Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq4931 134 4e-27 >seq4931 Length=27746 Score = 134 bits (148), Expect = 4e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 19423 AATATTGGAGCTCGGTGGTCAGTAGACCAAATGGACAACGTTAATCCATTTAATCACCAC 19482 || || ||| | |||||||| |||| ||||||| ||||||||||||||||| ||| Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777 Query 19483 AGAAACTGGGGTCTCAAATACAGATCTCAACTGTTAGGAAATAGCAGATACTGTCCGTTC 19542 ||||| ||| | | ||||| ||||| || ||||||||| | | || | | || Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837 Query 19543 CACATTCAAGTTCCACAAAAGTATTTTGCAATCAAGAACTTGTTGTTGCTGCCTGGAACA 19602 || ||||| ||||| ||||||| ||||||| | || | ||| | |||| || ||| | Sbjct 16838 CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCG 16897 Query 19603 TACACTTACGAATGGGTACTTCGAAAGGATCCCAATATGGTTTTGCAGTCAAGTCTTGGT 19662 |||| |||||||||| || |||| ||| || ||| |||||||| | |||||| Sbjct 16898 TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGC 16957 Query 19663 AA 19664 || Sbjct 16958 AA 16959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139718950413536