Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_022266.1 Length=31967 Score E Sequences producing significant alignments: (Bits) Value seq4931 136 8e-28 >seq4931 Length=27746 Score = 136 bits (150), Expect = 8e-28 Identities = 213/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 19098 CTCAGCAGGCTGCTCCCAACCGACCCAACTACATTGGCTTCAGGGATAATTTTATCGGTC 19157 ||||||| || || ||| | || || || || || || |||||||| |||||||| Sbjct 16131 CTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGT 16190 Query 19158 TCATGTATTACAACTCCACTGGCAATATGGGTGTTTTGGCAGGGCAAGCTTCTCAGCTAA 19217 | |||| ||| ||| | | ||||| ||||||| || || || ||| | || ||||| | Sbjct 16191 TAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTA 16250 Query 19218 ACGCGGTGGTTGACTTGCAAGACAGAAACACCGAGCTGTCCTACCAGCTCATGCTTGATG 19277 | || || | ||| | ||||||||||| || || |||| || ||||| ||| | ||| Sbjct 16251 ATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATA 16310 Query 19278 CTTTGGGCGACCGCAGTCGTTACTTCTCCATGTGGAACCAGGCCGTAGACAGCTATGACC 19337 ||| ||| | | ||| || | | | ||||||| || ||||| || ||||| | Sbjct 16311 ATTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATC 16370 Query 19338 CTGATGTCAGAATTATTGAAAATCATGGTGTGGAGGATGAGCTGCCAAACTACTGTTTCC 19397 | || ||| |||| || || ||| ||| || || || || || ||||| || || || | Sbjct 16371 CAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTC 16430 Query 19398 CGCTA 19402 || || Sbjct 16431 CGTTA 16435 Score = 123 bits (136), Expect = 5e-24 Identities = 810/1300 (62%), Gaps = 34/1300 (3%) Strand=Plus/Plus Query 19736 ATGGACAACGTCAACCCCTTCAACCACCACCGCAACGCGGGACTGCGCTACCGCTCCATG 19795 ||||||| || || || || || || ||| | || | || || | ||| | || | Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807 Query 19796 CTGCTGGGCAACGGCCGCTACGTACCCTTCCACATCCAAGTGCCCCAGAAATTCTTCGCC 19855 || | || || || ||||| | |||| || || || || || || || || || || Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCA 16867 Query 19856 ATCAAAAACCTCCTGCTCCTCCCCGGGTCCTACACCTACGAGTGGAACTTCCGCAAGGAC 19915 | |||| | || || || || || || |||| ||||| ||| || | || || Sbjct 16868 CTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGAT 16927 Query 19916 GTCAACATGATCCTCCAGAGCAGCCTGGGTAACGACCTCCGCGTCGACGGGGCCAGCGTC 19975 || |||||||| | ||||| | || || || || || | | ||||| |||||| Sbjct 16928 GTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGG----AGCGTC 16983 Query 19976 AGG----TTCGACAGCATCAACCTGTACGCCAACTTCTTCCCCATGGCCCACAACACCGC 20031 || || |||||||| | ||| | || | ||||| || ||| | || ||||| || Sbjct 16984 AGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGC 17043 Query 20032 CTCCACGCTCGAGGCCATGCTGCGCAACGACACCAACGACCAGTCGTTCAACGACTACCT 20091 || || || || | ||||| ||||| || ||||| ||||| ||| |||||| || Sbjct 17044 TTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCT 17103 Query 20092 CTGCGCTGCCAACATGCTCTACCCCATCCC--CGC--CAACGCCACCAGCGTGCCCATCT 20147 | | | |||||||| || | || || ||| ||| || ||| |||| |||| Sbjct 17104 TTCCAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAAA--CAACAG--TGCCTATCT 17159 Query 20148 CCATTCCCTCGCGGAACTGGGCCGCCTTCCGGGGCTGGAGCTTCACCCGGCTCAAGACCA 20207 | ||||| | |||| ||||| ||||| | || ||| || || | || || || | Sbjct 17160 CTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAA-ACAA 17218 Query 20208 -AGGAGACCCCCTCTCTGGGCTCCGGCTTCGATCCCTACTTCACCTACTCGGGCTCCNNN 20266 |||| || || | | ||||| | || || || ||||| | ||||||||||| Sbjct 17219 CAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATC 17278 Query 20267 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAAGGTCTCCATCATGTTC 20326 | ||||| |||| ||| Sbjct 17279 CCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTT 17338 Query 20327 GACTCCTCCGTCAGCTGGCCCGGCAACGACCGCCTGCTGACCCCCAACGAGTTCGAGATC 20386 || || || || || ||||| || || ||| | || | | || || || || | || Sbjct 17339 GATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATA 17398 Query 20387 AAGCGCACCGTGGACGGGGAAGGGTACAACGTGGCCCAGTGCAACATGACCAAGGACTGG 20446 || | ||||||| |||||| || ||| | ||| ||| || || ||||| ||| Sbjct 17399 AAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGG 17458 Query 20447 TTCCTCATCCAGATGCTCAGCCACTACAACATCGGCTACCAGGGCTTCTACGTGCCCGAG 20506 | | || || |||||| |||||||| ||||| ||||| || || || | ||| Sbjct 17459 TATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACA 17518 Query 20507 GGCTACAAGGACAGGATGTACTCTTTCTTCCGCAACTTCCAACCCATGAGCCGCCAGGTG 20566 | || || || || |||| || || || | || || |||||||| | | || || Sbjct 17519 GATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTT 17578 Query 20567 GTCGACAC---CACCACCTACACCGACTACAAAAACGTCACCCTCCCCTTCCAGCACAAC 20623 || || | | || | | | || || ||| | || | ||||| || Sbjct 17579 GTGGATCCTGGTAAGACGGAAA---AATATCAACCCGTTGCTCTTAAATATCAGCATAAT 17635 Query 20624 AACTCGGGGTTCGTGGGATACAT--GGGCCCCACCATGCGCGAGGGGCAGGCCTACCCCG 20681 || || || || | | ||| || ||| ||| | || || | || ||| Sbjct 17636 AATTCAGGTTT--TAAAAACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCT 17693 Query 20682 CCAACTACCCCTACCCCCTGATCGGCAAGACCGCCGTGCCCAGCC-TCACGCAGAAAAAG 20740 |||| || | ||| || ||||| | || | | | | || | || |||| ||| Sbjct 17694 GTAACTGGCCTTTCCCGCTCATCGG-AGAACAGGCAGGTAAAACCATTACTCAGAGAAAA 17752 Query 20741 TTCCTCTGCGACCGCACCATGTGGCGCATCCCCTTCTCCAGTAACTTCATGTCCATGGGG 20800 || | || ||| | || ||||| | || || |||||| ||||| ||||||||||| Sbjct 17753 TTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGA 17812 Query 20801 GCGCTCACCGACCTGGGGCAGAACATGCTGTACGCCAACTCCGCCCACGCCCTCGACATG 20860 | || || || ||||| || || |||| || || || || || || || | |||||| Sbjct 17813 ACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATG 17872 Query 20861 ACCTTCGAGGTGGACCCCATGGATGAGCCCACGCTTCTCTATG-TTCTGTTCGAAGTGTT 20919 || |||| || || | ||||| || || || |||| ||| | || || ||||| || Sbjct 17873 ACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTC-ATGATGCTATTTGAAGTATT 17931 Query 20920 CGACGTCGTGC-GCATCCACCAGCCGCACCGCGGCGTCATCGAGGCCGTCTACCTGCGCA 20978 ||| | |||| | | || ||||| || || || ||||| || | | || || | | Sbjct 17932 TGACAT-GTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAA 17990 Query 20979 CGCCGTTCTCGGCCGGTAACGCCACCACCTAAGGAGGGGG 21018 | || || ||||| ||||||||| | || ||| | |||| Sbjct 17991 CCCCCTTTTCGGCAGGTAACGCCGCAACATAAATATGGGG 18030 Score = 102 bits (112), Expect = 2e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 18254 AAGATGGCCACCCCCTCGATGATGCCGCAGTGGTCTTACATGCACATCGCCGGGCAGGAC 18313 ||||||||||| ||||||||| | ||||| ||||||||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18314 GCCTCGGAGTACCTGAGCCCGGGCCTGGTG-CAGTTCGCCCGCGCCACCGACACGTACTT 18372 || || || || | | | | || | ||| || || || |||| ||||| |||||||| Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 18373 CAGCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCCCCCACCCACGACGTGACGACGGA 18432 ||| || | || ||||| || || ||||| || || || ||||| || || ||||| Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102093701202714