Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_022612.1 Length=42940 Score E Sequences producing significant alignments: (Bits) Value seq4931 127 6e-25 >seq4931 Length=27746 Score = 127 bits (140), Expect = 6e-25 Identities = 190/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 21032 AACATTGGCGCCAGATGGTCTATTGATCAAATGGATACCGTTAACCCGTTCAATCACCAC 21091 ||||| || |||| ||||| || ||| ||||| || ||||| || || ||||| ||| Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777 Query 21092 CGCAATTGGGGTCTTAAGTACCGTTCGCAGCTGTTGGGCAACAGCCGATAT--TGCCGGT 21149 | ||| ||| | | |||| | || ||||| || || || | || ||| | || | Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCC--T 16835 Query 21150 TTCATATTCAGGTTCCGCAGAAATACTTTGCTATTAAAAATCTGCTCCTTCTACCTGGAA 21209 ||||||||||||||||||| || | ||||| |||||| | |||| || ||||| ||| Sbjct 16836 TTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGAT 16895 Query 21210 CGTATACATACGAATGGGTCCTGCGCAAAGATCCCAACATGATCCTACAGTCAAGTCTCG 21269 |||| | ||||||||| | | |||||| |||||||| | ||| | ||| | Sbjct 16896 CGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTG 16955 Query 21270 GGAATGATTTGAGAGCCGACGGGGCTTC 21297 | |||||| |||| | ||||| || || Sbjct 16956 GCAATGATCTGAGGGAGGACGGAGCGTC 16983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137180117416732