Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_024684.1 Length=32965 Score E Sequences producing significant alignments: (Bits) Value seq4931 140 7e-29 >seq4931 Length=27746 Score = 140 bits (154), Expect = 7e-29 Identities = 188/262 (72%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 16531 ACATTGGGGCAAGGTGGTCTCTGGATGTGATGGATACAGTTAACCCGTTCAACCATCACA 16590 |||| || | |||||||| | ||||||||||| || ||||| || || || ||||||| Sbjct 16719 ACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACA 16778 Query 16591 GAAACACGGGACTGAAGTACAGATCTCAATTGCTGGGCAACGGCAGGTACTGTGATTTCC 16650 |||| || || ||| |||||| ||||| | | || || || | || | || | Sbjct 16779 GAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTC 16838 Query 16651 ACATTCAAGTGCCGCAGAAGTTTTTTGCCATCAAAAATTTGCTGCTCCTCCCTGGAACTT 16710 | ||||| || ||||| ||||||||||| | |||| |||||| || || || ||| | | Sbjct 16839 ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGT 16898 Query 16711 ACAACTACGAGTGGTATTTCAGGAAGGATCCCAACATGGTCTTGCAGTCTACCTTGGGAA 16770 ||| ||||| |||| ||| || || ||| |||||| | |||||| ||| | || | Sbjct 16899 ACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCA 16958 Query 16771 ATGACCTTAGAGCAGACGGGGC 16792 |||| || || | ||||| || Sbjct 16959 ATGATCTGAGGGAGGACGGAGC 16980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105284828823382