Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq91 100 4e-16
seq84 84.2 3e-11
>seq91
Length=4965619
Score = 100 bits (110), Expect = 4e-16
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || |||||||| | || || ||||| || ||| | | || ||| ||
Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || || || || || ||||| ||||| || | || || ||
Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||| |||| | ||| ||||||||||| |||||| ||||||||| || || |
Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACA-- 1585598
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| ||||||| ||| | || |||||| |||| || ||| | | || ||||
Sbjct 1585597 ACATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTCGGGGTGGTG 1585547
>seq84
Length=7487594
Score = 84.2 bits (92), Expect = 3e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||| | || || || ||||| | || || ||||| || | | | | || ||| ||
Sbjct 757644 ATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGAACCCTCG 757585
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || || || || || ||||| ||||| || ||||| || ||
Sbjct 757584 GATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 757525
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||| | | | ||| ||||||||||| | |||| | |||||||| |||| ||
Sbjct 757524 CAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGATGGATGTACTTTATCTGATTGCAAC 757465
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
|| || ||| ||| | || |||||| |||| || ||| | | || ||||
Sbjct 757464 AT-TCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTTGGGGTGGTG 757416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731275588358800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |