Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq20 123 2e-23 >seq20 Length=25211774 Score = 123 bits (136), Expect = 2e-23 Identities = 204/292 (70%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 ||||||||||| || ||||||||||| || || || |||||||| | | | | ||| Sbjct 21124717 TTTATGTATTACGTGAATGATGGCGTATACGGGTCCTTCAACTGCATCCTTTATGATCAT 21124776 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | ||| |||||| || ||| | ||| || || || |||| | Sbjct 21124777 GCACATGTGAAGCCCCTGCTGCAGAAGAGACCCAAGCCC-GATGAGAAGTACTACTCGGC 21124835 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||||||||| || | || |||||| | ||| |||||||| |||| ||||| ||||| Sbjct 21124836 CAGCATTTGGGGACCCACGTGTGATGGCCTTGATCGCATTGTTGAGCGCTGTGACCTGCC 21124895 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 ||| | || ||||| |||||| | | ||||| |||||||| || |||| | | | Sbjct 21124896 CGAGATGCACGTGGGTGACTGGATGCTCTTTGAGAACATGGGTGCCTACACCGTTGCTGC 21124955 Query 21244 CTCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 | |||| || || || ||||||| | |||| | ||||| || || ||| Sbjct 21124956 CGCTTCGACTTTCAATGGCTTCCAGAGGCCAACGATCCACTACGTGATGTCA 21125007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463167850896240