Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_022613.1
Length=43686
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 109 2e-19
>seq4931
Length=27746
Score = 109 bits (120), Expect = 2e-19
Identities = 182/260 (70%), Gaps = 5/260 (2%)
Strand=Plus/Plus
Query 20442 CCAGATGGTCCATCGACCAGATGGACAACGTCAACCCGTTTAACCACCACCGAAATTGGG 20501
|||| ||||| || || |||||||| || || || ||||| || ||| ||||| |
Sbjct 16728 CCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTG 16787
Query 20502 GTCTCAAATACAGATCTCAGCTCCTCGGAAACAGCCGATA--CTGCCGGTTCCACATTCA 20559
|| | | ||||| |||||||| | ||||| | || || || || || || |||||
Sbjct 16788 GTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCC--TTTCATATTCA 16845
Query 20560 GGTTCCGCAGAAATATTTTGCCATTAAAAACCTGCTGCTGCTGCCGGGGACCTATACCTA 20619
||||||||| || | |||||| |||||| |||| ||||| ||||| | || | ||
Sbjct 16846 GGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTA 16905
Query 20620 CGAATGGGTCTTGCGCAAAGATCCGAATATGATCCTTCAATCTAGCCTGGGGAACGATCT 20679
||||||| || | |||||| || ||||| | || || || || || |||||
Sbjct 16906 CGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCT 16965
Query 20680 CAGGGCGGATGGCGC-TCAG 20698
|||| ||| || || ||||
Sbjct 16966 GAGGGAGGACGGAGCGTCAG 16985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139565469325568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |