Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq66 113 3e-20 seq148 91.5 1e-13 seq91 89.7 4e-13 >seq66 Length=5789316 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||| ||||||| || || ||||| || || || ||||| || || | Sbjct 2649894 CCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649835 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || ||||| ||| | |||| || ||||| || || ||| Sbjct 2649834 AGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2649775 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || |||||| | || | |||||| | || || Sbjct 2649774 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649715 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || || || |||||||| Sbjct 2649714 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668 >seq148 Length=5416653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/155 (74%), Gaps = 5/155 (3%) Strand=Plus/Plus Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || |||||| | |||| |||||||||||| || ||||| || || || || Sbjct 991112 TCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCTTCCTTATCC 991171 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT---ATA 29751 || | || || ||| |||||| ||| || || |||| ||||| ||||| || Sbjct 991172 TGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCAACTTC--GAGTTATGATG 991229 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | |||||| ||||| |||||||| Sbjct 991230 GTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264 >seq91 Length=4965619 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||| ||||| || || | | || | ||| || || || Sbjct 1585572 ATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGTCCATCTTCCAGCTG 1585631 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | |||| |||||||||||| || | || || || || || || | || Sbjct 1585632 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCCTTATCCTGGATCTT 1585691 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||| | ||| || || |||| || | || || || ||||| || || Sbjct 1585692 GGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTGATGGTTTTCCCCGT 1585751 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || |||||||| Sbjct 1585752 AAGGGTTTTAATGAAAATCTGCAT 1585775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384913128057213