Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq91 120 7e-22 seq36 93.3 1e-13 seq147 84.2 5e-11 >seq91 Length=4965619 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| | | || ||| || || || | ||| Sbjct 1585760 AAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCGGATACTATGGAAAAT 1585701 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||||||| | || || |||||||| ||||| Sbjct 1585700 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAGCAAAGACTGATCTTT 1585641 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| ||||| | || |||||| |||| || ||||| Sbjct 1585640 GCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAACATCCAAAAGGAGTCC 1585581 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || ||||||||||| Sbjct 1585580 ACTCTTCATCTAGTATTGAGACTTCG 1585555 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || |||| || ||||||| ||||| Sbjct 1585555 CGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTT 1585614 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||| || || ||||| || | ||| ||| Sbjct 1585615 TGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGA 1585659 >seq36 Length=17049061 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || | ||||| |||||| | || | |||||||| ||||| Sbjct 13827268 GTAAAGGCCAAGATCCAGAAGAAAGATGGAATTCTTCCTGGTCAACAAAGACTGATCTTT 13827209 Query 206305 GCCGG-AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||||| |||||||||||| || || | || |||||| | || || ||||| Sbjct 13827208 GCCGGGAAAGCAGCTGGAAGATGGAAT-ACCTTATCTGACTACAACATTCAAAAGGAGTC 13827150 Query 206364 TACTCTTCACCTTGTTTTGAGACTT 206388 ||||||| |||| | ||| ||||| Sbjct 13827149 TACTCTTTACCTACTGTTGGGACTT 13827125 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||||| ||| | |||| |||||||||||| || || | || ||||||| || || | Sbjct 13827125 AAGTCCCAACAGTAGGTAAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAGGT-AT 13827183 Query 204814 TCCATCTTCCAGCTGCTTT-CCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||||| ||||| ||||| || | ||||||| Sbjct 13827184 TCCATCTTCCAGCTGCTTTCCCGGCAAAGATCAGTCTTTGTTGA 13827227 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || ||||| || ||| || ||| || || || |||||||| || ||| Sbjct 7362951 AAGATCCAGGATAAAGAGGGCATTCCTCCTGACCAGCAGAGGCTGATCTTCGCAGGCAAG 7362892 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| ||| | | || |||||| |||||||||||||||| |||| Sbjct 7362891 CAGGTGGAAGATGGCCACACTCTTTCTGACTACAACATCCAGAAAGAGTCTACCCTTCGT 7362832 Query 206374 CTTGTT 206379 || ||| Sbjct 7362831 CTGGTT 7362826 >seq147 Length=2532799 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || ||||| || || || ||| || || || |||||||| || ||| Sbjct 2384033 AAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAGCAGAGGCTGATCTTCGCAGGCAAG 2384092 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | || |||||| ||||||||||||| || || ||| Sbjct 2384093 CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACCCTGCAC 2384152 Query 206374 CTTGTT 206379 || ||| Sbjct 2384153 CTGGTT 2384158 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| ||||| || || ||||||||||||| || ||||||| | ||| | |||||||| Sbjct 2384158 AACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 2384099 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||||||| || |||||||| |||| Sbjct 2384098 CAGCTGCTTGCCTGCGAAGATCAGCC 2384073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180833642443753