Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq66 127 2e-24
seq147 105 6e-18
seq91 87.8 2e-12
>seq66
Length=5789316
Score = 127 bits (140), Expect = 2e-24
Identities = 144/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | || ||| || | || ||||||||||| || |||||
Sbjct 2649631 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 2649572
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||||| |||||| || | || | || |||||||||| |||||| ||| | | |
Sbjct 2649571 GATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 2649512
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | |||||||||| ||||| || || || |||| || |||||
Sbjct 2649511 CTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 2649452
Query 35725 AAATATCTGCATT 35737
||| |||||||||
Sbjct 2649451 AAAGATCTGCATT 2649439
Score = 125 bits (138), Expect = 6e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | || ||| || | || ||||||||||| ||||||||
Sbjct 2649859 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAA 2649800
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| || ||||||||| | |||| || ||||||||| |||||| ||| | | |
Sbjct 2649799 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 2649740
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | |||||||||| ||||| || || || |||| || |||||
Sbjct 2649739 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 2649680
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 2649679 GAAGATCTGCAT 2649668
>seq147
Length=2532799
Score = 105 bits (116), Expect = 6e-18
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | || || | || ||||||||||| || || ||
Sbjct 2383912 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAA 2383853
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| || ||||||||| | ||| | || ||| || ||| |||||| ||||| | |
Sbjct 2383852 GATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATT 2383793
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || || || | || ||||| | ||||| || || || ||||| || |||||
Sbjct 2383792 CTCAATGGTATCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 2383733
Query 35725 AAATATCTGCATTCTG 35740
|| ||||||||||||
Sbjct 2383732 GAAGATCTGCATTCTG 2383717
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| || | | || || | || ||||||||||| || || ||
Sbjct 2384140 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAA 2384081
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| || ||||||||| | ||| | || ||| || ||| |||||| ||||| | |
Sbjct 2384080 GATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATT 2384021
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || || || | |||||||||| || || || || || |||| || |||||
Sbjct 2384020 CTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCAC 2383961
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 2383960 GAAGATCTGCAT 2383949
>seq91
Length=4965619
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||| || | ||||| || | ||| | || ||||||||| |||||||| || |
Sbjct 1585549 CCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAT 1585608
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| ||| | | || |||||||||||||| ||||| |||| | ||||| || | |
Sbjct 1585609 AAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGC 1585668
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| |||||| ||| | | || ||| || || | ||| |||
Sbjct 1585669 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACC 1585728
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
| | ||||| ||||| ||||| | ||||| | || |||||||| |||
Sbjct 1585729 TTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCATCCTG 1585779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450426242660440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |