Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq91 140 6e-28
seq84 125 1e-23
seq148 102 1e-16
seq61 102 1e-16
>seq91
Length=4965619
Score = 140 bits (154), Expect = 6e-28
Identities = 173/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| ||||||| ||| | ||| | ||| || || ||
Sbjct 1585539 TTTCTTAGCACCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTT 1585598
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || ||||||| | || | || |||| || ||||||||||| || | ||| || ||
Sbjct 1585599 GTAGTCAGATAAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTG 1585658
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
|||||| | |||||||| ||||| || || || |||||||| |||||||| ||
Sbjct 1585659 ATCAGGTAGCATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGA 1585718
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| ||| || | || || |||||||| || || | ||||||||||| ||||||||
Sbjct 1585719 GGGTTCAACCTTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq84
Length=7487594
Score = 125 bits (138), Expect = 1e-23
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| ||||||| ||| | ||| | ||| || ||| ||
Sbjct 757408 TTTCTTAGCACCACCCCAAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTT 757467
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|||| ||||||| | | | || ||| || ||||||||||| ||| ||| || ||
Sbjct 757468 GCAATCAGATAAAGTACATCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTG 757527
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| ||||||||| ||
Sbjct 757528 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGA 757587
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| ||| || | || | |||||||| || || | ||||| ||||| |||| |||
Sbjct 757588 GGGTTCAACATTGAGTATGATGGTTTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644
>seq148
Length=5416653
Score = 102 bits (112), Expect = 1e-16
Identities = 126/171 (74%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|||||| ||| | | |||| || ||||||||||| || | ||| || || ||||||
Sbjct 991094 GATAAAATACGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGT 991153
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| ||||| || || || |||||||| |||||||||||| | |||
Sbjct 991154 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCA 991213
Query 172020 ACTTCTAG-AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| || | |||||||| || || | ||||| | || ||||||||
Sbjct 991214 ACTTCGAGTTATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264
>seq61
Length=10587387
Score = 102 bits (112), Expect = 1e-16
Identities = 149/209 (71%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| ||| ||| ||| ||||| | ||| || ||| ||
Sbjct 1945065 TTTCTTAGCACCACCCCGAAGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGAATGTT 1945124
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || ||||||| | | | || |||| || ||||||||||| | | ||||| ||
Sbjct 1945125 GTAGTCAGATAAAGTACATCCATCTTCCAGCTGCTTACCAGCAAAGGTCA--CTCTGCTG 1945182
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA--TCT 172010
||||| || |||||||| ||||| || || || |||| ||| | ||||| |||
Sbjct 1945183 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTGTGTTTAGTATCTCT 1945242
Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTT 172039
|| | ||| | || || |||||||||||
Sbjct 1945243 GAGGGTTCAGCCTCGAGTGTAATGGTTTT 1945271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904398393359400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |