Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq202 228 6e-54 seq10 131 1e-24 seq4 89.7 4e-12 seq55 86.0 5e-11 >seq202 Length=1299801 Score = 228 bits (252), Expect = 6e-54 Identities = 921/1433 (64%), Gaps = 22/1433 (2%) Strand=Plus/Minus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || ||||| ||||||||||||||||| | ||||| || || || || ||||| || Sbjct 1284024 GGCTGTGACATTGAGAATACCATTGGCATCGATGTCAAACGTCACCTCGATCTGAGGAAC 1283965 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || || | ||||| || || || || | ||| ||||| || || || | Sbjct 1283964 TCCCCTGGGTGCAGGAGGTATTCCAGTCAGGTCAAAGCGTCCCAACAGGTTGTTGTCCCT 1283905 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | || || ||||| | | ||||| || ||| || || ||||| || Sbjct 1283904 TGTCATCGCTCTCTCGCCCTCATATACCTGGATCAATACCCCAGGCTGGTTGTCTGAGTA 1283845 Query 281605 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 || || || | |||| | | |||| || || || | ||| | | || | | | Sbjct 1283844 TGTGGTGAAGA-TCTGAGTCTGTTTAGTGGGGATGGTGGAGTTGCGCTTGATCAAGATAG 1283786 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | ||| |||||||| || || || || || || |||| || || | | | | Sbjct 1283785 TCATCACACCCCCAGCTGTCTCCAATCCCAGGGAGAGGGGAGCTACGTCCAGCAAAAGCA 1283726 Query 281724 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || || | || ||| | | ||| | | ||||||||| || | ||||| |||| Sbjct 1283725 GATCCTGCACCTTCTCAGACTTGTCACCCATCAAAATAGCTGCCTGGACTGCAGCTCCAT 1283666 Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 281843 | || || |||||||| || || | | | | || || | ||||| ||| | | Sbjct 1283665 AGGCTACTGCTTCATCCGGGTTGATACTCTTGTTGAGATCACGGCCATTAAAATACTCCT 1283606 Query 281844 AAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 ||| ||| ||| |||||| || || || | || || || ||||| ||||| || || Sbjct 1283605 GAAGTAGTC-TCTGTACCTTCGGGATGCGGGTGGAGCCCCCTACTAAAACAATATCGTGG 1283547 Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962 | | || ||||||| || | |||| | | |||||| || || || || | | Sbjct 1283546 ATTTTAGACTTATCCATCTTGGCATCCCGAAGAGATTTTTCCACAGGCTCCAGGGTACCC 1283487 Query 281963 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-T 282020 |||||||| |||| ||| | ||||| || ||| ||||| || || | || || | Sbjct 1283486 CTAAACAAATCTGCACACAACTCTTCAAAACGAGCCCTAGT--GATGGATGTGTAGAAGT 1283429 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 |||| ||||| | | || |||| ||| | | | || || || || || | | Sbjct 1283428 CAATGCCTTCATAAAGTGAGTCAATTTCCAGGTTGGCCTGGGTGCTGGATGACAGAGTCC 1283369 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTC 282136 || || | ||||| || || | || | | | || |||| | ||| |||| Sbjct 1283368 TCTTGGCCCTCTCACAGGCAGTGCGCAGCCGCCTCACAGCCCGCTTGTTCTGGCTGATG- 1283310 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 || | |||| || ||||| || || || ||| | | ||||| | |||||| Sbjct 1283309 ---TCCTTCTTATGCTTCCTCTTAAATTCCTCCACAAAGTGGCTCACAAGTCTGTTATCA 1283253 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 || || || || ||||| | || | || | ||||| |||| | |||| ||||| Sbjct 1283252 AAGTCCTCCCCACCCAAGTGGGTGTCCCCAGCTGTAGCCTTTACCTCAAAAATCCCATCG 1283193 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-T 282315 || | || || | | |||||| ||| || ||||||| |||||| || || |||| | Sbjct 1283192 TCTATAGTCAGGATGGATACATCAAAGGTGCCTCCACCCAGATCAAAGATGAGGACATGT 1283133 Query 282316 CATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 | | | |||| ||| ||| | |||||| |||| ||||| ||||| ||||||| Sbjct 1283132 CGCTCCCCCTGTCCACCTTT--ATCTAAACCATAGGCAATGGCAGCTGCAGTGGGTTCAT 1283075 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 | || ||||| | ||||| || || || || |||||||| || ||||| || | || Sbjct 1283074 TGATGATTCTTAGCACATTGAGGCCTGCGATCACACCTGCATCCTTGGTGGCCTGGCGTT 1283015 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATAT 282494 | || || || ||||| || || || || || ||||||| || || | || | | Sbjct 1283014 GAGAGTCATTGAAATAGGCTGGCACGGTGATCACGGCATTGGTGACAGTGTGGCCCAAAA 1282955 Query 282495 AAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAAT 282554 |||| ||| || | |||||| || | | | |||||| || || | || || | | Sbjct 1282954 AAGCCTCTGCAGTCTCTTTCATCTTGGTCAGTACCATTGAAGAGATCTCCTCAGG-GTAG 1282896 Query 282555 ATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613 | |||| | || || ||| || || | | || || || |||| || Sbjct 1282895 AAAGCTTTCTTCTCCCCTTTATAAGACACCATCACTTTGGGCTTCCCTCCTTCATTGATC 1282836 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 |||| |||||||||| |||||||||||| || ||| | || ||||| | ||| ||| Sbjct 1282835 ACTTGAAATGGCCAAAGTTTCATATCTGACTGTACAACAGGATCGTTAAATTTTCTGCCA 1282776 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | ||||| |||||||| | |||||| || || | || | || | || || Sbjct 1282775 ATCAGACGTTTGGCATCAAAGACAGTATTCTGCGGGTTCATGGCTACCTGGTTCTTAGCC 1282716 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 ||||||||||| || | || || || || || | || || || || ||||| || Sbjct 1282715 GCATCTCCAATGAGCCGCTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTG 1282656 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || || || || || || || || || || |||| || | || || ||||| Sbjct 1282655 CCCTGGTCGTTGGCGATGATCTCCACCTTGCCATGCTGGAACACCCCCACACA 1282603 >seq10 Length=26250347 Score = 131 bits (144), Expect = 1e-24 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||||||||||||||| ||||| |||||||||| |||||| ||||||||| Sbjct 23030616 CCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCTCAGAACATTCAGACCAGCA 23030675 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || |||| |||||||| || || || | || || ||||| || ||||| || |||||| Sbjct 23030676 ATGGTTCCAGCATCTTTTGTTGCCTGGCGCTGAGAGTCGTTGAAGTATGCTGGGACAGTA 23030735 Query 282464 ATAACGGCATCTGTTAC 282480 | || |||| ||| || Sbjct 23030736 ACCACAGCATTTGTAAC 23030752 >seq4 Length=37912305 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| |||| |||||||| | || || | || ||||||| Sbjct 26121588 TAGCTACTATAGCTTTTGGACTGGGCATTAATAAGGCTGACATTCGCAGAGTCATTCATT 26121647 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| |||||||| ||||||||||||||||| || |||| Sbjct 26121648 ATGGTGCTCCTAAGGAAATGGAATCCTATTATCAGGAAATTGGTAGAGCAGGCCGCGATG 26121707 Query 131301 GA 131302 || Sbjct 26121708 GA 26121709 >seq55 Length=8345910 Score = 86.0 bits (94), Expect = 5e-11 Identities = 208/309 (67%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322 |||| || ||||| ||| ||||| || ||| || ||| || ||| | || |||| Sbjct 2138648 TTTCCAACTCATTCCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCAGCAAA 2138705 Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379 || | ||| || ||| ||| || ||||| | |||||| | | |||||| Sbjct 2138706 TTTCTCAGCATCATTAACCATCCTTTCAATCT---CTTCAGG---TGTCAGGCGATTCTG 2138759 Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433 ||| ||||| || || || || |||||| ||| || || | || ||||| Sbjct 2138760 GTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCCTTGTCTTCAGCTGTCAC 2138816 Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493 |||||||||||| |||| | ||||| ||||||||||| || || ||||| | | Sbjct 2138817 CCGAAGAATACCATTCACATCTATTTCAAAGGTGACTTCAATCTGGGGTACCCCGCGGGG 2138876 Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553 |||||| || || || || || |||||| |||||| | ||| ||||| || || Sbjct 2138877 AGCAGGAGGAATTCCAGTCAGATCAAATGTACCCAGAAGGTGATTGTCTTTTGTCAAAGG 2138936 Query 281554 TCGTTCACC 281562 ||||||||| Sbjct 2138937 TCGTTCACC 2138945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737429699205618