Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq20 123 2e-23
>seq20
Length=25211774
Score = 123 bits (136), Expect = 2e-23
Identities = 204/292 (70%), Gaps = 2/292 (1%)
Strand=Plus/Plus
Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064
||||||||||| || ||||||||||| || || || |||||||| | | | | |||
Sbjct 21124717 TTTATGTATTACGTGAATGATGGCGTATACGGGTCCTTCAACTGCATCCTTTATGATCAT 21124776
Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123
|| | | | ||| |||||| || ||| | ||| || || || |||| |
Sbjct 21124777 GCACATGTGAAGCCCCTGCTGCAGAAGAGACCCAAGCCC-GATGAGAAGTACTACTCGGC 21124835
Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183
||||||||||| || | || |||||| | ||| |||||||| |||| ||||| |||||
Sbjct 21124836 CAGCATTTGGGGACCCACGTGTGATGGCCTTGATCGCATTGTTGAGCGCTGTGACCTGCC 21124895
Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243
||| | || ||||| |||||| | | ||||| |||||||| || |||| | | |
Sbjct 21124896 CGAGATGCACGTGGGTGACTGGATGCTCTTTGAGAACATGGGTGCCTACACCGTTGCTGC 21124955
Query 21244 CTCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295
| |||| || || || ||||||| | |||| | ||||| || || |||
Sbjct 21124956 CGCTTCGACTTTCAATGGCTTCCAGAGGCCAACGATCCACTACGTGATGTCA 21125007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463167850896240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |