Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq91 145 2e-29
seq84 127 4e-24
seq148 116 7e-21
seq61 107 4e-18
seq147 87.8 4e-12
seq38 86.0 1e-11
>seq91
Length=4965619
Score = 145 bits (160), Expect = 2e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| | ||||||| ||| | ||| | ||| || ||| || || |||||
Sbjct 1585548 ACCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 1585607
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| ||| || |||| |||| || |||||||||||||| | ||| || ||||||||| |
Sbjct 1585608 TAAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAG 1585667
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||||| |||| ||| || | ||| ||
Sbjct 1585668 CATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAAC 1585727
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || |||||||| || || | |||||||| || ||||||||
Sbjct 1585728 CTTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq84
Length=7487594
Score = 127 bits (140), Expect = 4e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | ||||||| ||| | ||| | ||| ||| || || || ||||||
Sbjct 757417 ACCACCCCAAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGCAATCAG 757475
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
|||| || | | |||| ||| || |||||||||||| ||| ||| || |||||||| |
Sbjct 757476 ATAAAGTACATCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAG 757535
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||||| ||| || | ||| |
Sbjct 757536 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAA 757595
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| | || | |||||||| || || | ||||| || || |||| |||
Sbjct 757596 CATTGAGTATGATGGTTTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644
>seq148
Length=5416653
Score = 116 bits (128), Expect = 7e-21
Identities = 129/171 (75%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| | ||| ||| |||| || |||||||||||||| | ||| || |||||||||
Sbjct 991094 GATAAAATACGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGT 991153
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| ||||| || || || |||||||| ||||| |||||| | |||
Sbjct 991154 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCA 991213
Query 192487 ACTTCTAG-AGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || | |||||||| || || | ||||| | ||| ||||||||
Sbjct 991214 ACTTCGAGTTATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264
>seq61
Length=10587387
Score = 107 bits (118), Expect = 4e-18
Identities = 147/201 (73%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | ||| ||| ||| ||||| | ||| ||| || || || || ||||
Sbjct 1945074 ACCACCCCGAAGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGA-ATGTTGTAGTCAG 1945132
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
|||| || | | |||| |||| || |||||||||||| | | ||||| |||||||| |
Sbjct 1945133 ATAAAGTACATCCATCTTCCAGCTGCTTACCAGCAAAGGTCA--CTCTGCTGATCAGGAG 1945190
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA--TCTGACGATTC 192485
| |||||||| ||||| || || || |||| ||| | ||| | ||||| | |||
Sbjct 1945191 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTGTGTTTAGTATCTCTGAGGGTTC 1945250
Query 192486 TACTTCTAGAGTAATGGTTTT 192506
| || || |||||||||||
Sbjct 1945251 AGCCTCGAGTGTAATGGTTTT 1945271
>seq147
Length=2532799
Score = 87.8 bits (96), Expect = 4e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| ||||| | || | || | || | ||| || ||| || || |||
Sbjct 2383950 ATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2383891
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| || || || || ||||| | ||||| || |||||
Sbjct 2383890 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGA 2383831
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || |||||||| || || || || ||||| || | ||| | ||
Sbjct 2383830 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCA 2383771
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| |||||||| ||||| || ||||| || || || | || |||||||||
Sbjct 2383770 ACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATT 2383720
>seq38
Length=14582281
Score = 86.0 bits (94), Expect = 1e-11
Identities = 79/99 (80%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||| |||||||||||||||| | |||| |||| ||||||||||||||| || ||||
Sbjct 13436869 ATATTTTAATCAGATAATGTTCATCCATCTTCCAGTTGTTTACCAGCAAAAATCTATCTT 13436810
Query 192415 TGTTGATCAGGTGGTATTC-CTTCTTTATCTTGTATTTT 192452
|| |||| ||| | |||| ||| |||| ||| || ||
Sbjct 13436809 TGCTGATGAGGATGAATTCTTTTCCTTATATTGGATCTT 13436771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983657678315550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |