Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq40 315 8e-81 seq111 136 5e-27 >seq40 Length=15643725 Score = 315 bits (348), Expect = 8e-81 Identities = 701/1046 (67%), Gaps = 21/1046 (2%) Strand=Plus/Plus Query 162061 AGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCA 162120 |||| |||||| || |||| ||| || | |||||||| || || | ||| ||| Sbjct 4998280 AGGGCCTTATGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGACGTCCATG 4998339 Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || || || | ||| ||| || | ||||| || | |||||| | Sbjct 4998340 TCAAACTTATTGGCAAAGAAGTGGTGC---TTGCGAAGCATCCAGTTCAAATCCCCGGCC 4998396 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 ||||| | |||||||| ||||| ||||| ||| ||| ||||| || | || || | Sbjct 4998397 CCGAAAATGCACACGGCGCGCACATGCACCCCGTCGCAGGGCGGGTAGGGTGCACCGCGG 4998456 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||| || || ||| |||| |||||||| || |||| | | || | |||||| || Sbjct 4998457 GACACGTCGCCTTCGAAGTACTGCCACTTGACAAACCGGGCCACGGCGTTCATGTCAGAC 4998516 Query 162301 GTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTA 162360 ||| ||||| | || | || || || || || | || | || || | || Sbjct 4998517 AGGTCATACTTATTGCTGGAGGACAAGGAACCTGGCACTTCGGGAATCCTTTGGATGGTG 4998576 Query 162361 GCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACC 162420 ||||| |||| || || ||||| ||||| |||| || |||||||||||||| | || Sbjct 4998577 GCCCAGAGGTACTCATCGGGACTGTACGTGTCCTGCGCCCACTCCATGAACTTCTGGATG 4998636 Query 162421 GTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCA 162480 | ||| | || | | | ||||| ||| | || | ||| || |||||||| Sbjct 4998637 TGCTCATCCTCTAACACGAATCTCACGTACTCCCTACTGACCACAAAATAGGCGCTACCT 4998696 Query 162481 GAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACC-----CGTGTTGACTA 162535 || |||| ||| ||| | ||||| || |||||||||| |||||| | | Sbjct 4998697 GAGAACAGAGGTGTGCTCAGGGGAGGCGG-----TGTCTTGACCGTCCCCGTGTTAATGA 4998751 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 | ||| | | || || | |||||||||||| || |||| || | | | Sbjct 4998752 TCCGTCCGTTCATGATGACATAGTGCTTCCTCCACCTTTCCTCCTTATGGGCTGGCATCT 4998811 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || ||||| || |||| ||||| || | || ||||| | |||||||| || | Sbjct 4998812 TCTCTGTCTCCAGGTTGTTTTCACCCCTGAATGACTGCAGCTTCCTAACCATCTCCAGGT 4998871 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC-TG 162714 |||| |||| ||||| || ||||||| ||||| || | |||||||| ||| || Sbjct 4998872 TGGTTTTAATAGGAAAATCCATGCCGCACAGATTGATCAAGTATTTCCAGCC--CGCATG 4998929 Query 162715 AGTC-CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | ||||||| |||| | ||||| || || ||||| || |||||||| || || || Sbjct 4998930 CATGGCGTACAGCTCCTTCATGCAGTTGAGGTCTGCCTGCACCCGACTCCAAGATGCATA 4998989 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| ||| ||||||| | |||| || ||||| || ||||||||| | || ||||| Sbjct 4998990 CACCACGGTCTCCAAGCGGCTGGCCACGAAGACGTTACTGAAACACGATGCGATGCCCAT 4999049 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||| || | |||| | || || | |||| | || ||||| | |||||| | |||| Sbjct 4999050 CACCGCAGCTAAGAAGGCTTCC--TCGGATTTCTTGTCCACGTGAATGCAGTAGAAATTC 4999107 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 || || ||||||||||| ||| | || |||| ||| || ||||| || || |||||| Sbjct 4999108 TGCGGCATGTAGATGGCCCGCAGGAGCCTGTCGAGCATTTCAATCTTGTGATGAACCACG 4999167 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 || ||||| || || ||||| | ||||||| || || | | |||| | ||||||| Sbjct 4999168 ATGGAATAGGCAATTGGGAAGGCCACCTCCTCCTTGCTCAGGGGCTCTGTGATGTACTTG 4999227 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAGGACTCCGCGGTCAAT 163071 || | | | || | |||||||| |||||||| | ||| || || |||| | Sbjct 4999228 CGCGTCTTGATGAAGGAGCCACAGTCCCTGGTCATGTTTATATAGTCCTGCGGGGTCCAC 4999287 Query 163072 CTGGGTCGCCGTTTGAACTCCACGGT 163097 | || |||| || ||| |||| || Sbjct 4999288 CGAGGGCGCCTCTTAAACCCCACCGT 4999313 >seq111 Length=9602903 Score = 136 bits (150), Expect = 5e-27 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 171517 GTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACT 171576 ||| || | |||||||| ||| || || | ||| |||||||||| | ||||| ||| | Sbjct 6048148 GTCAGTCAAAGTCCCCAGGTGCAACACCTGGCAGATCACCTCCTGG---CCCACCTGATT 6048092 Query 171577 TTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAAC 171636 || || || || || | || ||||| || |||||||||||||| || ||||| || Sbjct 6048091 CTTGGGGTCCTTGACCCGTAGGATGCTGGTGACAGATGTAGTCCCATTTGGATGTGACAC 6048032 Query 171637 GGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGG 171696 | | ||||||||| || ||||| || || ||||| ||||| || ||||| ||||| Sbjct 6048031 ACTCTCAGTACTATTGTCAATTCCTGACCCAGCAACCTTCCAGGCAATCACAGGGGCTGG 6047972 Query 171697 TCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTG 171750 | ||||| ||||||||||| || |||| ||||| ||||| | ||||| Sbjct 6047971 GCGGGCAGTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAAGTTGTAGTG 6047918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577960628532800