Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq202 228 6e-54
seq10 131 1e-24
seq4 89.7 4e-12
seq55 86.0 5e-11
>seq202
Length=1299801
Score = 228 bits (252), Expect = 6e-54
Identities = 921/1433 (64%), Gaps = 22/1433 (2%)
Strand=Plus/Minus
Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484
||| || ||||| ||||||||||||||||| | ||||| || || || || ||||| ||
Sbjct 1284024 GGCTGTGACATTGAGAATACCATTGGCATCGATGTCAAACGTCACCTCGATCTGAGGAAC 1283965
Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544
|| || | ||||| || || || || | ||| ||||| || || || |
Sbjct 1283964 TCCCCTGGGTGCAGGAGGTATTCCAGTCAGGTCAAAGCGTCCCAACAGGTTGTTGTCCCT 1283905
Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604
|| | || || ||||| | | ||||| || ||| || || ||||| ||
Sbjct 1283904 TGTCATCGCTCTCTCGCCCTCATATACCTGGATCAATACCCCAGGCTGGTTGTCTGAGTA 1283845
Query 281605 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663
|| || || | |||| | | |||| || || || | ||| | | || | | |
Sbjct 1283844 TGTGGTGAAGA-TCTGAGTCTGTTTAGTGGGGATGGTGGAGTTGCGCTTGATCAAGATAG 1283786
Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723
|||| | ||| |||||||| || || || || || || |||| || || | | | |
Sbjct 1283785 TCATCACACCCCCAGCTGTCTCCAATCCCAGGGAGAGGGGAGCTACGTCCAGCAAAAGCA 1283726
Query 281724 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783
|| || | || ||| | | ||| | | ||||||||| || | ||||| ||||
Sbjct 1283725 GATCCTGCACCTTCTCAGACTTGTCACCCATCAAAATAGCTGCCTGGACTGCAGCTCCAT 1283666
Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 281843
| || || |||||||| || || | | | | || || | ||||| ||| | |
Sbjct 1283665 AGGCTACTGCTTCATCCGGGTTGATACTCTTGTTGAGATCACGGCCATTAAAATACTCCT 1283606
Query 281844 AAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902
||| ||| ||| |||||| || || || | || || || ||||| ||||| || ||
Sbjct 1283605 GAAGTAGTC-TCTGTACCTTCGGGATGCGGGTGGAGCCCCCTACTAAAACAATATCGTGG 1283547
Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962
| | || ||||||| || | |||| | | |||||| || || || || | |
Sbjct 1283546 ATTTTAGACTTATCCATCTTGGCATCCCGAAGAGATTTTTCCACAGGCTCCAGGGTACCC 1283487
Query 281963 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-T 282020
|||||||| |||| ||| | ||||| || ||| ||||| || || | || || |
Sbjct 1283486 CTAAACAAATCTGCACACAACTCTTCAAAACGAGCCCTAGT--GATGGATGTGTAGAAGT 1283429
Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080
|||| ||||| | | || |||| ||| | | | || || || || || | |
Sbjct 1283428 CAATGCCTTCATAAAGTGAGTCAATTTCCAGGTTGGCCTGGGTGCTGGATGACAGAGTCC 1283369
Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTC 282136
|| || | ||||| || || | || | | | || |||| | ||| ||||
Sbjct 1283368 TCTTGGCCCTCTCACAGGCAGTGCGCAGCCGCCTCACAGCCCGCTTGTTCTGGCTGATG- 1283310
Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196
|| | |||| || ||||| || || || ||| | | ||||| | ||||||
Sbjct 1283309 ---TCCTTCTTATGCTTCCTCTTAAATTCCTCCACAAAGTGGCTCACAAGTCTGTTATCA 1283253
Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256
|| || || || ||||| | || | || | ||||| |||| | |||| |||||
Sbjct 1283252 AAGTCCTCCCCACCCAAGTGGGTGTCCCCAGCTGTAGCCTTTACCTCAAAAATCCCATCG 1283193
Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-T 282315
|| | || || | | |||||| ||| || ||||||| |||||| || || |||| |
Sbjct 1283192 TCTATAGTCAGGATGGATACATCAAAGGTGCCTCCACCCAGATCAAAGATGAGGACATGT 1283133
Query 282316 CATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374
| | | |||| ||| ||| | |||||| |||| ||||| ||||| |||||||
Sbjct 1283132 CGCTCCCCCTGTCCACCTTT--ATCTAAACCATAGGCAATGGCAGCTGCAGTGGGTTCAT 1283075
Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434
| || ||||| | ||||| || || || || |||||||| || ||||| || | ||
Sbjct 1283074 TGATGATTCTTAGCACATTGAGGCCTGCGATCACACCTGCATCCTTGGTGGCCTGGCGTT 1283015
Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATAT 282494
| || || || ||||| || || || || || ||||||| || || | || | |
Sbjct 1283014 GAGAGTCATTGAAATAGGCTGGCACGGTGATCACGGCATTGGTGACAGTGTGGCCCAAAA 1282955
Query 282495 AAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAAT 282554
|||| ||| || | |||||| || | | | |||||| || || | || || | |
Sbjct 1282954 AAGCCTCTGCAGTCTCTTTCATCTTGGTCAGTACCATTGAAGAGATCTCCTCAGG-GTAG 1282896
Query 282555 ATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613
| |||| | || || ||| || || | | || || || |||| ||
Sbjct 1282895 AAAGCTTTCTTCTCCCCTTTATAAGACACCATCACTTTGGGCTTCCCTCCTTCATTGATC 1282836
Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673
|||| |||||||||| |||||||||||| || ||| | || ||||| | ||| |||
Sbjct 1282835 ACTTGAAATGGCCAAAGTTTCATATCTGACTGTACAACAGGATCGTTAAATTTTCTGCCA 1282776
Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733
|| | ||||| |||||||| | |||||| || || | || | || | || ||
Sbjct 1282775 ATCAGACGTTTGGCATCAAAGACAGTATTCTGCGGGTTCATGGCTACCTGGTTCTTAGCC 1282716
Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793
||||||||||| || | || || || || || | || || || || ||||| ||
Sbjct 1282715 GCATCTCCAATGAGCCGCTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTG 1282656
Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846
|| || || || || || || || || || |||| || | || || |||||
Sbjct 1282655 CCCTGGTCGTTGGCGATGATCTCCACCTTGCCATGCTGGAACACCCCCACACA 1282603
>seq10
Length=26250347
Score = 131 bits (144), Expect = 1e-24
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
||||| |||| ||||||||||||||| ||||| |||||||||| |||||| |||||||||
Sbjct 23030616 CCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCTCAGAACATTCAGACCAGCA 23030675
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
|| |||| |||||||| || || || | || || ||||| || ||||| || ||||||
Sbjct 23030676 ATGGTTCCAGCATCTTTTGTTGCCTGGCGCTGAGAGTCGTTGAAGTATGCTGGGACAGTA 23030735
Query 282464 ATAACGGCATCTGTTAC 282480
| || |||| ||| ||
Sbjct 23030736 ACCACAGCATTTGTAAC 23030752
>seq4
Length=37912305
Score = 89.7 bits (98), Expect = 4e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240
|||| || ||||| ||||| |||| |||||||| | || || | || |||||||
Sbjct 26121588 TAGCTACTATAGCTTTTGGACTGGGCATTAATAAGGCTGACATTCGCAGAGTCATTCATT 26121647
Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300
| || ||||| ||| | || ||| |||||||| ||||||||||||||||| || ||||
Sbjct 26121648 ATGGTGCTCCTAAGGAAATGGAATCCTATTATCAGGAAATTGGTAGAGCAGGCCGCGATG 26121707
Query 131301 GA 131302
||
Sbjct 26121708 GA 26121709
>seq55
Length=8345910
Score = 86.0 bits (94), Expect = 5e-11
Identities = 208/309 (67%), Gaps = 22/309 (7%)
Strand=Plus/Plus
Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322
|||| || ||||| ||| ||||| || ||| || ||| || ||| | || ||||
Sbjct 2138648 TTTCCAACTCATTCCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCAGCAAA 2138705
Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379
|| | ||| || ||| ||| || ||||| | |||||| | | ||||||
Sbjct 2138706 TTTCTCAGCATCATTAACCATCCTTTCAATCT---CTTCAGG---TGTCAGGCGATTCTG 2138759
Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433
||| ||||| || || || || |||||| ||| || || | || |||||
Sbjct 2138760 GTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCCTTGTCTTCAGCTGTCAC 2138816
Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493
|||||||||||| |||| | ||||| ||||||||||| || || ||||| | |
Sbjct 2138817 CCGAAGAATACCATTCACATCTATTTCAAAGGTGACTTCAATCTGGGGTACCCCGCGGGG 2138876
Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553
|||||| || || || || || |||||| |||||| | ||| ||||| || ||
Sbjct 2138877 AGCAGGAGGAATTCCAGTCAGATCAAATGTACCCAGAAGGTGATTGTCTTTTGTCAAAGG 2138936
Query 281554 TCGTTCACC 281562
|||||||||
Sbjct 2138937 TCGTTCACC 2138945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3737429699205618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |