Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq111 179 4e-40
seq25 168 8e-37
seq35 123 3e-23
seq102 98.7 1e-15
seq128 87.8 2e-12
>seq111
Length=9602903
Score = 179 bits (198), Expect = 4e-40
Identities = 231/319 (72%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||| | ||||||||||| || | || ||| |||| || || ||| | | ||| || |||
Sbjct 6043894 GTGATAACCCAGGATGAAAGAGAGCGGCTACACACACCGGCATCCTTAAGATGTTCTCTG 6043953
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| || || ||||| | || |||| || |||||||||| ||| | | |||||
Sbjct 6043954 CAAACGTCCCAGGAAGCCTTGCTTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCAGAA 6044013
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||||| |||| || | || ||||| ||||||||||| || |||||||| |
Sbjct 6044014 AACATGATCACTTACAGTGAGAGCCGTGGGGTTGTGGTCCAGCCTGCCTATAAGGATAGA 6044073
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
| |||||||| |||| ||||||| ||| || | ||||| || ||||| || || |
Sbjct 6044074 GTCAACATCACTGAGCTGGGACTCCGGAACACAGCAATCACCTTCTGGAACACGACTCTG 6044133
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
|| || ||||||||||||| || || || |||| ||| || ||||| || |||| ||
Sbjct 6044134 GATGATGAGGGGTGCTACATGTGTCTTTTCAACATCTTCGGTTCTGGAAAGGTCTCAGGA 6044193
Query 171372 GTGGCCTGCCTCACCCTCT 171390
||||||||||| ||||
Sbjct 6044194 ACAGCCTGCCTCACACTCT 6044212
>seq25
Length=23434732
Score = 168 bits (186), Expect = 8e-37
Identities = 134/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045
||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||||||
Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656
Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105
|| |||||||||||||| || |||||||||||||||||||| || |||||||| | ||
Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596
Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
|| || |||||||| ||| ||||| || |||||||||||
Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCAT 21720555
>seq35
Length=13989929
Score = 123 bits (136), Expect = 3e-23
Identities = 111/140 (79%), Gaps = 12/140 (9%)
Strand=Plus/Minus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| ||||||||||||||||| |||||||||||| ||| ||||
Sbjct 11962818 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACTTGCTGGAAGTGA 11962759
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| || |||| || ||||| | ||| ||||||||||
Sbjct 11962758 TGCCCCAGGCAGAGAACCA------GGGT------CCAGACATCATGGAACATGTAAACT 11962711
Query 178351 CTCTGGGGGAAAAGCTAAAG 178370
| ||||| || ||||| |||
Sbjct 11962710 CCCTGGGAGAGAAGCTGAAG 11962691
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || | |||||||| |||||||||||||| || ||||| |||||||
Sbjct 11960696 AGCTCCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 11960637
Query 178522 TAGAAGCTTACATGACAA 178539
||||||| ||||||||||
Sbjct 11960636 TAGAAGCCTACATGACAA 11960619
>seq102
Length=6955989
Score = 98.7 bits (108), Expect = 1e-15
Identities = 156/222 (70%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 146907 CAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTG 146966
||| |||||||| | ||||| | ||| || ||||| || || | ||| |||||
Sbjct 2434924 CAGTTGAATTTTAGGTGGCTCAATGTGATTCAGGTAAGTATGTGCAACTCCCGAAGTGTG 2434983
Query 146967 CACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026
||||||||||| |||| | ||| | ||| || | ||||||||||| ||| | |
Sbjct 2434984 TACAAAGTCCCCTGGCTGCAAGCCCAGGATGTGTGCAATCATGTAGGTGACCAGGGCATC 2435043
Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG--TCC--CCCGACCTCTGGTACAGCT 147082
||||| ||||||||| | ||||||||| || ||| ||| | || ||||||| |
Sbjct 2435044 ACTGGCAGTGTTGAAGGACATGCCCAGGCCCGTGCCTCCCACCCAATCTTCGGTACAGTT 2435103
Query 147083 GGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGA 147124
| || || || |||| || |||| | |||||||| ||||
Sbjct 2435104 GTCAGGACAGACCCCCTTCTACCACATGGAACTGGCAGAGGA 2435145
>seq128
Length=2787398
Score = 87.8 bits (96), Expect = 2e-12
Identities = 195/289 (67%), Gaps = 8/289 (3%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| ||||||||||| | | || || | || || || |||| | | | |||||
Sbjct 906674 GTATTCTCTGGTGTTCATCCTGGGCCTGCTGGGGAACACCATGGTCCTGGTGATTCTCAT 906733
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|| ||||||||||||||||| || ||||||||| |||| ||||| ||||| | ||
Sbjct 906734 CAAATACAAGAGGCTCAGGATTCTGGCCAACATCTACCTGCTCAACTTGGCCATCTCCGA 906793
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTG-GTG 8788
| |||| | | ||| || || || ||||| |||| | | || |||| || |||
Sbjct 906794 CTTGCTCTTCCTCGGCACGCTTCCTTTCTGGATCCACTACGCCACGTGGGG---TGAGTG 906850
Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848
||| | | || || | |||| ||||| || || || || ||| ||||
Sbjct 906851 GGTTTG--GGGGAGCA--TCCTGTGCAAGTTCATCTCTGGATCTTATTACCTGGGCCTGT 906906
Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897
||||||| || | || ||||||||| | || | |||||||| || ||
Sbjct 906907 ACAGCGAGATCTTCTTCATCATCCTGCTCACCGTCGACAGGTACCTGGC 906955
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || ||||||||| | | || | | ||||||| ||||| || | || || ||
Sbjct 891386 GTATTCCCTGGTGTTTATCGTCGGCTTGGTGGGCAATGTTCTGGTCGTCTTGGTTCTGAT 891327
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||||| |||||| ||| |||||| | ||||| ||| ||||||||||| | ||
Sbjct 891326 GCAGTACAGAAGGCTCCGGAGCATGACGAGCATCTACCTCCTCAACCTGGCCATCTCAGA 891267
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCA 8765
|||||| | | ||||| || ||||| ||||| ||
Sbjct 891266 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATCCA 891231
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382
|||| ||||| | |||| | || |||||||| ||||||||||||||||||||| |
Sbjct 907390 TGGATGTGGCCATGCAGGTGACCGAAGTGATCGCCCACACCCACTGCTGCGTCAACCCGG 907449
Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
||||||| || || |||||||| | |||||
Sbjct 907450 TCATCTATGCCTTCGTGGGCGAGAGGTTCC 907479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583012508335200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |