Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq91 145 2e-29 seq84 127 4e-24 seq148 116 7e-21 seq61 107 4e-18 seq147 87.8 4e-12 seq38 86.0 1e-11 >seq91 Length=4965619 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | ||||||| ||| | ||| | ||| || ||| || || ||||| Sbjct 1585548 ACCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 1585607 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| ||| || |||| |||| || |||||||||||||| | ||| || ||||||||| | Sbjct 1585608 TAAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAG 1585667 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| |||| ||| || | ||| || Sbjct 1585668 CATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAAC 1585727 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || |||||||| || || | |||||||| || |||||||| Sbjct 1585728 CTTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq84 Length=7487594 Score = 127 bits (140), Expect = 4e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | ||||||| ||| | ||| | ||| ||| || || || |||||| Sbjct 757417 ACCACCCCAAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGCAATCAG 757475 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| || | | |||| ||| || |||||||||||| ||| ||| || |||||||| | Sbjct 757476 ATAAAGTACATCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAG 757535 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| ||| || | ||| | Sbjct 757536 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAA 757595 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | | || | |||||||| || || | ||||| || || |||| ||| Sbjct 757596 CATTGAGTATGATGGTTTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644 >seq148 Length=5416653 Score = 116 bits (128), Expect = 7e-21 Identities = 129/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| | ||| ||| |||| || |||||||||||||| | ||| || ||||||||| Sbjct 991094 GATAAAATACGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGT 991153 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || || || |||||||| ||||| |||||| | ||| Sbjct 991154 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCA 991213 Query 192487 ACTTCTAG-AGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || | |||||||| || || | ||||| | ||| |||||||| Sbjct 991214 ACTTCGAGTTATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264 >seq61 Length=10587387 Score = 107 bits (118), Expect = 4e-18 Identities = 147/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | ||| ||| ||| ||||| | ||| ||| || || || || |||| Sbjct 1945074 ACCACCCCGAAGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGA-ATGTTGTAGTCAG 1945132 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| || | | |||| |||| || |||||||||||| | | ||||| |||||||| | Sbjct 1945133 ATAAAGTACATCCATCTTCCAGCTGCTTACCAGCAAAGGTCA--CTCTGCTGATCAGGAG 1945190 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA--TCTGACGATTC 192485 | |||||||| ||||| || || || |||| ||| | ||| | ||||| | ||| Sbjct 1945191 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTGTGTTTAGTATCTCTGAGGGTTC 1945250 Query 192486 TACTTCTAGAGTAATGGTTTT 192506 | || || ||||||||||| Sbjct 1945251 AGCCTCGAGTGTAATGGTTTT 1945271 >seq147 Length=2532799 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | || | || | ||| || ||| || || ||| Sbjct 2383950 ATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2383891 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || || ||||| | ||||| || ||||| Sbjct 2383890 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGA 2383831 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || |||||||| || || || || ||||| || | ||| | || Sbjct 2383830 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCA 2383771 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || |||||||| ||||| || ||||| || || || | || ||||||||| Sbjct 2383770 ACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATT 2383720 >seq38 Length=14582281 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| |||||||||||||||| | |||| |||| ||||||||||||||| || |||| Sbjct 13436869 ATATTTTAATCAGATAATGTTCATCCATCTTCCAGTTGTTTACCAGCAAAAATCTATCTT 13436810 Query 192415 TGTTGATCAGGTGGTATTC-CTTCTTTATCTTGTATTTT 192452 || |||| ||| | |||| ||| |||| ||| || || Sbjct 13436809 TGCTGATGAGGATGAATTCTTTTCCTTATATTGGATCTT 13436771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983657678315550