Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_027705.1
Length=33090
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 480 2e-131
>seq4931
Length=27746
Score = 480 bits (532), Expect = 2e-131
Identities = 1446/2211 (65%), Gaps = 81/2211 (4%)
Strand=Plus/Plus
Query 20078 GCTCTCGCTCAGCAAGCCGCACCAAACAGACCTAACTACGTGGCCTTCAGAGACAATTTC 20137
|| |||||||||||| ||| |||||||| || || || | | || || || || ||
Sbjct 16124 GCCCTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTT 16183
Query 20138 ATAGGACTGCTTTACTACAACAGCAACGGCAATCTAGGCGTGTTGGCCGGCCAGGCGTCC 20197
|| || | | | || ||||| || ||||| | || || || ||||| || ||||
Sbjct 16184 ATCGGGTTAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCA 16243
Query 20198 CAGCTGAACGCCGTAGTGGATTTACAAGACCGCAACACAGAATTGTCCTATCAATTGCTG 20257
||||| || || || | || | |||||| | || ||||||||||| ||||| | ||
Sbjct 16244 CAGCTTAATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATG 16303
Query 20258 CTCGACAGCTTGGTAGATCGTAACCGTTACTTT-GCTATGTGGAACCAAGCGGTAGACAG 20316
| || | || ||| | | || || | ||| ||||||| ||||| || ||
Sbjct 16304 TTAGATAATTTACACGATAGAACTCGATATTACAGCT-TGTGGAATCAAGCCGTGGATTC 16362
Query 20317 CTATGATCCAGACGTTCGAATTGTCGAAAATGTGGGAGTAGAGGATGAGATGCCCAACTA 20376
||||||||||| || ||||| | || ||| | |||||||| || || | || || ||
Sbjct 16363 ATATGATCCAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTA 16422
Query 20377 T-GCTTATCCCCTTTCTGGCATGAA-TCCCACTGCGGCGAAGCCCGTAACAGCTGAA-GG 20433
| |||| ||| | ||||| ||| ||| | || | | || | | | || ||
Sbjct 16423 TTGCTT-TCCGTTATCTGG-ATGTTCTCCTATTGATTATACTGCTGTTA-ATCAAAATGG 16479
Query 20434 AGCCGCTGTTCCAAACGAAGAAGGGTG----GGTGTC-------CAAGGGGAACCTGGAC 20482
| || | ||| || || || ||| || ||| || || | ||
Sbjct 16480 ACAAGCAATCAATAAC-AATAACCCTGCGCAGGT-TCTTATAGGCAAAGGAAATGTTGAA 16537
Query 20483 GCTTTGGAGTTGAACATACCCGCTAACCTGTGGAGGGGCTTTCTCTATTCCAACGTGGCT 20542
|||| | |||||| | || |||||||||| | ||||| ||||| || | ||
Sbjct 16538 TGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCG 16597
Query 20543 ATGTATCTCCCAGATAAGTATAAATTTACGCCGCCTAACACCACCCTGCCCGAAAATGAG 20602
||||||| || ||||| | |||| || || | || |||| | || ||
Sbjct 16598 CTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAG 16657
Query 20603 AACACCTATGACTACATGAA----CGGAAAACTTCCAGCCGCTGGTTTAATTGATAGCTA 20658
|||| |||||||| || | ||||||||| ||| | | || ||
Sbjct 16658 CGGCTATATGCTTACATGAATTCTCGCA----TTCCAGCCGGGGGTCTGGTAGAGGATTA 16713
Query 20659 CGTGAACGTGGGCTCCCGGTGGTCCCTCGATGTGATGGATAATATTAACCCTTTTAATCA 20718
| ||| | || || ||||||| | ||||||||||| | |||| || ||||||||
Sbjct 16714 TATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCA 16773
Query 20719 TCACCGCAACGCCGGCCTACGCTACCGATCTCAAATTCTTGGCAACGGAAGATATTGTAA 20778
|||| | || | || | | ||| | ||||| | | || || || | ||| |
Sbjct 16774 TCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTC 16833
Query 20779 ATTTCACATTCAAGTTCCCCAGAAATTCTTCGCTATTCGCAACTTGCTTCTGCTTCCGGG 20838
||||| ||||| ||||| || || || || || || | ||||||||||| |||||
Sbjct 16834 CTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGG 16893
Query 20839 AACATACACGTATGAGTGGTCTTTCCGCAAAGACGTCAACATGATTCTGCAGAGCACCTT 20898
| | |||| || || |||||||| | ||||| || ||||||||| ||||||| || |
Sbjct 16894 ATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCT 16953
Query 20899 GGGAAACGATCTTAGAGTAGACGGTGCTTCGATCACGTACGAAAACATCACTCTCTACGC 20958
|| || ||||| || | ||||| || || | || | || | ||| | || | ||
Sbjct 16954 TGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGC 17013
Query 20959 CTCTTTCTTTCCCATGGCCCACAACACAGCTAGCACCCTGGAGGCTATGTTAAGAAACGA 21018
|||||||||| ||| | || ||||| ||| || ||||| ||||| | | || ||
Sbjct 17014 TACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGA 17073
Query 21019 TACCAACGATCAGTCTTTCATAGATTA-CTTATCGGCGGCTAACATGCTTTACACCATCC 21077
||||||||||| ||| || || ||| | || | |||||||||||| | ||
Sbjct 17074 GGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCTAT-T 17131
Query 21078 CCGCCGGGGCCACCCA-AGTTCCCATATCGATCCCATCAAGAAACTGGGCCGCTTTCCGC 21136
|| ||| | | | | ||| || || || || ||| |||| || ||||| || || |
Sbjct 17132 CCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191
Query 21137 GGGTGGAGTTTCACCCGGATCAAGGCCAAAGAAACCCCAGCGCTAGGTTCGCCCTTCGAT 21196
|| ||| || || | | || | ||||| ||| | | || || | || ||
Sbjct 17192 GGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGAC 17251
Query 21197 CCCTACTTCAACTATAGTGGATCCATTCCCTATCTCGACGGAACCTTCTATCTCAGTCAC 21256
|| ||||| | || || || || || ||| || | ||||| ||| | ||||
Sbjct 17252 CCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCAC 17311
Query 21257 ACCTTTAGGAGGGTTTCCGTTCAGTTTGACTCCTCCGTCACTTGGCCCGGAAACGACCGT 21316
|| | || | ||| || | |||||||| || || || | |||||| ||||| ||| |
Sbjct 17312 ACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGA 17371
Query 21317 CTTCTCACTCCTAATGAGTTTGAGATCAAACGCCTTATCGATGGAGAAGGCTATAACGTG 21376
||| | | |||||||| ||| | || ||| | | || | ||||||||||||
Sbjct 17372 CTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACC 17431
Query 21377 TCGCAGAGCAACATGACTAAAGACTGGTTTTTGGTTCAGATGTTGGCCCACTACAACATC 21436
|| ||||||| || ||||| || |||| | || |||| ||| | || |||||||| |||
Sbjct 17432 TCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATC 17491
Query 21437 GGGTATCAAGGTTATCACCTACCGGAATCTTACAAAGATAGGTGGTATGGTTTTCTACGA 21496
|| || ||||||| ||||||||| | ||| |||||||| | |||| ||| || ||
Sbjct 17492 GGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGA 17551
Query 21497 AACTTTCAACCGCTCTGTCGTCAGGTGCCTGACCCTCTTCGTTTCACCG---ACTACAAA 21553
|| ||| |||| | ||| | || || || || | || || | | || ||
Sbjct 17552 AATTTTGAACCCATGTGTAGACAAGT---TGTGGATCCTGGTAAGACGGAAAAATATCAA 17608
Query 21554 GCCGTCTCTGTCTTGA--ATCAACACAATAACTCTGGTTTTACGGGCTACAACAGCGCTG 21611
|||| | |||| | |||| || ||||| || ||||||| | ||| ||
Sbjct 17609 CCCGTTGC--TCTTAAATATCAGCATAATAATTCAGGTTTTA------AAAACCATTATG 17660
Query 21612 GACTCAT---GCGCGAGGGACAACCTTATCCCGCTAACTGGCCTTATCCCCTGATTGGCA 21668
||| | | ||| | || || ||||||||| ||||||||||| || || || ||
Sbjct 17661 GACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAG 17720
Query 21669 AAAACGCCGTCGCGAGCGTCACAGAACGCAAGTTCTTGTGCGACAAAACGCTCTGGCGCA 21728
|| | || | | | | || | | || || || || |||| ||| || ||| | |
Sbjct 17721 AACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGA 17780
Query 21729 TCCCCTTCTCTAGCAATTTCATGTCTATGGGCACTCTGACAGATCTCGGTCAAAACTTGC 21788
| || ||||| ||| || ||||| ||||| || || |||||||| || ||||| ||||
Sbjct 17781 TTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGC 17840
Query 21789 TATACGCTAATGCTGCTCACGCCTTGGACATGACCTTCGAAGTGGACCCTATGGAAGAAC 21848
|||| || ||| | ||||| || || |||||||| ||||||| || | ||||| ||||
Sbjct 17841 TATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAAC 17900
Query 21849 CAACTCTGTTGTAT-CTCCTGTTTGAAGTGTTCGACGTGGCTAGGGTACATCAACCACAT 21907
||||| | | || | || |||||||| || ||| || || || ||||| || ||
Sbjct 17901 CAACT-TATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAA 17959
Query 21908 CGAGGCGTCATAGAAGTGGTCTATTTAAGAACGCCGTTCTCCGCAGGAAACGCAACTACT 21967
||||| ||||||||||| | ||| ||||||| || || || ||||| ||||| | ||
Sbjct 17960 CGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACA 18019
Query 21968 TAAACCTCACCCTGTCGCGCAGCTGTCATGGGGAGTACGGAGACAGAACTGAAACGCATT 22027
|||| ||||||| | ||| ||| | ||||| |||
Sbjct 18020 TAAA----------------------TATGGGGACCTCAGAGGACGAAATAAAACGAATT 18057
Query 22028 CTAAGCGATCTCAACGTAACCCCATTACTGCTTGGG-ACCTATGATAAGAGGTTTCCTGG 22086
| |||| | || ||| | || | ||||| ||||||||||| | ||||| ||
Sbjct 18058 ATCTCCGATTTGAATGTA----CCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGG 18113
Query 22087 CTTTGTCAGTAAAGCGAAGCCCGCCTGCGCCATCGTCAACACTGCGTTTCGCGAAACTGG 22146
||| || | || | | | ||| ||||| || ||||| | | |||||||| ||
Sbjct 18114 GTTTATCCGAAAGGACAGGTTATGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGG 18173
Query 22147 AGGCGAACACTGGATAGCGATGGCTTGGTATCCGCCAAATAACTCCTTTTACATGTTTGA 22206
|| | || ||||| ||| | |||||| |||| | ||| | ||||||||||||||
Sbjct 18174 CGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCTATATTAAAACATTTTACATGTTTGA 18233
Query 22207 TCCGTTTGGGTTTTCCGACCAGAAACTGAAACAAATTTACGACTTTGAATA 22257
||| || || || || || || | ||||| || ||||| |||| |||||
Sbjct 18234 TCCATTCGGATTCTCGGATCAAGATTTGAAAAAAGTTTACAACTTCGAATA 18284
Score = 188 bits (208), Expect = 2e-43
Identities = 400/593 (67%), Gaps = 12/593 (2%)
Strand=Plus/Plus
Query 15438 GAAGGAAGAAATAGCATCATTTACTCTCAACTTCCTCCTTTGCACGACACTACTAAGATC 15497
|| |||||||||||||| |||| || | | ||| | || ||||| || || || ||
Sbjct 12046 GAGGGAAGAAATAGCATAGTTTATTCACCTTTACCTACGTTACACGATACAACGAAAATT 12105
Query 15498 TATCTTATCGATAACAAGTCTGCAGATATCGCTTCGCTCAATTATCAGAACGACCACAGT 15557
|| ||||||||||||| | | || ||| |||| || |||||||||||||| || |||
Sbjct 12106 TACTTTATCGATAACAAAGCATCCGACATCTCTTCCCTAAATTATCAGAACGATCATAGT 12165
Query 15558 AATTATTTGACTAGTGTGGTTCAAAATAGTGACTTTAGCCCACTGGAAGCTAGCACGC-A 15616
||||| || || |||||||| || |||| || ||||||| ||||| |
Sbjct 12166 TTATATTTAACATCCGTCATTCAAAATCCGGATTTTAATCCCCTGGAAG---GCACGGGA 12222
Query 15617 GACCA--TTAACTTTGATGAGCGGTCTCGTTGGGGCGCTGAGTTCAAAAGCATCCTGCAT 15674
| || | || || ||||| | ||| | ||||| | | | || |||| ||| ||||||
Sbjct 12223 CATCAGATAAAATTAGATGAAAGATCTAGATGGGGTGGTAATTTAAAAACCATTCTGCAT 12282
Query 15675 ATGAATATGCCTAACGTCACCAGTTATATGTTCAGCAACTCGTTCAGGGTGAAAGTGATG 15734
|| || || || | ||| || ||||| || || || || || || || |||
Sbjct 12283 TCAAACATACCAAATATAACCGAGTACATGTTTAGTAATTCTTTTAGAGTTAA---GATA 12339
Query 15735 GCCGCTCTCGAGA---ACGGAGTTGCCACTTACGAGTGGTTCACTCTTTACATACCCGAA 15791
|| ||| | |||| | | || || ||| | ||||| ||||||||||
Sbjct 12340 CCCACTCAAAAAGTTGACGGGCATTTAAGATATGAATGGGTGACTCTAACCATACCCGAA 12399
Query 15792 GGCAATTATTCGGATATGAAGGTGATAGACTTAATGAACAACGCCATTTTAGAAAACTAT 15851
|| |||| |||||| || | ||| ||||| || |||||| | |||||| | | |||
Sbjct 12400 GGAAATTTTTCGGAGATTATGGTTATAGATTTGATGAACGATGCCATTATCTCTCATTAT 12459
Query 15852 CTGTCGGTGGGCAGAAACCGGGGGGTGCCTGAAGATCAAATCGGGGTAAAGATAGACACT 15911
|||| ||||| || || || ||||||| |||| || || ||| | ||||||
Sbjct 12460 TTGTCTAATGGCAGGTTACGCGGTGTTAATGAAGATGAAATAGGTGTTAAGCTGGACACT 12519
Query 15912 AGAAACTTTAGATTAGGTTTTGACCCCGTGAGTGAACTAGTGATGCCGGGTCTTTACACA 15971
||||| |||| | | |||| ||| ||| | | || | ||||| || | || |
Sbjct 12520 AGAAATTTTAAAATGGGTTATGATCCCTATTATAAGTTAATCATGCCCGGCATGTATCTA 12579
Query 15972 TATGAGGCTTTTCATCCGGATGTGGTACTACTCCCAGGCTGTGCCATTGATTT 16024
||||| || |||||||| || ||| | || ||| |||||| ||||||||
Sbjct 12580 TATGAAGCATTTCATCCCGACGTGATCTTAAGTCCACACTGTGCTATTGATTT 12632
Score = 187 bits (206), Expect = 5e-43
Identities = 410/611 (67%), Gaps = 4/611 (1%)
Strand=Plus/Plus
Query 6466 GGGCATGCCTTTAGTAAAGTTGTTAACAAAGCGGCTTATCTGGGATGGATGCATCCTGGG 6525
||| | |||||||||| | | |||| ||| | | ||| ||| | || ||||| ||||
Sbjct 3708 GGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGG 3767
Query 6526 GCTGATGAGATGAAGTTTAGCCTGTATCTTAAGGTTGCTGATATTGCCCCCCAAGTCTTT 6585
||| | | |||| |||||| || || || || || ||||| || | || |||||
Sbjct 3768 GCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTT 3827
Query 6586 TCTGGGGTTCATGTTATGCAGCACCACAAACACGTTATAACCGCTACATCTGGGAAACCT 6645
|| |||||||| ||||| | |||||||||| | || ||||| || |||| | |
Sbjct 3828 TCGCGGGTTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTT 3887
Query 6646 GTCATGTAGTTTTGAAGGAAAGGCATGGAAGAATTTAGCAACCCCCTTGTGTCCGCCTAA 6705
||| ||||||||||||||| || || || ||||| |||| ||| || |||||
Sbjct 3888 TTCAAATAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTTCCCTCCTAA 3947
Query 6706 GTTTTCCATACATTCATCCATAATGATGGCGATAGGTCCCTGGGAAGCCGCGGCTGCAAA 6765
||||||||||| ||||| || || ||||| || ||||| ||||| | ||||
Sbjct 3948 ATTTTCCATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAA 4007
Query 6766 AACATTTTCAGGATGAGCCACGTCGTAATTGTGATCCAAAGTGAGTTCCTCATAAGCCAT 6825
||| | ||||| | | || ||||| | || ||| |||| || | |
Sbjct 4008 TTTATTATTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAG 4067
Query 6826 TTTTACAAAGCGCGG-CATCAGGGATGAGCTTCTG-GGTACTAGAGTCCCATCGGGTCCA 6883
|| | || || || | | | | || |||| || || | |||| |||
Sbjct 4068 TTGCGCGAATCGAGGAGTTAATGTACCAG--TCTGAGGCACAATTTCACCATTCTTTCCC 4125
Query 6884 GGCTCATAATTTCCCTCACAAATTTGGGTCTTCCATGCCGTCATTTCTTGTGGTGGGATC 6943
| ||| |||||||| |||||| | ||||||| | | ||||| ||||| ||||||
Sbjct 4126 ATGTTATAGTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGGGGGGATC 4185
Query 6944 ATGTCCACATGTGGGGCAATAAAAAATACTGTCTCCGGGGCAGGTTTCAGAAGTCCGGAG 7003
||||| ||| |||| | ||| |||| ||||||||||| || || | | | |||
Sbjct 4186 ATGTCTGCATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGAC 4245
Query 7004 GACAGTAAATTTCTCAATAACTGAGATTTACCGCATCCTGTCGGACCGTAGACTACCCCT 7063
|||| | |||||||||||| || ||||| || | || || ||||| || | |||||
Sbjct 4246 GACATAAGATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCA 4305
Query 7064 ATAACGGGCTG 7074
|| || || ||
Sbjct 4306 ATCACCGGTTG 4316
Score = 161 bits (178), Expect = 2e-35
Identities = 261/370 (71%), Gaps = 4/370 (1%)
Strand=Plus/Plus
Query 19256 AAGATGGCCACCCCTTCGATGATGCCGCAATGGTCCTACATGCACATCGCCGGGCAGGAT 19315
||||||||||| || |||||| | ||||||||||| ||| | || ||||| || || |||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 19316 GCATCAGAATACTTATCGCCCGGCATCGTG-CAATTTGCGCAAGCCACGGAAACCTATTT 19374
|| |||||||| ||||| || || | ||| |||||||| || || ||||| || ||
Sbjct 15371 GCTTCAGAATATTTATC-TCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429
Query 19375 CCACCTGGGTAACAAATTTAGAAACCCAACCGTGGCACCCACCCACGACGTGACCACCGA 19434
||| | | ||||||||||| || || || || || || ||||| || || || ||
Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Query 19435 AAGGTCGCAGAAGCTGCAGTTGCGCTTCGTACCGGTGGACAAAGAAGACACGGTCTACAC 19494
||| ||||||| || || || | || || || | ||| |||||||| || || ||
Sbjct 15490 AAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATAC 15549
Query 19495 TTATAAAACGCGGTTTCAGTTGGCCGTTGGAGACAACCGCGTGCTGGACATGGGAAGCAC 19554
|| |||| | || ||||| | |||| || || ||| | | | || |||| || |
Sbjct 15550 TTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAG 15609
Query 19555 TTACTTTGACATCCGCGGGACCCTAGACCGCGGACCCAGCTTCAAGCCTTACAGCGGGAC 19614
||| ||||| || || | ||||| | || ||| || || |||||||| || ||
Sbjct 15610 TTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCAC 15669
Query 19615 -GCAGTACAA 19623
||| |||||
Sbjct 15670 AGCA-TACAA 15678
Score = 147 bits (162), Expect = 5e-31
Identities = 411/625 (66%), Gaps = 18/625 (3%)
Strand=Plus/Plus
Query 8344 TGATCTGAAAAAATCACTGTTTTATTGTCTAATTTGGTGGCGAACGAGCCGTAGAGGGCG 8403
||||| | ||| | | | ||||||| ||||| ||||||| || || ||||| || |||
Sbjct 5577 TGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCG 5636
Query 8404 TTGCTGAGCAGTTTGGCTATGCTACGCA------TGGTCTGAtttttttCGCGGTCGGCT 8457
|| | |||||| || ||||| ||| || | || |||||||| || ||||
Sbjct 5637 TTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTC-CG--CGGC- 5692
Query 8458 TTCTCTTTGGCTCCAATGTTTACTTCCACGTAACGTTTACAAAGGCAAGCCCATTGAGGA 8517
|||||| || | || || | ||||| | | | |||| ||| || |
Sbjct 5693 --CTCTTTTGCCGCTATATTAGTGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCA 5750
Query 8518 AAAACTGTAtttttttCATCTGGGACTATAGAGACAGACCAGCCGCGATTGTGTAATGTC 8577
|| |||||| | ||||||||||| | | ||| || ||||| || || ||
Sbjct 5751 AATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTA 5810
Query 8578 ACGGCGTCAATAGAGGTACACACCTCTCCTCGTAATGATTCATTAGTCCAGACGAGTCTT 8637
| ||| || || || || || || || |||| ||| |||||| |||||| || |
Sbjct 5811 ATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGC 5870
Query 8638 CCACCCTTCCTGCTGCAGAAAGGCGGTAAGACGTCCAAATATTCTTCCGCTGGAGGATCT 8697
|| || || || || || |||||||| || || || |||||||| || || | ||
Sbjct 5871 CCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGCGTCA 5930
Query 8698 GCATCCATCACGAAAATTGCTGGGGGCAGTTCGCTTTCAAAATAGCTTATTTTGGC--CG 8755
||||| || || | ||| || || ||| | ||||||||| |||||| | ||
Sbjct 5931 GCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCACCG 5990
Query 8756 GTTGATTCAGTCGGTTCTGCCACCTGGTCAA-AGCAATTCCACGATCTAAAGGGTTCATG 8814
|||| || ||| || ||| | | ||| | | || || || || |
Sbjct 5991 GTTG---CAAAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATTAAGT 6047
Query 8815 GGGGGACCGGTGGGCATTGGATGAGTCAAAGCACTGGCATACATCCCACAAATATCATAA 8874
|| || || |||||| ||||| || || || ||||||||||| || |||||||||||
Sbjct 6048 GGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCATAA 6107
Query 8875 ACGTAAAGAGGCTGGCTAAGTATTCCCAGGTAAGTGGGGTAACATCTACCTCCTCGGATG 8934
|| |||| ||| | || | || | |||||||||||| || | || |||| ||||
Sbjct 6108 ACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATG 6167
Query 8935 CTCTGTCTGACAAAGTCATACATGT 8959
|| | ||| ||||| ||||| ||||
Sbjct 6168 CTTTCTCTTACAAAATCATAAATGT 6192
Score = 125 bits (138), Expect = 2e-24
Identities = 179/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 16469 CTTTAACGCCCAGGCTGTGTATTCTCAGATGATCCGCGCGTCCACTAACCAGACACACGT 16528
|||||||||||||||||||||||| |||||| | | || ||| || ||||| ||
Sbjct 13074 CTTTAACGCCCAGGCTGTGTATTCGCAGATGTTAGCGGATTCAACTTCGCAAACACATGT 13133
Query 16529 TTTCAACCGATTTCCCAAAAACCAGATTTTGGTTCAGCCGCCTGCGCCGACTATAACCTC 16588
||||| ||||||| | || || || || | | || || || || || || |||
Sbjct 13134 CTTCAATAGATTTCCTGATAATCAAATCTTAATCCGTCCACCAGCTCCCACAATTTGCTC 13193
Query 16589 CATCAGCGAAAACGTCCCAGCTCTGACGGATCACGGGACGCTGCCGATAAAGAACAGCGT 16648
||||||||||||||| ||| || ||||||||||||| || | | ||||||| ||| |
Sbjct 13194 CATCAGCGAAAACGTGCCATCTTTGACGGATCACGGAACAATTTCTTTAAAGAATAGCAT 13253
Query 16649 CTCGGGCGTGCAACGAGTGACGCTGACGGACGCGCGTCGAAGAATCTGTCCTTACGTGTA 16708
| || | || || || | | || ||||| | |||||| ||| ||||| ||
Sbjct 13254 TACTGGGATACAGCGTGTAATTTTAACAGACGCCAGAAGAAGAACGGTTCCATACGTATA 13313
Query 16709 CAAAAGTTTAGG 16720
|||||||||||
Sbjct 13314 TAAAAGTTTAGG 13325
Score = 113 bits (124), Expect = 1e-20
Identities = 250/366 (68%), Gaps = 8/366 (2%)
Strand=Plus/Plus
Query 7756 GTTTCACATTCCACTAGCCAAGTAAGGTCAGGATGAGCCGGATCAAAAACCAGTTTTCCG 7815
|| |||||||| |||| ||| || | | ||||| | | |||||| | | || |
Sbjct 4977 GTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTCATCAAAGATTAAATTATTG 5036
Query 7816 CCGTTCTTCTTTATC-CTGTGCTTACCTTTGGTTTCCATGAGTCTGCGTCCCTCCTCGGT 7874
| ||| ||||||| || |||||||||||||| ||||| ||||| | || || ||
Sbjct 5037 CTGTT-TTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGT 5095
Query 7875 TAGAAAAAGACTGTCCGTGTCACCGTAAACCGATTTGAGCGTGC-GAGATTCTAAGGGGG 7933
| || | |||||| || || ||||||| |||||| | | | | | | | |||| |
Sbjct 5096 CACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCG 5155
Query 7934 TGCCGTAGTCGTCCGCGTACAGAAAAGTAGCCCACTCGGAGATGAAGGCGCGCGTCCACG 7993
| || | || || | || | ||| ||||| ||||| |||| ||||| ||||| |
Sbjct 5156 T-CCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGG 5214
Query 7994 CTAACACAAAAGACGCAATGTGCGACGGGTATCTCTTGTTTTCTATAAGAGGACAAGTCC 8053
| | ||||| ||||| || || || ||||| | || || ||||| | || ||||
Sbjct 5215 CGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTAT 5274
Query 8054 TTTCTAAGGTGTGAAGGCAAATGTCGTCATCATCTACAT--CTAGAAATGTGATTGGCTT 8111
|||||| | |||||||| | || ||| || | || | ||||| |||||||||||
Sbjct 5275 TTTCTATCATTTGAAGGCATAGGTGAGAATCGTC-AGATTGCAAGAAA-GTGATTGGCTT 5332
Query 8112 ATACTT 8117
| ||||
Sbjct 5333 AAACTT 5338
Score = 93.3 bits (102), Expect = 9e-15
Identities = 136/191 (71%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 24886 AACGTGGACATCACACACCTCGTGTCTTACATGGGTCTGTTACACGAAAACAGGTTGGGT 24945
||||| | |||||| | ||| | ||||| | || | | || |||||| | |||||
Sbjct 20824 AACGTAAATATCACAAATCTCATATCTTATTTAGGAATCCTTCATGAAAACCGTCTGGGT 20883
Query 24946 CAATCGGTTCTGCACAACACTCTAAAAGGCGATTCACGCCTAGACTATGTGCGTGACACC 25005
||| ||| | || | ||||| ||| || | | |||| || | ||||| |
Sbjct 20884 CAAAATGTTTTACATGGAAATCTAAGAGGGGAGTATAGATTAGATTACATACGTGATTGC 20943
Query 25006 ATCTATCTATTTTTGATATACACATGGCAGACAGCCATGGGTATCTGGCAGCAATGCCTG 25065
|||| | |||||||| | ||||| ||||| ||||||||||||||||| | |||||| ||
Sbjct 20944 ATCTTTTTATTTTTGGTTTACACTTGGCAAGCAGCCATGGGTATCTGGAATCAATGCTTG 21003
Query 25066 CAAGATGACAA 25076
|||||| ||||
Sbjct 21004 CAAGAT-ACAA 21013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 105684519156632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |