Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_022612.1
Length=42940
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 127 6e-25
>seq4931
Length=27746
Score = 127 bits (140), Expect = 6e-25
Identities = 190/268 (71%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 21032 AACATTGGCGCCAGATGGTCTATTGATCAAATGGATACCGTTAACCCGTTCAATCACCAC 21091
||||| || |||| ||||| || ||| ||||| || ||||| || || ||||| |||
Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777
Query 21092 CGCAATTGGGGTCTTAAGTACCGTTCGCAGCTGTTGGGCAACAGCCGATAT--TGCCGGT 21149
| ||| ||| | | |||| | || ||||| || || || | || ||| | || |
Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCC--T 16835
Query 21150 TTCATATTCAGGTTCCGCAGAAATACTTTGCTATTAAAAATCTGCTCCTTCTACCTGGAA 21209
||||||||||||||||||| || | ||||| |||||| | |||| || ||||| |||
Sbjct 16836 TTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGAT 16895
Query 21210 CGTATACATACGAATGGGTCCTGCGCAAAGATCCCAACATGATCCTACAGTCAAGTCTCG 21269
|||| | ||||||||| | | |||||| |||||||| | ||| | ||| |
Sbjct 16896 CGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTG 16955
Query 21270 GGAATGATTTGAGAGCCGACGGGGCTTC 21297
| |||||| |||| | ||||| || ||
Sbjct 16956 GCAATGATCTGAGGGAGGACGGAGCGTC 16983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137180117416732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |