Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq66 113 3e-20
seq148 91.5 1e-13
seq91 89.7 4e-13
>seq66
Length=5789316
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||||||||| ||||||| || || ||||| || || || ||||| || || |
Sbjct 2649894 CCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649835
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || ||| || || || ||||| ||| | |||| || ||||| || || |||
Sbjct 2649834 AGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2649775
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || |||||| | || | |||||| | || ||
Sbjct 2649774 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649715
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || |||||||| | ||| || || || ||||||||
Sbjct 2649714 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
>seq148
Length=5416653
Score = 91.5 bits (100), Expect = 1e-13
Identities = 114/155 (74%), Gaps = 5/155 (3%)
Strand=Plus/Plus
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| || || || |||||| | |||| |||||||||||| || ||||| || || || ||
Sbjct 991112 TCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCTTCCTTATCC 991171
Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT---ATA 29751
|| | || || ||| |||||| ||| || || |||| ||||| ||||| ||
Sbjct 991172 TGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCAACTTC--GAGTTATGATG 991229
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || | |||||| ||||| ||||||||
Sbjct 991230 GTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264
>seq91
Length=4965619
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| ||||| || ||||| ||||| || || | | || | ||| || || ||
Sbjct 1585572 ATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGTCCATCTTCCAGCTG 1585631
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
|| |||||| | |||| |||||||||||| || | || || || || || || | ||
Sbjct 1585632 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCCTTATCCTGGATCTT 1585691
Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| ||| |||| | ||| || || |||| || | || || || ||||| || ||
Sbjct 1585692 GGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTGATGGTTTTCCCCGT 1585751
Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786
| |||||||| || ||||||||
Sbjct 1585752 AAGGGTTTTAATGAAAATCTGCAT 1585775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384913128057213
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |