Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq152 93.3 8e-14 >seq152 Length=5913773 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 ||||||| || || |||||||||| | | |||||||| | || || || || ||||| Sbjct 342741 GATAGCCGCTGCCTTGTGGTGGTACTTTGTGTCTAAAGGAGTGGAGTATTTGGACACAGT 342682 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 |||||| || || ||||| || || || ||| || || || || |||||||| | Sbjct 342681 GTTTTTTATCCTGAGGAAGAAAAACAACCAAGTTTCTTTCCTCCATGTGTATCATCACTG 342622 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||| ||||| || | | ||| | || ||||| ||| ||||||| || || Sbjct 342621 TACCATGTTCACACTGTGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 342571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902674998920480