Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq91 140 6e-28 seq84 125 1e-23 seq148 102 1e-16 seq61 102 1e-16 >seq91 Length=4965619 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| ||||||| ||| | ||| | ||| || || || Sbjct 1585539 TTTCTTAGCACCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTT 1585598 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || ||||||| | || | || |||| || ||||||||||| || | ||| || || Sbjct 1585599 GTAGTCAGATAAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTG 1585658 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||||| | |||||||| ||||| || || || |||||||| |||||||| || Sbjct 1585659 ATCAGGTAGCATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGA 1585718 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || | || || |||||||| || || | ||||||||||| |||||||| Sbjct 1585719 GGGTTCAACCTTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq84 Length=7487594 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| ||||||| ||| | ||| | ||| || ||| || Sbjct 757408 TTTCTTAGCACCACCCCAAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTT 757467 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 |||| ||||||| | | | || ||| || ||||||||||| ||| ||| || || Sbjct 757468 GCAATCAGATAAAGTACATCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTG 757527 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||||||||| || Sbjct 757528 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGA 757587 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || | || | |||||||| || || | ||||| ||||| |||| ||| Sbjct 757588 GGGTTCAACATTGAGTATGATGGTTTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644 >seq148 Length=5416653 Score = 102 bits (112), Expect = 1e-16 Identities = 126/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||||| ||| | | |||| || ||||||||||| || | ||| || || |||||| Sbjct 991094 GATAAAATACGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGT 991153 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || || || |||||||| |||||||||||| | ||| Sbjct 991154 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCA 991213 Query 172020 ACTTCTAG-AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || | |||||||| || || | ||||| | || |||||||| Sbjct 991214 ACTTCGAGTTATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264 >seq61 Length=10587387 Score = 102 bits (112), Expect = 1e-16 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| ||| ||| ||| ||||| | ||| || ||| || Sbjct 1945065 TTTCTTAGCACCACCCCGAAGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGAATGTT 1945124 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || ||||||| | | | || |||| || ||||||||||| | | ||||| || Sbjct 1945125 GTAGTCAGATAAAGTACATCCATCTTCCAGCTGCTTACCAGCAAAGGTCA--CTCTGCTG 1945182 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA--TCT 172010 ||||| || |||||||| ||||| || || || |||| ||| | ||||| ||| Sbjct 1945183 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTGTGTTTAGTATCTCT 1945242 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTT 172039 || | ||| | || || ||||||||||| Sbjct 1945243 GAGGGTTCAGCCTCGAGTGTAATGGTTTT 1945271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904398393359400