Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_022613.1 Length=43686 Score E Sequences producing significant alignments: (Bits) Value seq4931 109 2e-19 >seq4931 Length=27746 Score = 109 bits (120), Expect = 2e-19 Identities = 182/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 20442 CCAGATGGTCCATCGACCAGATGGACAACGTCAACCCGTTTAACCACCACCGAAATTGGG 20501 |||| ||||| || || |||||||| || || || ||||| || ||| ||||| | Sbjct 16728 CCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTG 16787 Query 20502 GTCTCAAATACAGATCTCAGCTCCTCGGAAACAGCCGATA--CTGCCGGTTCCACATTCA 20559 || | | ||||| |||||||| | ||||| | || || || || || || ||||| Sbjct 16788 GTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCC--TTTCATATTCA 16845 Query 20560 GGTTCCGCAGAAATATTTTGCCATTAAAAACCTGCTGCTGCTGCCGGGGACCTATACCTA 20619 ||||||||| || | |||||| |||||| |||| ||||| ||||| | || | || Sbjct 16846 GGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTA 16905 Query 20620 CGAATGGGTCTTGCGCAAAGATCCGAATATGATCCTTCAATCTAGCCTGGGGAACGATCT 20679 ||||||| || | |||||| || ||||| | || || || || || ||||| Sbjct 16906 CGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCT 16965 Query 20680 CAGGGCGGATGGCGC-TCAG 20698 |||| ||| || || |||| Sbjct 16966 GAGGGAGGACGGAGCGTCAG 16985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139565469325568