Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq84 105 6e-18 seq66 105 6e-18 seq36 104 2e-17 seq74 86.0 6e-12 seq147 84.2 2e-11 >seq84 Length=7487594 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756 || || |||| |||| || || ||||| || || || ||||| || | ||| | || || Sbjct 757651 TGCTAGGATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGA 757592 Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816 | || | || || |||||| ||||| |||||||| || || |||||||| ||||| Sbjct 757591 ACCCTCGGATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCC 757532 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGA 24876 ||||| ||| | | | |||||| || || ||||||| ||| | | | || || Sbjct 757531 TGATCAGCAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGATGGATGTACTTTATCTGA 757472 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 || |||||||||||||| || || || || | || ||| || Sbjct 757471 TTGCAACATTCAAAAGGAGTCCACTCTTCATCTAGTATTGAGA 757429 >seq66 Length=5789316 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || || || || || || | || || || || Sbjct 2649437 ACAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 2649496 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| ||||| || || ||||| || ||| Sbjct 2649497 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGAT 2649556 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||| || || |||||||| ||| | | | |||| || || Sbjct 2649557 CAGCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTAC 2649616 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| ||||| | || | || || ||| Sbjct 2649617 AACATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTCTCCGAGGTGGC 2649667 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 2649668 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2649727 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 2649728 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2649787 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 2649788 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649847 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| ||||| | || ||| | ||||| Sbjct 2649848 ATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTTTGAGGGGAGG 2649894 >seq36 Length=17049061 Score = 104 bits (114), Expect = 2e-17 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || | | || || || || ||| | || ||| | Sbjct 13827344 GATGCAGATTTTCACCAAAACCCTTTCAAGGAAGACCATCACCCTCAAGGTTAAAGTCTT 13827285 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| |||||||| | ||||| ||||| | ||| | ||| Sbjct 13827284 GGATACCATAGAAAATGTAAAGGCCAAGATCCAGAAGAAAGATGGAATTCTTCCTGGTCA 13827225 Query 24823 ACAACGTTTGATCTTTGCCGGGAAA-CAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 |||| | ||||||||||||||||| |||||||| || | || | | | || || || | Sbjct 13827224 ACAAAGACTGATCTTTGCCGGGAAAGCAGCTGGAAGA-TGGAATACCTTATCTGACTACA 13827166 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA--TTGCG 24924 ||||||||||||| || || || || | ||||| || ||||| Sbjct 13827165 ACATTCAAAAGGAGTCTACTCTTTACCTACTGTTGGGACTTTGCG 13827121 >seq74 Length=6199102 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | |||| || | || || || || || || ||||| || || Sbjct 2523207 GATGCAGATTTTCAGCAAAATCCTTATAGGGAAGACCATCACACTGGAAGTTGAGCCCTT 2523148 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| |||| ||||||| | || |||||||| ||| | ||||| Sbjct 2523147 GGATACTATAGAAAATGTAATGGCCAAGATCCGGGCTAAGGAAGGAATTCCTTCTGATCA 2523088 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || | |||||| ||| || || | | || || | Sbjct 2523087 GCAAAGCCTGATCTTTGCAGGTAAGCGGCTGGAAGATG-GATGTACTTTACTGACTACAG 2523029 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 |||||||||||| || || || ||| |||||| |||| Sbjct 2523028 CATTCAAAAGGAGTCCACTCTTCACCCAGTGTTGAGATT 2522990 >seq147 Length=2532799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || ||||| || || || || ||| Sbjct 2383949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 2384008 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || ||||| || || |||||||| || Sbjct 2384009 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 2384068 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | || || || ||| Sbjct 2384069 CAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2384128 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || ||| |||| Sbjct 2384129 ATCCAGAAAGAGTCCACCCTGCACCTGGT 2384157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449530972822040