Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_025678.1 Length=32661 Score E Sequences producing significant alignments: (Bits) Value seq4931 533 3e-147 >seq4931 Length=27746 Score = 533 bits (590), Expect = 3e-147 Identities = 1164/1726 (67%), Gaps = 28/1726 (2%) Strand=Plus/Plus Query 18969 TTTTTTGTATTCTAACGTAGCGCTGTATTTGCCGGATAAATACAAATACACTCCAGCAAA 19028 |||| |||||||||| | ||||||||| |||| ||||| | ||| |||||| ||||| Sbjct 16576 TTTTCTGTATTCTAATATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAA 16635 Query 19029 TGTAACATTGCC-CACGAACACCAACACCTATAAATACATAAACGGCCGCGTTACTTCTC 19087 ||| |||||| || || || | | ||| ||||| || ||| || | | Sbjct 16636 TGTGGTATTGCCGCAGGATCAGCGGCTA-TATGCTTACATGAATTCTCGCATTCCAGCCG 16694 Query 19088 CAAGCCTTGTAGATATTTTTGTAAACGTGGGAGCCAGATGGTCCCCAGATCCAATGGACA 19147 | || ||||| || | | ||| | ||| |||| ||||| |||| ||||||| Sbjct 16695 GGGGTCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACA 16754 Query 19148 ATGTTAATCCGTTTAATCACCACAGAAACGCAGGGCTGCGATACCGTTCCCAACTTTTGG 19207 |||||||| |||||||| |||||||| | || || | ||| | || || || || | Sbjct 16755 CGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAG 16814 Query 19208 GGAATGGGCG-TATAGTTCCCTTTCACATTCAAGTTCCCCAGAAATTTTTTGCAATTAAA 19266 | ||||| || ||| |||| ||||| ||||| ||||| || || ||||||||| ||||| Sbjct 16815 GAAATGGTCGCTATGCTTCC-TTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAA 16873 Query 19267 AACTTGCTCTTGCTGCCTGGTTCATACACCTATGAATGGTCCTTCAGAAAAGACGTAAAT 19326 | ||||| |||| || || || |||| || |||||||| || |||||||| ||||| Sbjct 16874 AGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAAC 16933 Query 19327 ATGATTTTGCAGAGCACGCTAGGAAACGACCTACGAACAGACGGGGCTGTAATTAA-AAT 19385 |||||||||||||| || || || || || || | ||||| || || | ||| | | Sbjct 16934 ATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGC-GTCAGTAACATT 16992 Query 19386 TGAAAGCGTAAATCTTTACGCCAAtttttttCCCATGGCTCACAACACCGCTTCTACTTT 19445 ||| ||| | | || | || | ||| ||||| ||| |||| ||||| ||||||||| | Sbjct 16993 TGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCT 17052 Query 19446 GGAAGCAATGCTGCGGAATGACACCAACGACCAATCTTTTAACGATTATCTCTGTGCTGC 19505 |||| | ||||| || ||||| ||||| || || || ||| ||||| | | Sbjct 17053 GGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGT 17112 Query 19506 CAACATGCTTTACCCCATTCCGGCAAATGCCACTAACGTTCCCATTTCTATTCCGTCCCG 19565 ||||||||||| | ||||| | || || | || || || |||||||| | | Sbjct 17113 TAACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAG 17172 Query 19566 CAATTGGGCAGCCTTCAGAGGGTGGAGTTTTACCAGGTTAAAGGCAAAAGAAACACCCGC 19625 |||||||| ||||| ||||| ||| ||||| || |||| | | |||||||| | Sbjct 17173 GAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAAC 17232 Query 19626 TTTAGGATCAGGTTTTGACCCCTACTTTGTTTACTCCGGATCCATTCCATATTTGGACGG 19685 | || || | |||||||| |||||| ||||| || || || || |||| ||| | Sbjct 17233 CATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGC 17292 Query 19686 TACTTTTTACCTAAACCACACTTTTAAGCGGGTGTCTATTATGTTTGACTCCTCTGTGAG 19745 || ||||| || |||||| | | |||| | || |||||| || || || || Sbjct 17293 GACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAG 17352 Query 19746 TTGGCCGGGCAACGACAGACTTCTCACCCCAAACGAATTTGAAATAAAACGAGTAGTAGA 19805 |||||| || || ||||||||| | | || || |||||| | |||||| ||| || || Sbjct 17353 TTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGA 17412 Query 19806 TGGAGAAGGCTACACTGTAGCACAAAGCAATATGACTAAAGATTGGTTTTTAATTCAAAT 19865 | |||||||| | | || |||| || ||||| ||||||| | | |||||||| Sbjct 17413 CGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAAT 17472 Query 19866 GTTGAGTCATTACAACATTGGTTACCAAGGATTTTACGTTCCCGAAGGTTATAAAGACCG 19925 | | ||| ||||| || || |||||||| ||| || | ||| || ||||||||| | Sbjct 17473 GCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAG 17532 Query 19926 CATGTATTCCTTTTTCCGTAACTTCCAACCTATGACCCGACAAGCAGTGGATTCCATTAA 19985 ||||||||||||| | || || |||| ||| |||||| |||||| | ||| Sbjct 17533 ATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAA 17592 Query 19986 CTACTCAGATTATCAAGAAATCACTCTGGCTCATCAGCATAACAACTCAGGTTTT-GTTG 20044 | | |||||| | |||| |||||||||| || ||||||||| Sbjct 17593 GACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAA 17652 Query 20045 GCTTCATGGGACCAACTATGAGAGAGGGACACGCTTACCCGGCTAACTACCCATATCCAT 20104 | | || ||||| | | || | || || |||| || ||||| || | || Sbjct 17653 CCATTAT-GGACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGC 17711 Query 20105 TAATTGGAGAAACAGCTGTTCCTTCAGTTACGCAGAAAAAGTTCCTCTGCGATCGCACCA 20164 | || |||||| || | | | |||| |||| ||| || | || || | || Sbjct 17712 TCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACAC 17771 Query 20165 TGTGGCGAATTCCATTTTCCAGCAACTTCATGTCAATGGGGGCGCTCACCGACTTGGGAC 20224 ||||| | ||||| || ||| |||||| ||||| ||||| | || || || |||||| Sbjct 17772 TGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGAC 17831 Query 20225 AAAATATGCTGTATGCTAACTCAGCGCACGCCCTTGATATGACTTTTGAGGTGGACCCTA 20284 ||||| |||| ||||| || ||||| || || | || ||||| | || || || | | Sbjct 17832 AAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAA 17891 Query 20285 TGGACGAACCCACGCTGCTTTATG-TTTTGTTTGAAGTTTTCGACGTGGTTCGCGTACAT 20343 |||| ||||| || | | ||| | | |||||||| || ||| || | || ||| Sbjct 17892 TGGAGGAACCAAC-TTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCAT 17950 Query 20344 CAGCCGCACCGAGGCATTATTGAAGCCGTGTACTTGCGTACCCCCTTCTCCGCCGGCAAC 20403 ||||| || ||||| | || |||| | || | | |||||||| || || || ||| Sbjct 17951 CAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAAC 18010 Query 20404 GCTACAACATA---ATGGGCTCCAGTGAAGAAGAACTAAAAGCTATAATTCGCGACTTGG 20460 || ||||||| ||||| || || || ||| ||||| || || ||| ||| Sbjct 18011 GCCGCAACATAAATATGGGGACCTCAGAGGACGAAATAAAACGAATTATCTCCGATTTG- 18069 Query 20461 GCTGCGGACCGTATTTCTTAGGAACATTTGACAAACGCTTTCCAGGCTTTGTGTCCCCTC 20520 | ||| | ||| || || || | ||| ||||||||||| || ||| | || Sbjct 18070 --AATGTACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTTAT----CCGA 18123 Query 20521 ATAAACTGGCT----TGCGCTATAGTTAACACTGCTGGC--AGAGAAACAGGGGGAGTGC 20574 | || || | || || || || ||||| | ||| | ||| || || || | Sbjct 18124 AAGGACAGGTTATGCTGTGCCATTGTAAACAC--CGGGCTTCGCGAAGAGGGCGGTGTCC 18181 Query 20575 ATTGGTTAGCCTTTGGATGGAATCCCAAAACAAAAACTTGCTATCTTTTCGACCCTTTTG 20634 ||||| | || |||| ||||||||| | | ||||| | || | || || || || | Sbjct 18182 ATTGGATTGCGTTTGCTTGGAATCCCTATATTAAAACATTTTACATGTTTGATCCATTCG 18241 Query 20635 GCTTTTCCGATAAAAATCTTAAACAAATATATGAATTTGAATATGA 20680 | || || ||| || || | ||| || | || | || |||||||| Sbjct 18242 GATTCTCGGATCAAGATTTGAAAAAAGTTTACAACTTCGAATATGA 18287 Score = 196 bits (216), Expect = 1e-45 Identities = 920/1439 (64%), Gaps = 53/1439 (4%) Strand=Plus/Plus Query 5374 TTTCAAAGCGTAGAGTTTAGGAGCCAAAAACACAGATTCTGGGGCATAAGCATCTCCCCC 5433 ||| | ||| || | || ||||| ||||||||||| | ||||||||| || Sbjct 4901 TTTTAGAGCATACATCTTTGGAGCTAAAAACACAGACTTTGGGGCATATGCGGGCTGATT 4960 Query 5434 GCATTTTTCACACACTGTTTCGCATTCAACAAGCCAGGTTAGTTCCGGTTCGGAGGGGTC 5493 || ||| || ||| || ||||| || | ||| |||| || || || Sbjct 4961 ACAGCGTTCGCATCTTGTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTCATC 5020 Query 5494 AAAAACTAATTTGCCTCCGttttttttGATTCTTTTCCTACCTTTGGTTTCCATGAGTCG 5553 ||| | ||| || | ||||| ||| | ||| | | |||||||||| ||||| |||| Sbjct 5021 AAAGATTAAATTATTGCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCT 5080 Query 5554 ATGTCCCAAATTTGTCACGAATAAGCTGTCGGTGTCGCCGTATACGGATTTAAGAGG--- 5610 ||| || | ||||||||| || ||||| || || ||||| | ||||| | | Sbjct 5081 ATGCCCTGTTTCTGTCACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCT 5140 Query 5611 GCGTTGACAGAGTGGGGTTCCGCGATCCTCTTCGTAAAGAAACTCTGACCATTCTGAAAC 5670 ||| | || || | ||| | ||| || || | ||| || | |||||| ||| Sbjct 5141 GCGGTCCCAAGGTCG---TCCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGT 5197 Query 5671 GAAAGCTCGGGTCCAGGCTAACACAAAGGAAGCTATTTGGGAGGGGTACCGATCATTGTC 5730 |||||| ||||||||||| | ||||| || || |||||||| ||||| || | ||| || Sbjct 5198 GAAAGCGCGGGTCCAGGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATC 5257 Query 5731 AATGAGGGGGTCTGTGTTTTGAAGGGTGTGCAAACAGAGGTCCGTTTCTTCAGCGTCCAG 5790 || | ||| || |||| | | || | || |||| | || |||| | || Sbjct 5258 TATTTGTGGGGAAGTATTTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAA 5317 Query 5791 GAAAATGATTGGCTTGTAAGTGTAAGTCACGTGATC-ATGGGGGTCTTTTGGGGGGTTAT 5849 |||| |||||||||| | | || ||||||||||| || | ||| | ||| Sbjct 5318 GAAAGTGATTGGCTTAAACTTATATGTCACGTGATCTGTGTCAGAATTT-----GCATAT 5372 Query 5850 AAA--------AGGGGGCGTTGTATTTTTCGTCGTCACTT--TCTTC--CGGTTCGCTGT 5897 ||| | ||| | | ||||| || | | || | || ||| ||| || Sbjct 5373 AAAGTGTCTATGGCGGGAGGGGCCTTTTTAGTTGGCGGTTCCGCATCATCGGAGCGCGGT 5432 Query 5898 CCACGAGCGCCAAATCTTTG--GGTGAGTAA-AGCCGTTGAAAGGATGGTAGGACTTCCG 5954 | | || | || | | ||||||||| || || || || ||| | || | Sbjct 5433 ACGTCATCG-CGAAGCGAAGCCGGTGAGTAACAGGCGGTG-AATTCTGGGATAACACGGG 5490 Query 5955 CACTGAGATTGTCAGTTTCTATAAATGAGGAGGATTTGATATTAATTTGCCCGTTAGCTA 6014 | || ||||| || || ||||| | ||| || | | | | || || | |||| Sbjct 5491 CGCTTAGATTATCTGTCTCTATGTAACAGGTGGCGCTTACAAAAGCTTTACCACTGGCTA 5550 Query 6015 TTCCTCTAAGGGT-TTTGTCGTCCAATTGGTCAGAAAATACAACTTTTTTAGTGTCAAGT 6073 | || | | | | | | || | ||| || | ||| | | ||||||| | || | Sbjct 5551 TGTCTTTCATGATGTCACTTGT-AATTTGATCCGGAAACAGTATTTTTTTATTATCTAAC 5609 Query 6074 TTCGTGGCGAAAGACCCGTATAAAGCGTTCGACAGCAGTTTTGCAATAGACCTCAAAG-- 6131 | ||||| || || ||||| | ||||| |||| |||||| || || | | | Sbjct 5610 CTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTG 5669 Query 6132 ----TTTGGtttttttCCTTGTCTGCCTTTTCCTTGGCGGCTATGTTGAGCTG-TACGTA 6186 | |||||||||||| | ||| || || || ||||| || || | |||||| Sbjct 5670 CTGTTGTGGTTTTTTTCC---GCGGCC---TCTTTTGCCGCTATATT-AGTGGCTACGTA 5722 Query 6187 ATCCCTCGCCACGCATTTCCACTCCGGAAAAACGGTAGTGCGTTCGTCGGGAATGAGACG 6246 || || |||||||| ||||||| | ||| || ||| || || || || | | | Sbjct 5723 TTCTCTTGCCACGCAATTCCACTGCTCAAATACTGTAACTCGCTCATCTGGGACCAACCT 5782 Query 6247 CACCTTCCATCCTCTGTTGTGTAAGGTGACTATATCAATGCTGGTGGCTACCTCTCCTCT 6306 | ||||||||||| || || || || | ||| ||| ||| ||| || ||||| Sbjct 5783 AATCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCT 5842 Query 6307 TAGGCGTTCGTTGGTCCAACACAGTCTTCCACCTTTTTTGGAGCAAAATGGGGGAAGCAC 6366 || ||| || ||||| || || | || |||||| | || |||||||| || | || Sbjct 5843 TAAATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAAC 5902 Query 6367 GTCTAGGAGTGTTTCATCTGGGGGATCGGCATCAATTGTAAAGATCCCCGGTAAAAGTGA 6426 |||| | | ||| | |||| || ||||||||| || || ||||||| || | Sbjct 5903 ATCTAAGTATTCTTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGC 5962 Query 6427 GGAGTCGAAATATGATATCTTTTGAAAATTATTTAAAGTTTGTTG-CCACTTGTGGGCCG 6485 | ||| ||||| || || || | | | | |||| | ||| ||| | | | Sbjct 5963 AGGGTCAAAATAGGAAATTTTGTCACCGGT-TGCAAAGCGTTTTGAATACTGATAGAGAG 6021 Query 6486 CCAGCGCTCTTTCAAACGGATTAAgggggggTCCCCAAGGCATGGGGTGGGTAAGTGCAG 6545 ||| ||| ||||| |||||||| || || || | |||||||| || || | ||| Sbjct 6022 CCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGC 6081 Query 6546 AAGCGTACATTCCGCAAATGTCATACACGTAGAGAGGTTCGTTGAGGATGCCAATATAGG 6605 || ||||||||| |||| ||||| || || | |||||| | | | || || || | Sbjct 6082 TGGCATACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAG 6141 Query 6606 TGGGATAGCATCTTCCTCCGCGGATGCTGTTTCTTACATAGTCATAAAGTTCATGGGAGG 6665 |||| ||||| | ||| || | |||||| | ||||||| | ||||||| || || || | Sbjct 6142 TGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACG 6201 Query 6666 GGGCCAGAAAA--TTGGGACCAA-GATGTGCTTTTTTGGGTTCGTTTGCCGTGTACAATA 6722 ||||||||| | | ||| || ||||| |||| | || | | | | ||| | Sbjct 6202 GGGCCAGAAGAGTATTCGACAAATGATGT--TTTTCTAACTT-TTGAGTCTTAAACACCA 6258 Query 6723 TTTGACGAAAAATGGCGTGAGAATTGGAAGAAATAGTAGGCCTTTGAAAAACATTAAAA 6781 ||| |||||| || |||||| || ||| || || | ||||||||||||||| Sbjct 6259 GTTGCTTAAAAATTGCAAAAGAATTTGAGCTAATTGTTGGACGCTGAAAAACATTAAAA 6317 Score = 176 bits (194), Expect = 9e-40 Identities = 225/310 (73%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 18501 TCAGCAAGCCGCTCCAAATCGGCCAAATTACATAGGCTTCAGAGACAACTTTATTGGTTT 18560 ||||||| ||| ||||| |||||||||| ||||| || || || |||||||| || || Sbjct 16132 TCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTT 16191 Query 18561 AATGTACTACAACAGCACAGGCAACATGGGCGTGCTGGCCGGGCAAGCTTCCCAACTTAA 18620 ||||| || ||||| | |||| |||| || | ||||| ||| | || || ||||| Sbjct 16192 AATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAA 16251 Query 18621 TGCGGTTGTTGACCTGCAAGACCGCAACACGGAACTGTCTTATCAACTAATGCTTGACGC 18680 ||| || | ||||| |||||| | || || ||| |||| ||||| || ||| | || Sbjct 16252 TGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAA 16311 Query 18681 TTTAAGTGACCGTACCCGTTATTTTTCAATGTGGAATCAGGCCGTAGACAGCTATGATCC 18740 |||| || | || || |||| |||||||||| ||||| || |||||||| Sbjct 16312 TTTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCC 16371 Query 18741 AGATGTTAGAATAATAGAAAATCATGGCGTGGAAGATGAACTTCCTACGTACTGCTTTCC 18800 ||| || |||| ||||| ||| ||| || ||||| |||||||| | || |||||||| Sbjct 16372 AGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Query 18801 TCTTTCTGGA 18810 | |||||| Sbjct 16432 GTTATCTGGA 16441 Score = 149 bits (164), Expect = 1e-31 Identities = 457/700 (65%), Gaps = 10/700 (1%) Strand=Plus/Plus Query 4092 GGGGTGGTGTTATAAATGATCCAATCGTAGGAGTTACGTTGGGCGTGATGCTGGAAAATG 4151 ||||||||| | || | ||||||||| || || || || || | || || Sbjct 3622 GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATGGTAGGCAAAGATA 3681 Query 4152 TCTTTAAGCAACAAAGTGATAGCTACCGGGAGGCCTTTAGTGTAGGTGTTAATAAAACGG 4211 ||||| | || | ||||| |||| || ||||||||||| || || |||||||| | | Sbjct 3682 TCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTG 3741 Query 4212 TTTAGTTGAGAGGGGTGCATGCGAGGGGACATAATGTGAAGCTTAGACTGAATTTTTAAG 4271 ||||| |||| ||| ||||| ||| || || ||| |||| |||||||||| Sbjct 3742 TTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGT 3801 Query 4272 TTGGAGATATTGCCTCCCAGGTCTCTGCGGGGATTCATATTGTGAAGAACCACCAACACC 4331 |||| ||||| || | | ||| | || || |||||||| || | ||||| |||| Sbjct 3802 GTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAGA 3861 Query 4332 GTGTAGCCAGTGCACTTGGGGAATTTGTCATGCAACTTGGAAGGAAAAGCATGGAAAAAT 4391 ||| || ||||| ||| |||| ||| | || |||||||| || || |||||| Sbjct 3862 TAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAAT 3921 Query 4392 TTGGAAATTCCTTTATGACCTCCCAGGTTTTCCATACATTCATCCATAATAATTGCAATG 4451 || | ||| | | ||||| | ||||||||||| ||||| || ||||| || ||| Sbjct 3922 TTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTATG 3981 Query 4452 GGGCC---CTGGGCCGCAGCTTGAGCGAATACATTGCGGGAATCGGTGACATCGTAGTTG 4508 || || | |||| || || | ||| ||| | || | ||| || || Sbjct 3982 GGTCCGGTTTTGGCC---GCCTGTACAAATTTATTATTTGGATGCCCTAAATCATAATTT 4038 Query 4509 TAGTCGTGGGTGAGTTCCTCGTAGGACA-TTTTGTGAAACCGGGGGCGAAGGGTGCCGGA 4567 | |||| ||| |||| ||| || | || | ||| | || | || || || | Sbjct 4039 TCTTCGTTTAAGAGATCCTTGTACGATAGTTGCGCGAATCGAGGAGTTAA-TGTACCAGT 4097 Query 4568 TTGAGGGACCAGGGTTCC-TTCTGGACCAGGCACAAAGTTACCTTCGCAAATTTGCATTT 4626 ||||| || | || |||| ||| | | |||| || || |||||| || Sbjct 4098 CTGAGGCACAATTTCACCATTCTTTCCCATG-TTATAGTTTCCCTCTATAATTTGTGCTT 4156 Query 4627 CCCAAGCTTTAATTTCCCCGGGAGGAATCATGTCCACTTGGGGGGCAATaaaaaaaaCGG 4686 ||| | |||||||| || || |||||||| | | |||| | ||| || | | Sbjct 4157 TCCATGACATAATTTCCTGTGGGGGGATCATGTCTGCATAAGGGGTTACAAAGAATATAG 4216 Query 4687 TTTCCGGCGCAGGGGTTATGAGTTGAGTGGAAAGTAAATTTCTTAAAAGTTGTGATTTTC 4746 | ||||| || || ||| | || | || | | |||||| || | ||| ||||||| Sbjct 4217 TCTCCGGGGCGGGATTTAATAATTTGGACGACATAAGATTTCTCAATAATTGGGATTTTC 4276 Query 4747 CACTACCCGTGGGGCCATAAATTACGCCTATGACAGGTTG 4786 ||||||| || || ||||| || || || || || ||||| Sbjct 4277 CACTACCAGTTGGACCATATATGACCCCAATCACCGGTTG 4316 Score = 123 bits (136), Expect = 5e-24 Identities = 260/385 (68%), Gaps = 2/385 (1%) Strand=Plus/Plus Query 17602 AAGATGGCCACCCCATCGATGATGCCTCAGTGGTCGTATATGCACATTGCCGGGCAGGAC 17661 ||||||||||| || |||||| | || || ||||| || | || || || || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 17662 GCCTCCGAATACCTGAGTCCCGGCTTGGTGCAGTTTGCTCGAGCCACCGACACCTACTTC 17721 || || ||||| | ||| | ||| || ||||| | || ||||| || ||||| Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430 Query 17722 ACTCTGGGAAACAAGTTTAGAAATCCCACCGTGGCCCCCACCCACGACGTGACAACTGAC 17781 | || | | || ||||||||||| || || || || || ||||| || || || || Sbjct 15431 TCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGAA 15490 Query 17782 CGCTCACAGCGTTTAACTTTGCGTTTCGTTCCAGTGGACAGGGAAGACACAGCTTACGCG 17841 | || ||| | || || | || ||||||| ||| | ||||| ||| || | Sbjct 15491 AGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATACT 15550 Query 17842 TACAAAACCCGTTTTACGCTTTCAGTAGGGGATAATCGAGTATTAGACATGGCCAGCACT 17901 | ||| |||| ||| || | || || ||||| || ||||||| ||| || | | Sbjct 15551 TTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAGT 15610 Query 17902 TACTTTGATATCAGAGGGGTA-ATAGATAGAGGACCAAGTTTTAAGCCGTACTCGGGCAC 17960 || |||||||| | |||| | ||||| ||||| || |||||| || ||| ||||| Sbjct 15611 TATTTTGATAT-AAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCAC 15669 Query 17961 CGCTTACAACGCTCTTGCTCCCAAA 17985 || ||||| ||||| || ||| Sbjct 15670 AGCATACAATAACCTTGCCCCGAAA 15694 Score = 111 bits (122), Expect = 3e-20 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 25080 CTAAGAAACCGCATTTTTCCAACCCTGTATGCTATTTTCCAACAAAGCCGTGGACAGGAA 25139 |||||||| || |||||||| |||||||||| || |||||| |||| || | || Sbjct 22149 CTAAGAAATAAGATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAA 22208 Query 25140 CCGGAGTTGAAAATAAAAAATCGTTCTCTTCGTTCACTTACCCGCAGCTGCCTATATCAC 25199 | ||||| |||||||| || | | ||||||||| ||||| || |||||| Sbjct 22209 TGTCAACCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCAC 22268 Query 25200 AAAAACGAAGAACAGTTGCAACGCACGTTGGACGACGCAGAAGCTCTGTTCAACAAGTAT 25259 ||||||||||||||| |||| | || |||| |||||||| || || | ||||||| Sbjct 22269 AAAAACGAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGC 22328 Query 25260 TGTG 25263 |||| Sbjct 22329 TGTG 22332 Score = 109 bits (120), Expect = 1e-19 Identities = 191/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 13526 GCCAACCGAAGGAAGAAACAGCATTCGTTATTCTGAATTGGCTCCTCTTTACGACACTAC 13585 ||| || || |||||||| ||||| |||||| || || | | |||| || || Sbjct 12039 GCCGACTGAGGGAAGAAATAGCATAGTTTATTCACCTTTACCTACGTTACACGATACAAC 12098 Query 13586 GCGACTGTACTTGGTGGACAACAAATCTTCCGACATTGCTTCTCTAAACTATCAAAATGA 13645 | | | ||||| | || |||||| | |||||||| |||| ||||| ||||| || || Sbjct 12099 GAAAATTTACTTTATCGATAACAAAGCATCCGACATCTCTTCCCTAAATTATCAGAACGA 12158 Query 13646 CCACAGCAACTTTTTAACTACTGTGGTGCAAAACAACGACTTTACGCCTGCGGAAGCCAG 13705 || || | |||||| | || | ||||| || |||| || ||||| || Sbjct 12159 TCATAGTTTATATTTAACATCCGTCATTCAAAATCCGGATTTTAATCCCCTGGAAGGCAC 12218 Query 13706 CACACAAACCATAAATTTGGACGATAGATCCAGATgggggggAGATATAAAAACCATTTT 13765 ||| ||||| || || || ||||| |||||||| || || ||||||||||| | Sbjct 12219 GGGACATCAGATAAAATTAGATGAAAGATCTAGATGGGGTGGTAATTTAAAAACCATTCT 12278 Query 13766 GCATACTAATATGCCTAACGTAAACGAATACATGTTTA 13803 |||| | || || || || ||| ||| |||||||||| Sbjct 12279 GCATTCAAACATACCAAATATAACCGAGTACATGTTTA 12316 Score = 84.2 bits (92), Expect = 5e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 8550 GAAGACTACCGGGCCCGTCACCTTGAACCTGAAAGAAAGTTCAACAGAATCAATGTCTGC 8609 ||| | |||||| |||||||| ||||| |||||||| | ||||||||||||||| || Sbjct 7927 GAATATTACCGGACCCGTCACTTTGAATCTGAAAGATAATTCAACAGAATCAATTTCCAT 7986 Query 8610 GTCATTGACGGCGGCCTGGCGAAGAATTTCTTGAACGTCTCCGGAATTATCCTGAAAGGC 8669 ||||| | | |||| || || ||||||| | ||||| ||| || ||||| | Sbjct 7987 ATCATTAATGTTAACCTGTTCTAGTATATCTTGAATGCCTCCGCTATTTTCTTGAAATGA 8046 Query 8670 AATTTCGGTCATGAGTTGATC 8690 || || |||| || ||||| Sbjct 8047 TATATCACTCATAAGCTGATC 8067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104312781932918