Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq66 140 2e-28 seq147 123 2e-23 seq36 89.7 3e-13 >seq66 Length=5789316 Score = 140 bits (154), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | || |||||||| | ||| ||||||||| ||||| ||||| || Sbjct 2649894 CCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649835 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 2649834 AGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2649775 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 2649774 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 2649717 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 2649716 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 2649667 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| Sbjct 2649651 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649592 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||||| | ||||| || | || | ||||||||||| Sbjct 2649591 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCC 2649532 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| ||| ||| || || | ||| |||| Sbjct 2649531 TGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGG 2649474 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| |||||||||||||| Sbjct 2649473 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2649440 >seq147 Length=2532799 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||||||| | |||| ||||||||| ||||| ||||| || Sbjct 2383947 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 2383888 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || ||||||||||| | |||||||| | || Sbjct 2383887 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2383828 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| || || | || || || || || || || | ||| ||| ||| | Sbjct 2383827 ATGCCCTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCAA 2383770 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || |||||||| || || | |||||| || ||||||||||| Sbjct 2383769 CCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2383721 Score = 120 bits (132), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| ||||| ||||| ||||| || || |||| |||| Sbjct 2384160 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2384101 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| | |||||||| | || | ||||| || || Sbjct 2384100 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCC 2384041 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | ||| ||| ||| || || | ||| |||| Sbjct 2384040 TGGATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGG 2383983 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || ||||||||||| Sbjct 2383982 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 >seq36 Length=17049061 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| ||| ||| ||| ||||| ||||| ||||| || || || | |||| Sbjct 7362824 AGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCT 7362883 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || ||||||||||| | |||||||| | || | ||||| || || Sbjct 7362884 TCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCC 7362943 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | || | ||| ||| ||| || || | | | |||||| Sbjct 7362944 TGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTC 7363003 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| | ||||||||||| Sbjct 7363004 TTGCCGGTCAGGGTCTTCATGAAGATCTGCAT 7363035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325434024144467