Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq40 315 8e-81
seq111 136 5e-27
>seq40
Length=15643725
Score = 315 bits (348), Expect = 8e-81
Identities = 701/1046 (67%), Gaps = 21/1046 (2%)
Strand=Plus/Plus
Query 162061 AGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCA 162120
|||| |||||| || |||| ||| || | |||||||| || || | ||| |||
Sbjct 4998280 AGGGCCTTATGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGACGTCCATG 4998339
Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180
|| ||||| || || || | ||| ||| || | ||||| || | |||||| |
Sbjct 4998340 TCAAACTTATTGGCAAAGAAGTGGTGC---TTGCGAAGCATCCAGTTCAAATCCCCGGCC 4998396
Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240
||||| | |||||||| ||||| ||||| ||| ||| ||||| || | || || |
Sbjct 4998397 CCGAAAATGCACACGGCGCGCACATGCACCCCGTCGCAGGGCGGGTAGGGTGCACCGCGG 4998456
Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300
||| || || ||| |||| |||||||| || |||| | | || | |||||| ||
Sbjct 4998457 GACACGTCGCCTTCGAAGTACTGCCACTTGACAAACCGGGCCACGGCGTTCATGTCAGAC 4998516
Query 162301 GTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTA 162360
||| ||||| | || | || || || || || | || | || || | ||
Sbjct 4998517 AGGTCATACTTATTGCTGGAGGACAAGGAACCTGGCACTTCGGGAATCCTTTGGATGGTG 4998576
Query 162361 GCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACC 162420
||||| |||| || || ||||| ||||| |||| || |||||||||||||| | ||
Sbjct 4998577 GCCCAGAGGTACTCATCGGGACTGTACGTGTCCTGCGCCCACTCCATGAACTTCTGGATG 4998636
Query 162421 GTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCA 162480
| ||| | || | | | ||||| ||| | || | ||| || ||||||||
Sbjct 4998637 TGCTCATCCTCTAACACGAATCTCACGTACTCCCTACTGACCACAAAATAGGCGCTACCT 4998696
Query 162481 GAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACC-----CGTGTTGACTA 162535
|| |||| ||| ||| | ||||| || |||||||||| |||||| | |
Sbjct 4998697 GAGAACAGAGGTGTGCTCAGGGGAGGCGG-----TGTCTTGACCGTCCCCGTGTTAATGA 4998751
Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595
| ||| | | || || | |||||||||||| || |||| || | | |
Sbjct 4998752 TCCGTCCGTTCATGATGACATAGTGCTTCCTCCACCTTTCCTCCTTATGGGCTGGCATCT 4998811
Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655
|| ||||| || |||| ||||| || | || ||||| | |||||||| || |
Sbjct 4998812 TCTCTGTCTCCAGGTTGTTTTCACCCCTGAATGACTGCAGCTTCCTAACCATCTCCAGGT 4998871
Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC-TG 162714
|||| |||| ||||| || ||||||| ||||| || | |||||||| ||| ||
Sbjct 4998872 TGGTTTTAATAGGAAAATCCATGCCGCACAGATTGATCAAGTATTTCCAGCC--CGCATG 4998929
Query 162715 AGTC-CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
| ||||||| |||| | ||||| || || ||||| || |||||||| || || ||
Sbjct 4998930 CATGGCGTACAGCTCCTTCATGCAGTTGAGGTCTGCCTGCACCCGACTCCAAGATGCATA 4998989
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
||| ||| ||||||| | |||| || ||||| || ||||||||| | || |||||
Sbjct 4998990 CACCACGGTCTCCAAGCGGCTGGCCACGAAGACGTTACTGAAACACGATGCGATGCCCAT 4999049
Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
||| || | |||| | || || | |||| | || ||||| | |||||| | ||||
Sbjct 4999050 CACCGCAGCTAAGAAGGCTTCC--TCGGATTTCTTGTCCACGTGAATGCAGTAGAAATTC 4999107
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
|| || ||||||||||| ||| | || |||| ||| || ||||| || || ||||||
Sbjct 4999108 TGCGGCATGTAGATGGCCCGCAGGAGCCTGTCGAGCATTTCAATCTTGTGATGAACCACG 4999167
Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011
|| ||||| || || ||||| | ||||||| || || | | |||| | |||||||
Sbjct 4999168 ATGGAATAGGCAATTGGGAAGGCCACCTCCTCCTTGCTCAGGGGCTCTGTGATGTACTTG 4999227
Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAGGACTCCGCGGTCAAT 163071
|| | | | || | |||||||| |||||||| | ||| || || |||| |
Sbjct 4999228 CGCGTCTTGATGAAGGAGCCACAGTCCCTGGTCATGTTTATATAGTCCTGCGGGGTCCAC 4999287
Query 163072 CTGGGTCGCCGTTTGAACTCCACGGT 163097
| || |||| || ||| |||| ||
Sbjct 4999288 CGAGGGCGCCTCTTAAACCCCACCGT 4999313
>seq111
Length=9602903
Score = 136 bits (150), Expect = 5e-27
Identities = 171/234 (73%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 171517 GTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACT 171576
||| || | |||||||| ||| || || | ||| |||||||||| | ||||| ||| |
Sbjct 6048148 GTCAGTCAAAGTCCCCAGGTGCAACACCTGGCAGATCACCTCCTGG---CCCACCTGATT 6048092
Query 171577 TTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAAC 171636
|| || || || || | || ||||| || |||||||||||||| || ||||| ||
Sbjct 6048091 CTTGGGGTCCTTGACCCGTAGGATGCTGGTGACAGATGTAGTCCCATTTGGATGTGACAC 6048032
Query 171637 GGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGG 171696
| | ||||||||| || ||||| || || ||||| ||||| || ||||| |||||
Sbjct 6048031 ACTCTCAGTACTATTGTCAATTCCTGACCCAGCAACCTTCCAGGCAATCACAGGGGCTGG 6047972
Query 171697 TCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTG 171750
| ||||| ||||||||||| || |||| ||||| ||||| | |||||
Sbjct 6047971 GCGGGCAGTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAAGTTGTAGTG 6047918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577960628532800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |