Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 4e-13 seq79 86.0 2e-11 >seq19 Length=16591509 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || ||||| |||| || ||||| ||||| Sbjct 11971597 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATGAGACCCTCACGCCCTCCCATGGCATG 11971656 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| || || | | ||||| |||| || |||||||| Sbjct 11971657 GAAGAAGAACTCGGTGGGTGTGAGGCCAGCCAAGTAGGAGTTCTCCACAAAACCACGGCT 11971716 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || || |||| | ||||| ||||| |||| || || | || |||| Sbjct 11971717 CTCAGGCCCATAATCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAATGG 11971776 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 ||| || || || || ||||| ||||| || Sbjct 11971777 GATCCGTTTGCCCTCCACGTTTTGCTGCCC 11971806 >seq79 Length=7578575 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 448894 CCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATC 448953 ||||||| || || || || || | | | ||| ||||| || ||||||||||||| Sbjct 1602150 CCGAGGACATTAAAAAAGCTTACCATAAAGTAGCACTTAAATGGCACCCTGATAAAAATC 1602209 Query 448954 CAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATTG 449013 |||| ||||||| ||| |||||| | ||||||||||| | || | || ||||| | Sbjct 1602210 CAGAAAATAAAGAAGAAGCAGAGAAAAAATTCAAAGAAGTAGCTGAGGCATATGAGGTAC 1602269 Query 449014 TAACAAATAAAGAAAAA 449030 | ||||||| |||||| Sbjct 1602270 TGTCAAATAATGAAAAA 1602286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470588212376041