Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq91 125 1e-23 seq84 125 1e-23 seq148 118 2e-21 seq1 102 2e-16 seq74 98.7 2e-15 seq36 98.7 2e-15 seq2 95.1 2e-14 seq152 84.2 4e-11 seq62 84.2 4e-11 >seq91 Length=4965619 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||||| | || || ||||| Sbjct 1585567 ACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGTCCATCTTCC 1585626 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||||||||||| |||||||| ||||| || | |||||||||||||| || Sbjct 1585627 AGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCCTTATCCTGG 1585686 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| ||||| || | | || || || || Sbjct 1585687 ATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTGATGGTTTTC 1585746 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || | || |||||||| Sbjct 1585747 CCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq84 Length=7487594 Score = 125 bits (138), Expect = 1e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || ||||||||| | | | || ||| | Sbjct 757436 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACATCCATCTCCC 757495 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||||||||| |||||||||| ||||| ||||| |||||||||||||| || Sbjct 757496 AGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 757555 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| || ||||||||||| || ||||| Sbjct 757556 ATCTTGGCCTTTACATTTTCTATAGTATC 757584 >seq148 Length=5416653 Score = 118 bits (130), Expect = 2e-21 Identities = 131/173 (76%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 |||| ||| | || | ||| || || || ||||||||||| |||||||| ||||| || Sbjct 991094 GATAAAATACGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGT 991153 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || |||||||||||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct 991154 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCA 991213 Query 82761 ACTTCCAAAGTT---ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| |||| || || || || || | || || ||||| |||||||| Sbjct 991214 ACTTC--GAGTTATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264 >seq1 Length=68039765 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || |||||| | | || | ||| Sbjct 38753655 ACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTACGTCCATTTTCC 38753596 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||| ||||||| |||||||| ||||| ||||| |||||||||||||| ||| Sbjct 38753595 AGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 38753536 Query 82722 ATCTTTGCTTTTACATTTT 82740 ||||| | |||||||||| Sbjct 38753535 ATCTTGACCTTTACATTTT 38753517 >seq74 Length=6199102 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/205 (72%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| ||||| || || || || || | || |||| || | | | || ||||| || | Sbjct 2523004 GTGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAG-TAAAGTACATCCATCTTCCAGCCG 2523062 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || || |||||||| || ||||| ||||| | ||| |||||||||||| | | ||||| Sbjct 2523063 CTTACCTGCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTTCCTTAGCCCGGATCTT 2523122 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || |||||||||| || ||||| || || ||||||| || || ||||| ||| | Sbjct 2523123 GGCCATTACATTTTCTATAGTATCCAAGGGCTCAACTTCCAGTGTGATGGTCTTCCCTAT 2523182 Query 82787 CAACGTCTTTAC-AAATATCTGCAT 82810 || | ||| | || |||||||| Sbjct 2523183 -AAGGATTTTGCTGAAAATCTGCAT 2523206 >seq36 Length=17049061 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 |||||||| || || || || || || ||||||| | | | || ||||| || || ||| Sbjct 13827144 AGAGTAGACTCCTTTTGAATGTTGTAGTCAGATA-AGGTATTCCATCTTCCAGCTGCTTT 13827202 Query 82671 CCAG-CAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGC 82729 || | ||||||| |||||||||||| | ||| | ||||| || || | || ||||| || Sbjct 13827203 CCCGGCAAAGATCAGTCTTTGTTGACCAGGAAGAATTCCATCTTTCTTCTGGATCTTGGC 13827262 Query 82730 TTTTACATTTTCAATCGTATC 82750 ||||||||||| || ||||| Sbjct 13827263 CTTTACATTTTCTATGGTATC 13827283 >seq2 Length=36660411 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||| | || || || | ||||| || ||||| | | | || ||||| || || Sbjct 30261520 TGAAGAATGGACTCCTTTTTAATATTGTAGGTAGATAAACTACATCCATCTTCCAGCTGC 30261461 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||| || |||||||||| ||| ||||| |||||||||||||| || ||||| Sbjct 30261460 TTACCAGCAACCATAAGTCTTTGTTAATCAGGAGGCATTCCTTCCTTATCCTGGATCTTG 30261401 Query 82728 G-CTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 | || |||||||||| | ||||| ||||| || | || | || || || || | Sbjct 30261400 GCCTATTACATTTTCTGTAGTATCCAAGGGTTCAACCACGAATG-GATGGTATTCCCCAT 30261342 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 30261341 AAGGGTTTTGACGAAAATCTGCAT 30261318 >seq152 Length=5913773 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 |||||||||||| || ||| |||| ||||| |||||||| || ||||| | ||||| || Sbjct 340401 AGCATTTTTCGGGGCCCAGATGAACTCCTTCATCCATGTGATCATGTACTCCTATTACGG 340342 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | |||| | ||| ||| | | | ||||| || ||||||||||| || || || || Sbjct 340341 ACTCACGGCCTTTGGCCCTTGGATCCAGAAGTACTTGTGGTGGAAGCGGTACCTCACCAT 340282 Query 60430 AATGCA 60435 |||| Sbjct 340281 GCTGCA 340276 >seq62 Length=11239103 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 82611 AGAGTAG-ATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTT 82669 ||||||| ||||||| || || || || ||||||| | | || |||| | | || Sbjct 10092329 AGAGTAGGATTCTTT-TGAATGTTGTAGTCAGATAATGTACGTCCATCTTTCTGCTACTT 10092271 Query 82670 TCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGC 82729 ||||||||||| ||||||| || || || | |||||||||||||| || ||||| | Sbjct 10092270 ACCAGCAAAGATCAGTCTTTTCTGGTCACGATGAATTCCTTCCTTATCCTGCATCTTGGT 10092211 Query 82730 TTTTACATTTTCAATCGTAT 82749 |||||||||| || |||| Sbjct 10092210 CTTTACATTTTTCATAGTAT 10092191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981007094160427