Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq91 125 1e-23
seq84 125 1e-23
seq148 118 2e-21
seq1 102 2e-16
seq74 98.7 2e-15
seq36 98.7 2e-15
seq2 95.1 2e-14
seq152 84.2 4e-11
seq62 84.2 4e-11
>seq91
Length=4965619
Score = 125 bits (138), Expect = 1e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || ||||| || || || || || || || ||||||| | || || |||||
Sbjct 1585567 ACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGTCCATCTTCC 1585626
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
|| || || ||||||||||| |||||||| ||||| || | |||||||||||||| ||
Sbjct 1585627 AGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCCTTATCCTGG 1585686
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| || ||||||||||| || ||||| ||||| || | | || || || ||
Sbjct 1585687 ATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTGATGGTTTTC 1585746
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | || || | || ||||||||
Sbjct 1585747 CCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq84
Length=7487594
Score = 125 bits (138), Expect = 1e-23
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || ||||| || || || || || || ||||||||| | | | || ||| |
Sbjct 757436 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACATCCATCTCCC 757495
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
|| || || ||||||||| |||||||||| ||||| ||||| |||||||||||||| ||
Sbjct 757496 AGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 757555
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATC 82750
||||| || ||||||||||| || |||||
Sbjct 757556 ATCTTGGCCTTTACATTTTCTATAGTATC 757584
>seq148
Length=5416653
Score = 118 bits (130), Expect = 2e-21
Identities = 131/173 (76%), Gaps = 5/173 (3%)
Strand=Plus/Plus
Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700
|||| ||| | || | ||| || || || ||||||||||| |||||||| ||||| ||
Sbjct 991094 GATAAAATACGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGT 991153
Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760
|| |||||||||||||| || ||||| || ||||||||||| || ||||| |||||
Sbjct 991154 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCA 991213
Query 82761 ACTTCCAAAGTT---ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| |||| || || || || || | || || ||||| ||||||||
Sbjct 991214 ACTTC--GAGTTATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264
>seq1
Length=68039765
Score = 102 bits (112), Expect = 2e-16
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || ||||| || || || || || || || |||||| | | || | |||
Sbjct 38753655 ACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTACGTCCATTTTCC 38753596
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
|| || || ||| ||||||| |||||||| ||||| ||||| |||||||||||||| |||
Sbjct 38753595 AGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 38753536
Query 82722 ATCTTTGCTTTTACATTTT 82740
||||| | ||||||||||
Sbjct 38753535 ATCTTGACCTTTACATTTT 38753517
>seq74
Length=6199102
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/205 (72%), Gaps = 3/205 (1%)
Strand=Plus/Plus
Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666
||| ||||| || || || || || | || |||| || | | | || ||||| || |
Sbjct 2523004 GTGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAG-TAAAGTACATCCATCTTCCAGCCG 2523062
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
|| || |||||||| || ||||| ||||| | ||| |||||||||||| | | |||||
Sbjct 2523063 CTTACCTGCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTTCCTTAGCCCGGATCTT 2523122
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|| |||||||||| || ||||| || || ||||||| || || ||||| ||| |
Sbjct 2523123 GGCCATTACATTTTCTATAGTATCCAAGGGCTCAACTTCCAGTGTGATGGTCTTCCCTAT 2523182
Query 82787 CAACGTCTTTAC-AAATATCTGCAT 82810
|| | ||| | || ||||||||
Sbjct 2523183 -AAGGATTTTGCTGAAAATCTGCAT 2523206
>seq36
Length=17049061
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
|||||||| || || || || || || ||||||| | | | || ||||| || || |||
Sbjct 13827144 AGAGTAGACTCCTTTTGAATGTTGTAGTCAGATA-AGGTATTCCATCTTCCAGCTGCTTT 13827202
Query 82671 CCAG-CAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGC 82729
|| | ||||||| |||||||||||| | ||| | ||||| || || | || ||||| ||
Sbjct 13827203 CCCGGCAAAGATCAGTCTTTGTTGACCAGGAAGAATTCCATCTTTCTTCTGGATCTTGGC 13827262
Query 82730 TTTTACATTTTCAATCGTATC 82750
||||||||||| || |||||
Sbjct 13827263 CTTTACATTTTCTATGGTATC 13827283
>seq2
Length=36660411
Score = 95.1 bits (104), Expect = 2e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||| | || || || | ||||| || ||||| | | | || ||||| || ||
Sbjct 30261520 TGAAGAATGGACTCCTTTTTAATATTGTAGGTAGATAAACTACATCCATCTTCCAGCTGC 30261461
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||| || |||||||||| ||| ||||| |||||||||||||| || |||||
Sbjct 30261460 TTACCAGCAACCATAAGTCTTTGTTAATCAGGAGGCATTCCTTCCTTATCCTGGATCTTG 30261401
Query 82728 G-CTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
| || |||||||||| | ||||| ||||| || | || | || || || || |
Sbjct 30261400 GCCTATTACATTTTCTGTAGTATCCAAGGGTTCAACCACGAATG-GATGGTATTCCCCAT 30261342
Query 82787 CAACGTCTTTACAAATATCTGCAT 82810
| || || || || ||||||||
Sbjct 30261341 AAGGGTTTTGACGAAAATCTGCAT 30261318
>seq152
Length=5913773
Score = 84.2 bits (92), Expect = 4e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369
|||||||||||| || ||| |||| ||||| |||||||| || ||||| | ||||| ||
Sbjct 340401 AGCATTTTTCGGGGCCCAGATGAACTCCTTCATCCATGTGATCATGTACTCCTATTACGG 340342
Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429
| |||| | ||| ||| | | | ||||| || ||||||||||| || || || ||
Sbjct 340341 ACTCACGGCCTTTGGCCCTTGGATCCAGAAGTACTTGTGGTGGAAGCGGTACCTCACCAT 340282
Query 60430 AATGCA 60435
||||
Sbjct 340281 GCTGCA 340276
>seq62
Length=11239103
Score = 84.2 bits (92), Expect = 4e-11
Identities = 104/140 (74%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 82611 AGAGTAG-ATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTT 82669
||||||| ||||||| || || || || ||||||| | | || |||| | | ||
Sbjct 10092329 AGAGTAGGATTCTTT-TGAATGTTGTAGTCAGATAATGTACGTCCATCTTTCTGCTACTT 10092271
Query 82670 TCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGC 82729
||||||||||| ||||||| || || || | |||||||||||||| || ||||| |
Sbjct 10092270 ACCAGCAAAGATCAGTCTTTTCTGGTCACGATGAATTCCTTCCTTATCCTGCATCTTGGT 10092211
Query 82730 TTTTACATTTTCAATCGTAT 82749
|||||||||| || ||||
Sbjct 10092210 CTTTACATTTTTCATAGTAT 10092191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981007094160427
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |