Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq111 179 4e-40 seq25 168 8e-37 seq35 123 3e-23 seq102 98.7 1e-15 seq128 87.8 2e-12 >seq111 Length=9602903 Score = 179 bits (198), Expect = 4e-40 Identities = 231/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||| | ||||||||||| || | || ||| |||| || || ||| | | ||| || ||| Sbjct 6043894 GTGATAACCCAGGATGAAAGAGAGCGGCTACACACACCGGCATCCTTAAGATGTTCTCTG 6043953 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || || || ||||| | || |||| || |||||||||| ||| | | ||||| Sbjct 6043954 CAAACGTCCCAGGAAGCCTTGCTTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCAGAA 6044013 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| |||| || | || ||||| ||||||||||| || |||||||| | Sbjct 6044014 AACATGATCACTTACAGTGAGAGCCGTGGGGTTGTGGTCCAGCCTGCCTATAAGGATAGA 6044073 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | |||||||| |||| ||||||| ||| || | ||||| || ||||| || || | Sbjct 6044074 GTCAACATCACTGAGCTGGGACTCCGGAACACAGCAATCACCTTCTGGAACACGACTCTG 6044133 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||||||||||| || || || |||| ||| || ||||| || |||| || Sbjct 6044134 GATGATGAGGGGTGCTACATGTGTCTTTTCAACATCTTCGGTTCTGGAAAGGTCTCAGGA 6044193 Query 171372 GTGGCCTGCCTCACCCTCT 171390 ||||||||||| |||| Sbjct 6044194 ACAGCCTGCCTCACACTCT 6044212 >seq25 Length=23434732 Score = 168 bits (186), Expect = 8e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | ||| || | ||||||||||||||| | ||||||||| ||||||||||| Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || |||||||||||||| || |||||||||||||||||||| || |||||||| | || Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||||||| ||| ||||| || ||||||||||| Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCAT 21720555 >seq35 Length=13989929 Score = 123 bits (136), Expect = 3e-23 Identities = 111/140 (79%), Gaps = 12/140 (9%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| |||||||||||| ||| |||| Sbjct 11962818 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACTTGCTGGAAGTGA 11962759 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || |||| || ||||| | ||| |||||||||| Sbjct 11962758 TGCCCCAGGCAGAGAACCA------GGGT------CCAGACATCATGGAACATGTAAACT 11962711 Query 178351 CTCTGGGGGAAAAGCTAAAG 178370 | ||||| || ||||| ||| Sbjct 11962710 CCCTGGGAGAGAAGCTGAAG 11962691 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || | |||||||| |||||||||||||| || ||||| ||||||| Sbjct 11960696 AGCTCCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 11960637 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 11960636 TAGAAGCCTACATGACAA 11960619 >seq102 Length=6955989 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 146907 CAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTG 146966 ||| |||||||| | ||||| | ||| || ||||| || || | ||| ||||| Sbjct 2434924 CAGTTGAATTTTAGGTGGCTCAATGTGATTCAGGTAAGTATGTGCAACTCCCGAAGTGTG 2434983 Query 146967 CACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026 ||||||||||| |||| | ||| | ||| || | ||||||||||| ||| | | Sbjct 2434984 TACAAAGTCCCCTGGCTGCAAGCCCAGGATGTGTGCAATCATGTAGGTGACCAGGGCATC 2435043 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG--TCC--CCCGACCTCTGGTACAGCT 147082 ||||| ||||||||| | ||||||||| || ||| ||| | || ||||||| | Sbjct 2435044 ACTGGCAGTGTTGAAGGACATGCCCAGGCCCGTGCCTCCCACCCAATCTTCGGTACAGTT 2435103 Query 147083 GGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGA 147124 | || || || |||| || |||| | |||||||| |||| Sbjct 2435104 GTCAGGACAGACCCCCTTCTACCACATGGAACTGGCAGAGGA 2435145 >seq128 Length=2787398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/289 (67%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| ||||||||||| | | || || | || || || |||| | | | ||||| Sbjct 906674 GTATTCTCTGGTGTTCATCCTGGGCCTGCTGGGGAACACCATGGTCCTGGTGATTCTCAT 906733 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || ||||||||||||||||| || ||||||||| |||| ||||| ||||| | || Sbjct 906734 CAAATACAAGAGGCTCAGGATTCTGGCCAACATCTACCTGCTCAACTTGGCCATCTCCGA 906793 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTG-GTG 8788 | |||| | | ||| || || || ||||| |||| | | || |||| || ||| Sbjct 906794 CTTGCTCTTCCTCGGCACGCTTCCTTTCTGGATCCACTACGCCACGTGGGG---TGAGTG 906850 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 ||| | | || || | |||| ||||| || || || || ||| |||| Sbjct 906851 GGTTTG--GGGGAGCA--TCCTGTGCAAGTTCATCTCTGGATCTTATTACCTGGGCCTGT 906906 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||||||| || | || ||||||||| | || | |||||||| || || Sbjct 906907 ACAGCGAGATCTTCTTCATCATCCTGCTCACCGTCGACAGGTACCTGGC 906955 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || ||||||||| | | || | | ||||||| ||||| || | || || || Sbjct 891386 GTATTCCCTGGTGTTTATCGTCGGCTTGGTGGGCAATGTTCTGGTCGTCTTGGTTCTGAT 891327 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| |||||| ||| |||||| | ||||| ||| ||||||||||| | || Sbjct 891326 GCAGTACAGAAGGCTCCGGAGCATGACGAGCATCTACCTCCTCAACCTGGCCATCTCAGA 891267 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCA 8765 |||||| | | ||||| || ||||| ||||| || Sbjct 891266 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATCCA 891231 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 |||| ||||| | |||| | || |||||||| ||||||||||||||||||||| | Sbjct 907390 TGGATGTGGCCATGCAGGTGACCGAAGTGATCGCCCACACCCACTGCTGCGTCAACCCGG 907449 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| || || |||||||| | ||||| Sbjct 907450 TCATCTATGCCTTCGTGGGCGAGAGGTTCC 907479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583012508335200