCTTACCTCGGGTTTCCATGAGTCTGTGTCCTGCTTCGGTCACA 5227
|||| ||||| | | ||||||| ||| ||||| ||||| || |||| ||| |||||
Sbjct 5040 TTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGTCACG 5099
Query 5228 AAAAGACTGTCGGTGTCCCCGTAGACCGATTTGAGCTGTCTCTGTTCCAGAGGGGTGCCG 5287
|| | |||||| || || ||||| | |||||| | ||| | ||| ||| ||
Sbjct 5100 AACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCGTCCC 5159
Query 5288 CGGTCCTCGTCGTACAAAAACTGAGACCACTCTGAGACGAAAGCTCTGGTCCACGCTAAT 5347
| || || || ||||| | | ||| || || |||||| | |||||| || |
Sbjct 5160 CAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGGCGAGA 5219
Query 5348 ACAAATGAAGCTATCTGCGAGGGGTATCTGTCATTTTCAATGAGAGGGTCAACCTTTTGT 5407
|||||||| || || || || ||||| | || ||| || || | ||| | |||| |
Sbjct 5220 ACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTATTTTCT 5279
Query 5408 AAGGTGTGGAGACAGAGGTCGTCCTCTTCCGCGTCCATAAAAGTGATTGGCTTATAGGTG 5467
| | || || || |||| || || | | || ||||||||||||||| | |
Sbjct 5280 ATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAGTGATTGGCTTAAACTTA 5339
Query 5468 TAAGTCACGTGA 5479
|| |||||||||
Sbjct 5340 TATGTCACGTGA 5351
Score = 89.7 bits (98), Expect = 1e-13
Identities = 413/646 (64%), Gaps = 16/646 (2%)
Strand=Plus/Plus
Query 5693 ATTTGGTCAGAAAAGACAATCTTTTTATTGTCAAGTTTGGTGGCAAACGACCCGTAGAGG 5752
||||| || | ||| | || |||||||| || | |||||||||| || ||||| ||
Sbjct 5574 ATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGT 5633
Query 5753 GCGTTAGATAGCAATTTGGCAATGGAACG-----TAAAGTT-TGAtttttttCACGGTCG 5806
||||| || | || ||| || ||| || | ||| || |||||||| || ||
Sbjct 5634 GCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTC-CG--CG 5690
Query 5807 GCCCGCTCCTTGGCCGCGATGTTAAGTTG-TACGTACTCCCGGGCCACGCAGCGCCACTC 5865
||| || || ||||| || ||| || | |||||| || | |||||||| |||||
Sbjct 5691 GCC---TCTTTTGCCGCTATATTA-GTGGCTACGTATTCTCTTGCCACGCAATTCCACTG 5746
Query 5866 CGGGAAAACAGTAGTGCGCTCGTCGGGCACTATACGGACGCTCCAGCCCCTGTTGTGCAG 5925
| || || ||| ||||| || || || | | | |||| || | || ||||
Sbjct 5747 CTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAA 5806
Query 5926 GGTAATAAGGTCCACACTGGTAGCTACCTCACCCCTGAGCGGTTCGTTGGTCCAGCACAA 5985
||||| || | || ||| || || || | ||| || |||||||| |
Sbjct 5807 AGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAG 5866
Query 5986 CCTACCGCCTTTTCGGGAGCAAAACGGGGGAAGTACGTCTAGCAAGTTGGAAGCCGGTGG 6045
| |||||||||| || ||||| || || | || |||| | | || || |
Sbjct 5867 ACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGC 5926
Query 6046 GTCGGCGTCGATGGTGAAGATGCCGGGGAGGAGAGACTTGTTAAAATAATTAATTTCTAC 6105
||| || || || | ||| | || | || | || |||||| ||||| |
Sbjct 5927 GTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTC 5986
Query 6106 GCGGTGTTGCAAGGCCAAGTCCC-ACTTTTTGACGGCCAGAGCCCTCTCGTACGGATTAA 6164
| | ||||||| || | ||| | || |||| || || | |||||||
Sbjct 5987 ACCG-GTTGCAAAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATTAA 6045
Query 6165 GGGGAGGACCCCAAGGCATGGGGTGGGTAAGGGCGGAAGCGTACATGCCACAAATGTCAT 6224
| || || || | |||||||| || || | ||| || ||||| || |||| ||||
Sbjct 6046 GTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCAT 6105
Query 6225 AAACATAAAGAGGCTGGCGTAAAACGCCAATGTATGTAGGATAGCAACGTCCGCCGCGAA 6284
||||||||| ||| | ||||| || ||||| || || ||||| ||||| || | |
Sbjct 6106 AAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGA 6165
Query 6285 TGCTGGCCCTGACGTAATCGTACATTTCATGGGAGGGTGCCAAAAG 6330
|||| | || || |||| || || || || || || |||| |||
Sbjct 6166 TGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 109844496145098
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