Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq91 120 7e-22
seq36 93.3 1e-13
seq147 84.2 5e-11
>seq91
Length=4965619
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || ||||| ||||| | | || ||| || || || | |||
Sbjct 1585760 AAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCGGATACTATGGAAAAT 1585701
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || |||||||| | || || |||||||| |||||
Sbjct 1585700 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAGCAAAGACTGATCTTT 1585641
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| ||||||||||| ||||| | || |||||| |||| || |||||
Sbjct 1585640 GCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAACATCCAAAAGGAGTCC 1585581
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| || || |||||||||||
Sbjct 1585580 ACTCTTCATCTAGTATTGAGACTTCG 1585555
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| || || |||||||| ||||| || |||| || ||||||| |||||
Sbjct 1585555 CGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTT 1585614
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|||||||||||||||||| || || ||||| || | ||| |||
Sbjct 1585615 TGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGA 1585659
>seq36
Length=17049061
Score = 93.3 bits (102), Expect = 1e-13
Identities = 109/145 (75%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || | ||||| |||||| | || | |||||||| |||||
Sbjct 13827268 GTAAAGGCCAAGATCCAGAAGAAAGATGGAATTCTTCCTGGTCAACAAAGACTGATCTTT 13827209
Query 206305 GCCGG-AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||||| ||||||| |||||||||||| || || | || |||||| | || || |||||
Sbjct 13827208 GCCGGGAAAGCAGCTGGAAGATGGAAT-ACCTTATCTGACTACAACATTCAAAAGGAGTC 13827150
Query 206364 TACTCTTCACCTTGTTTTGAGACTT 206388
||||||| |||| | ||| |||||
Sbjct 13827149 TACTCTTTACCTACTGTTGGGACTT 13827125
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/104 (80%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813
||||| ||| | |||| |||||||||||| || || | || ||||||| || || |
Sbjct 13827125 AAGTCCCAACAGTAGGTAAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAGGT-AT 13827183
Query 204814 TCCATCTTCCAGCTGCTTT-CCGGCGAAGATAAGCCGTTGTTGA 204856
||||||||||||||||||| ||||| ||||| || | |||||||
Sbjct 13827184 TCCATCTTCCAGCTGCTTTCCCGGCAAAGATCAGTCTTTGTTGA 13827227
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || ||||| || ||| || ||| || || || |||||||| || |||
Sbjct 7362951 AAGATCCAGGATAAAGAGGGCATTCCTCCTGACCAGCAGAGGCTGATCTTCGCAGGCAAG 7362892
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| ||| | | || |||||| |||||||||||||||| ||||
Sbjct 7362891 CAGGTGGAAGATGGCCACACTCTTTCTGACTACAACATCCAGAAAGAGTCTACCCTTCGT 7362832
Query 206374 CTTGTT 206379
|| |||
Sbjct 7362831 CTGGTT 7362826
>seq147
Length=2532799
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || ||||| || || || ||| || || || |||||||| || |||
Sbjct 2384033 AAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAGCAGAGGCTGATCTTCGCAGGCAAG 2384092
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| | ||| | | || |||||| ||||||||||||| || || |||
Sbjct 2384093 CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACCCTGCAC 2384152
Query 206374 CTTGTT 206379
|| |||
Sbjct 2384153 CTGGTT 2384158
Score = 84.2 bits (92), Expect = 5e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822
||| ||||| || || ||||||||||||| || ||||||| | ||| | ||||||||
Sbjct 2384158 AACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 2384099
Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCC 204848
||||||||| || |||||||| ||||
Sbjct 2384098 CAGCTGCTTGCCTGCGAAGATCAGCC 2384073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180833642443753
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |