Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_021221.1 Length=45781 Score E Sequences producing significant alignments: (Bits) Value seq4931 84.2 6e-12 >seq4931 Length=27746 Score = 84.2 bits (92), Expect = 6e-12 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 22051 AACATCGGCGCGCGGTGGTCCGTAGATCAGATGGACACGGTGAATCCGTTCAACCACCAC 22110 ||||| || | ||||||| ||||| |||||||||||| ||||| || || || ||| Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777 Query 22111 CGCAACTGGGGTCTGAAGTACCGCTCCCAATTGCTGGGCAACAGCCGGTACTGTCGGTTC 22170 | || ||| ||| |||| | || || | | || || | || || | || Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837 Query 22171 CACATTCAAGTGCCTCAGAAGTATTTCGCGATTAAGAACCTGTTGCTCCTGCCGGGCACT 22230 || ||||| || || || |||| ||| || |||| | || | || || ||||| | Sbjct 16838 CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCG 16897 Query 22231 TACACTTACGAATGGGTACTGAGGAAAGACCCCAACATGATCCTACAGTCGAGTTTGGGT 22290 |||| |||||||||| | || ||||| |||||||| | ||| | | | || Sbjct 16898 TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGC 16957 Query 22291 AACGATCTGAGAGCAGACGGCGCGTC 22316 || |||||||| | ||||| ||||| Sbjct 16958 AATGATCTGAGGGAGGACGGAGCGTC 16983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146264279310838