Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq22 138 2e-27 seq17 125 1e-23 seq20 111 2e-19 seq190 100 4e-16 seq113 93.3 6e-14 seq83 91.5 2e-13 >seq22 Length=17426531 Score = 138 bits (152), Expect = 2e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || ||||||||||| |||||||| ||||| || |||||||| || | || | | | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||||| ||| ||||| | |||||| |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || ||||||||||| ||||| | || Sbjct 1398048 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATGGAC 1398107 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||||||||| || ||||||||||| ||||| ||||| || || | | | || Sbjct 1398108 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGGCTG 1398167 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 1398168 TTTCTTATACCAT 1398180 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 ||||||| | ||| |||||||| |||||||| || || | || || || ||||| | | Sbjct 1425065 CACTAAACACTTTCTTTGTTTCTTTGTGTAAGTTGGAGACTGCAATCCTTGCTGCCAAGA 1425124 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | |||||||||||||| | ||||| | || || ||| | || |||||||| ||||| | Sbjct 1425125 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTGGCAGCTGTCTCAGCAGCTAATGTATCCA 1425184 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507 ||| | || || || || | || || ||||| || || ||||||| |||| Sbjct 1425185 GTTCCACCGTAGTGACCCCACTGTAGAGGCCTTGGATTACCTTCATGGTGATTT 1425238 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| || || | || | ||||| |||||||| || || | Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTGGCTAGGTCACAACTGGCTTCCAGG 1401813 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || || | |||||| | || |||||| |||| || Sbjct 1401814 GCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACTGAGCTTCTGGACTCTCA 1401873 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | || ||||| |||||||| | || ||||||||||| || || || Sbjct 1401874 AAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGGG 1401933 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 1401934 CGATGGCGTTTATTTGA 1401950 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 1409101 ACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 1409160 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| ||| Sbjct 1409161 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGT 1409220 Query 69715 TCTAGATATATCGC 69728 ||||| || || || Sbjct 1409221 TCTAGGTAAATAGC 1409234 Score = 89.7 bits (98), Expect = 7e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 ||||| ||||| | ||||| | || ||||| ||||||||||| ||||||| ||| Sbjct 1408306 TCTTTCTCATACCTTTCATATAACTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCA 1408365 Query 69550 GGACATTCATTTGGACACATCAATGACCA 69578 ||||||||||||||||||||||| ||||| Sbjct 1408366 GGACATTCATTTGGACACATCAAAGACCA 1408394 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 |||| || ||||| || | ||||| || || ||||||||||| || || ||||| || | Sbjct 1417965 TAGTGCCAGCATTGAAGAGAGTAGGTGAGGCATGAGTGAACCACTTCTCTGAAAGAAGGT 1418024 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||||||||| || || | || || || | ||||| || | | || | ||||| Sbjct 1418025 TGTATGTTTCGATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCA 1418084 Query 70109 ACATATGCTGAGGTCGTTC 70127 |||||||||| |||| ||| Sbjct 1418085 ACATATGCTGTGGTCTTTC 1418103 >seq17 Length=26966924 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| || || | ||| || Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| ||||||||||||||||| ||||| | ||||||||||| ||||| || Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGCC 9450883 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 9450882 ACCACTCTTTCCCC 9450869 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||||||||| || |||||||||||||| |||||||| || || | || || | Sbjct 9446976 CCAAATTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCTAAGATGTGAGAGATGA 9446917 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109 |||| || ||||||| | | | ||| ||||||| | | ||| ||||||| Sbjct 9446916 AATACTTCTCATCGGATTTAAGTTTGTTCCAGTGAGGAAGATCCTTTGATA 9446866 >seq20 Length=25211774 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | || || ||||| ||||| |||||||| || || ||||| | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| ||||| | || ||||| |||||||||||||| || || || || ||||| | Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || ||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 39275 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTTTTTGG 39331 |||||| |||| || | ||| ||| ||| | | ||||| ||||||||| | || Sbjct 21306521 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGACATCACTCCCATTCTCTGA 21306580 Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 || || || || | ||||| || || ||||| || ||||||| ||| ||||| |||||| Sbjct 21306581 TACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATG 21306640 Query 39392 AAATCAAACGGATT 39405 |||||||| ||||| Sbjct 21306641 AAATCAAATGGATT 21306654 >seq190 Length=3085523 Score = 100 bits (110), Expect = 4e-16 Identities = 183/265 (69%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGA-TT 37396 ||| ||| ||| || || || || ||| | || || || ||| |||| | ||| || Sbjct 695218 TTAATTCTTTCCAGTGGAACCCAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTT 695276 Query 37397 GTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGC 37456 | ||||| | | || |||||| | | ||| | | || |||||||| |||| ||| | Sbjct 695277 GAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCAC 695336 Query 37457 CCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCC 37516 || | || | || ||| || ||| || ||| | || || || |||| ||| |||| Sbjct 695337 CCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCC 695396 Query 37517 TATAATCTTCATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCG 37573 ||||||||||||| || || || |||||||||| || |||| || ||| || | Sbjct 695397 TATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAG 695456 Query 37574 ATCTAGGAGCTATTCTTCCATAACA 37598 | | ||||||| ||||||||| || Sbjct 695457 AACGTGGAGCTACTCTTCCATAGCA 695481 >seq113 Length=6198913 Score = 93.3 bits (102), Expect = 6e-14 Identities = 121/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 37435 ATTAGCTGAGCTATTCTATCGCCCGTATTTATTTTAAAATTACATTTTCCATTATTTATC 37494 || |||||||| |||| ||| ||| | || | || ||| || ||| ||| ||| | | Sbjct 4702020 ATGAGCTGAGCAATTCGATCACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGC 4702079 Query 37495 AGAATGACTCCAATATTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTACATCAAT- 37553 | || || |||| ||| ||||||||||||||||| || || || ||||||||||||| Sbjct 4702080 AATATAACACCAAAATTTCCCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATG 4702139 Query 37554 --ACCTTTTAGAGACAAACCCGATCTAGGAGCTATTCTTCCATAACA 37598 |||| || ||| || | | ||||||| ||||||||| || Sbjct 4702140 AAGTGTTTTGCAGCCAAGCCAAAACGTGGAGCTACTCTTCCATAGCA 4702186 >seq83 Length=9551901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 37378 TCTGTACCATCTAGAGA-TTGTACTTCATTCAGATCAGGATAATATATACGTTGATAGAT 37436 || ||| |||| | ||| ||| ||||| | | || |||||| | || | | | || Sbjct 3111987 TCAGTATCATCCA-AGACTTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAAT 3111929 Query 37437 TAGCTGAGCTATTCTATCGCCCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAG 37496 |||||||| ||||||| ||| | || | || ||| || ||| ||| ||| | || Sbjct 3111928 GAGCTGAGCAATTCTATTACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAA 3111869 Query 37497 AATGACTCCAATATTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTACATCAAT--- 37553 || || |||| ||||||||||||||||||| || || || |||||||||| || Sbjct 3111868 TATAACACCAACTTTCCCCCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAA 3111809 Query 37554 ACCTTTTAGAGACAAACCCGATCTAGGAGCTATTCTTCCATAACA 37598 |||| || ||| || || | ||||||| ||||||||| || Sbjct 3111808 GTGTTTTGAAGCCAAGCCAGAACGTGGAGCTACTCTTCCATAGCA 3111764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686349029432520