Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq66 100 3e-16 seq147 96.9 3e-15 seq91 96.9 3e-15 >seq66 Length=5789316 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 2649666 CCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649607 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| ||||| | ||||||||| || ||| Sbjct 2649606 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGT 2649547 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| | ||||| Sbjct 2649546 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649487 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || ||||| || || || | || || || || || |||||| Sbjct 2649486 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 2649894 CCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649835 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 2649834 AGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2649775 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 2649774 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649715 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 2649714 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668 >seq147 Length=2532799 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || ||||| ||||| || ||||||||||| | Sbjct 2383947 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 2383888 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| |||||||| || |||| | |||||| || || || Sbjct 2383887 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2383828 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || || || || || | || || | || || Sbjct 2383827 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACC 2383768 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || ||||| ||||| || || || || || || ||||| || |||||| || Sbjct 2383767 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTCTG 2383717 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| || || || ||||||||||| | Sbjct 2384175 CCACCCCTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 2384116 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| |||||||| || |||| | |||||| ||||| || Sbjct 2384115 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 2384056 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || || || || || | || || | ||||| Sbjct 2384055 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACC 2383996 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || ||||| | || || ||||| || ||||| Sbjct 2383995 TCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 >seq91 Length=4965619 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| ||| || || || || ||||| |||||||| ||||||||||| | || || Sbjct 1585558 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGT 1585617 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || ||||| |||| | |||||||| || | || ||||| Sbjct 1585618 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCC 1585677 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || |||| || || || | ||| || | ||| || Sbjct 1585678 TTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTG 1585737 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | ||||||| |||||| ||||| Sbjct 1585738 ATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504986544526360