Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq84 105 6e-18
seq66 105 6e-18
seq36 104 2e-17
seq74 86.0 6e-12
seq147 84.2 2e-11
>seq84
Length=7487594
Score = 105 bits (116), Expect = 6e-18
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756
|| || |||| |||| || || ||||| || || || ||||| || | ||| | || ||
Sbjct 757651 TGCTAGGATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGA 757592
Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816
| || | || || |||||| ||||| |||||||| || || |||||||| |||||
Sbjct 757591 ACCCTCGGATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCC 757532
Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGA 24876
||||| ||| | | | |||||| || || ||||||| ||| | | | || ||
Sbjct 757531 TGATCAGCAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGATGGATGTACTTTATCTGA 757472
Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
|| |||||||||||||| || || || || | || ||| ||
Sbjct 757471 TTGCAACATTCAAAAGGAGTCCACTCTTCATCTAGTATTGAGA 757429
>seq66
Length=5789316
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||||||| | || || || || || || || || || | || || || ||
Sbjct 2649437 ACAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 2649496
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || |||||||| ||||| || || ||||| || |||
Sbjct 2649497 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGAT 2649556
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || | ||||||||||| || || |||||||| ||| | | | |||| || ||
Sbjct 2649557 CAGCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTAC 2649616
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| || ||||| || || || ||| ||||| | || | || || |||
Sbjct 2649617 AACATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTCTCCGAGGTGGC 2649667
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || || || || || |||
Sbjct 2649668 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2649727
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| ||||| || || || || ||
Sbjct 2649728 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2649787
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||| || || |||||||| ||| | | | |||| || || |||
Sbjct 2649788 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649847
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || ||| ||||| | || ||| | |||||
Sbjct 2649848 ATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTTTGAGGGGAGG 2649894
>seq36
Length=17049061
Score = 104 bits (114), Expect = 2e-17
Identities = 160/225 (71%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | ||||| || | | || || || || ||| | || ||| |
Sbjct 13827344 GATGCAGATTTTCACCAAAACCCTTTCAAGGAAGACCATCACCCTCAAGGTTAAAGTCTT 13827285
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || |||||| ||||| |||||||| | ||||| ||||| | ||| | |||
Sbjct 13827284 GGATACCATAGAAAATGTAAAGGCCAAGATCCAGAAGAAAGATGGAATTCTTCCTGGTCA 13827225
Query 24823 ACAACGTTTGATCTTTGCCGGGAAA-CAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881
|||| | ||||||||||||||||| |||||||| || | || | | | || || || |
Sbjct 13827224 ACAAAGACTGATCTTTGCCGGGAAAGCAGCTGGAAGA-TGGAATACCTTATCTGACTACA 13827166
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA--TTGCG 24924
||||||||||||| || || || || | ||||| || |||||
Sbjct 13827165 ACATTCAAAAGGAGTCTACTCTTTACCTACTGTTGGGACTTTGCG 13827121
>seq74
Length=6199102
Score = 86.0 bits (94), Expect = 6e-12
Identities = 151/219 (69%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | |||| || | || || || || || || ||||| || ||
Sbjct 2523207 GATGCAGATTTTCAGCAAAATCCTTATAGGGAAGACCATCACACTGGAAGTTGAGCCCTT 2523148
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || |||||| |||| ||||||| | || |||||||| ||| | |||||
Sbjct 2523147 GGATACTATAGAAAATGTAATGGCCAAGATCCGGGCTAAGGAAGGAATTCCTTCTGATCA 2523088
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||||||||| || || | |||||| ||| || || | | || || |
Sbjct 2523087 GCAAAGCCTGATCTTTGCAGGTAAGCGGCTGGAAGATG-GATGTACTTTACTGACTACAG 2523029
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921
|||||||||||| || || || ||| |||||| ||||
Sbjct 2523028 CATTCAAAAGGAGTCCACTCTTCACCCAGTGTTGAGATT 2522990
>seq147
Length=2532799
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || || ||||| || || || || |||
Sbjct 2383949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 2384008
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| || ||||| || || |||||||| ||
Sbjct 2384009 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 2384068
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||| || || || |||||||| ||| | | | || || || |||
Sbjct 2384069 CAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2384128
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || || || || || || ||| ||||
Sbjct 2384129 ATCCAGAAAGAGTCCACCCTGCACCTGGT 2384157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449530972822040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |