Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_027705.1 Length=33090 Score E Sequences producing significant alignments: (Bits) Value seq4931 480 2e-131 >seq4931 Length=27746 Score = 480 bits (532), Expect = 2e-131 Identities = 1446/2211 (65%), Gaps = 81/2211 (4%) Strand=Plus/Plus Query 20078 GCTCTCGCTCAGCAAGCCGCACCAAACAGACCTAACTACGTGGCCTTCAGAGACAATTTC 20137 || |||||||||||| ||| |||||||| || || || | | || || || || || Sbjct 16124 GCCCTCGCTCAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTT 16183 Query 20138 ATAGGACTGCTTTACTACAACAGCAACGGCAATCTAGGCGTGTTGGCCGGCCAGGCGTCC 20197 || || | | | || ||||| || ||||| | || || || ||||| || |||| Sbjct 16184 ATCGGGTTAATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCA 16243 Query 20198 CAGCTGAACGCCGTAGTGGATTTACAAGACCGCAACACAGAATTGTCCTATCAATTGCTG 20257 ||||| || || || | || | |||||| | || ||||||||||| ||||| | || Sbjct 16244 CAGCTTAATGCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATG 16303 Query 20258 CTCGACAGCTTGGTAGATCGTAACCGTTACTTT-GCTATGTGGAACCAAGCGGTAGACAG 20316 | || | || ||| | | || || | ||| ||||||| ||||| || || Sbjct 16304 TTAGATAATTTACACGATAGAACTCGATATTACAGCT-TGTGGAATCAAGCCGTGGATTC 16362 Query 20317 CTATGATCCAGACGTTCGAATTGTCGAAAATGTGGGAGTAGAGGATGAGATGCCCAACTA 20376 ||||||||||| || ||||| | || ||| | |||||||| || || | || || || Sbjct 16363 ATATGATCCAGAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTA 16422 Query 20377 T-GCTTATCCCCTTTCTGGCATGAA-TCCCACTGCGGCGAAGCCCGTAACAGCTGAA-GG 20433 | |||| ||| | ||||| ||| ||| | || | | || | | | || || Sbjct 16423 TTGCTT-TCCGTTATCTGG-ATGTTCTCCTATTGATTATACTGCTGTTA-ATCAAAATGG 16479 Query 20434 AGCCGCTGTTCCAAACGAAGAAGGGTG----GGTGTC-------CAAGGGGAACCTGGAC 20482 | || | ||| || || || ||| || ||| || || | || Sbjct 16480 ACAAGCAATCAATAAC-AATAACCCTGCGCAGGT-TCTTATAGGCAAAGGAAATGTTGAA 16537 Query 20483 GCTTTGGAGTTGAACATACCCGCTAACCTGTGGAGGGGCTTTCTCTATTCCAACGTGGCT 20542 |||| | |||||| | || |||||||||| | ||||| ||||| || | || Sbjct 16538 TGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCG 16597 Query 20543 ATGTATCTCCCAGATAAGTATAAATTTACGCCGCCTAACACCACCCTGCCCGAAAATGAG 20602 ||||||| || ||||| | |||| || || | || |||| | || || Sbjct 16598 CTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAG 16657 Query 20603 AACACCTATGACTACATGAA----CGGAAAACTTCCAGCCGCTGGTTTAATTGATAGCTA 20658 |||| |||||||| || | ||||||||| ||| | | || || Sbjct 16658 CGGCTATATGCTTACATGAATTCTCGCA----TTCCAGCCGGGGGTCTGGTAGAGGATTA 16713 Query 20659 CGTGAACGTGGGCTCCCGGTGGTCCCTCGATGTGATGGATAATATTAACCCTTTTAATCA 20718 | ||| | || || ||||||| | ||||||||||| | |||| || |||||||| Sbjct 16714 TATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCA 16773 Query 20719 TCACCGCAACGCCGGCCTACGCTACCGATCTCAAATTCTTGGCAACGGAAGATATTGTAA 20778 |||| | || | || | | ||| | ||||| | | || || || | ||| | Sbjct 16774 TCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTC 16833 Query 20779 ATTTCACATTCAAGTTCCCCAGAAATTCTTCGCTATTCGCAACTTGCTTCTGCTTCCGGG 20838 ||||| ||||| ||||| || || || || || || | ||||||||||| ||||| Sbjct 16834 CTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGG 16893 Query 20839 AACATACACGTATGAGTGGTCTTTCCGCAAAGACGTCAACATGATTCTGCAGAGCACCTT 20898 | | |||| || || |||||||| | ||||| || ||||||||| ||||||| || | Sbjct 16894 ATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCT 16953 Query 20899 GGGAAACGATCTTAGAGTAGACGGTGCTTCGATCACGTACGAAAACATCACTCTCTACGC 20958 || || ||||| || | ||||| || || | || | || | ||| | || | || Sbjct 16954 TGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGC 17013 Query 20959 CTCTTTCTTTCCCATGGCCCACAACACAGCTAGCACCCTGGAGGCTATGTTAAGAAACGA 21018 |||||||||| ||| | || ||||| ||| || ||||| ||||| | | || || Sbjct 17014 TACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGA 17073 Query 21019 TACCAACGATCAGTCTTTCATAGATTA-CTTATCGGCGGCTAACATGCTTTACACCATCC 21077 ||||||||||| ||| || || ||| | || | |||||||||||| | || Sbjct 17074 GGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCTAT-T 17131 Query 21078 CCGCCGGGGCCACCCA-AGTTCCCATATCGATCCCATCAAGAAACTGGGCCGCTTTCCGC 21136 || ||| | | | | ||| || || || || ||| |||| || ||||| || || | Sbjct 17132 CCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191 Query 21137 GGGTGGAGTTTCACCCGGATCAAGGCCAAAGAAACCCCAGCGCTAGGTTCGCCCTTCGAT 21196 || ||| || || | | || | ||||| ||| | | || || | || || Sbjct 17192 GGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGAC 17251 Query 21197 CCCTACTTCAACTATAGTGGATCCATTCCCTATCTCGACGGAACCTTCTATCTCAGTCAC 21256 || ||||| | || || || || || ||| || | ||||| ||| | |||| Sbjct 17252 CCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCAC 17311 Query 21257 ACCTTTAGGAGGGTTTCCGTTCAGTTTGACTCCTCCGTCACTTGGCCCGGAAACGACCGT 21316 || | || | ||| || | |||||||| || || || | |||||| ||||| ||| | Sbjct 17312 ACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGA 17371 Query 21317 CTTCTCACTCCTAATGAGTTTGAGATCAAACGCCTTATCGATGGAGAAGGCTATAACGTG 21376 ||| | | |||||||| ||| | || ||| | | || | |||||||||||| Sbjct 17372 CTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACC 17431 Query 21377 TCGCAGAGCAACATGACTAAAGACTGGTTTTTGGTTCAGATGTTGGCCCACTACAACATC 21436 || ||||||| || ||||| || |||| | || |||| ||| | || |||||||| ||| Sbjct 17432 TCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATC 17491 Query 21437 GGGTATCAAGGTTATCACCTACCGGAATCTTACAAAGATAGGTGGTATGGTTTTCTACGA 21496 || || ||||||| ||||||||| | ||| |||||||| | |||| ||| || || Sbjct 17492 GGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGA 17551 Query 21497 AACTTTCAACCGCTCTGTCGTCAGGTGCCTGACCCTCTTCGTTTCACCG---ACTACAAA 21553 || ||| |||| | ||| | || || || || | || || | | || || Sbjct 17552 AATTTTGAACCCATGTGTAGACAAGT---TGTGGATCCTGGTAAGACGGAAAAATATCAA 17608 Query 21554 GCCGTCTCTGTCTTGA--ATCAACACAATAACTCTGGTTTTACGGGCTACAACAGCGCTG 21611 |||| | |||| | |||| || ||||| || ||||||| | ||| || Sbjct 17609 CCCGTTGC--TCTTAAATATCAGCATAATAATTCAGGTTTTA------AAAACCATTATG 17660 Query 21612 GACTCAT---GCGCGAGGGACAACCTTATCCCGCTAACTGGCCTTATCCCCTGATTGGCA 21668 ||| | | ||| | || || ||||||||| ||||||||||| || || || || Sbjct 17661 GACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAG 17720 Query 21669 AAAACGCCGTCGCGAGCGTCACAGAACGCAAGTTCTTGTGCGACAAAACGCTCTGGCGCA 21728 || | || | | | | || | | || || || || |||| ||| || ||| | | Sbjct 17721 AACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGA 17780 Query 21729 TCCCCTTCTCTAGCAATTTCATGTCTATGGGCACTCTGACAGATCTCGGTCAAAACTTGC 21788 | || ||||| ||| || ||||| ||||| || || |||||||| || ||||| |||| Sbjct 17781 TTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGC 17840 Query 21789 TATACGCTAATGCTGCTCACGCCTTGGACATGACCTTCGAAGTGGACCCTATGGAAGAAC 21848 |||| || ||| | ||||| || || |||||||| ||||||| || | ||||| |||| Sbjct 17841 TATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAAC 17900 Query 21849 CAACTCTGTTGTAT-CTCCTGTTTGAAGTGTTCGACGTGGCTAGGGTACATCAACCACAT 21907 ||||| | | || | || |||||||| || ||| || || || ||||| || || Sbjct 17901 CAACT-TATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAA 17959 Query 21908 CGAGGCGTCATAGAAGTGGTCTATTTAAGAACGCCGTTCTCCGCAGGAAACGCAACTACT 21967 ||||| ||||||||||| | ||| ||||||| || || || ||||| ||||| | || Sbjct 17960 CGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACA 18019 Query 21968 TAAACCTCACCCTGTCGCGCAGCTGTCATGGGGAGTACGGAGACAGAACTGAAACGCATT 22027 |||| ||||||| | ||| ||| | ||||| ||| Sbjct 18020 TAAA----------------------TATGGGGACCTCAGAGGACGAAATAAAACGAATT 18057 Query 22028 CTAAGCGATCTCAACGTAACCCCATTACTGCTTGGG-ACCTATGATAAGAGGTTTCCTGG 22086 | |||| | || ||| | || | ||||| ||||||||||| | ||||| || Sbjct 18058 ATCTCCGATTTGAATGTA----CCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGG 18113 Query 22087 CTTTGTCAGTAAAGCGAAGCCCGCCTGCGCCATCGTCAACACTGCGTTTCGCGAAACTGG 22146 ||| || | || | | | ||| ||||| || ||||| | | |||||||| || Sbjct 18114 GTTTATCCGAAAGGACAGGTTATGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGG 18173 Query 22147 AGGCGAACACTGGATAGCGATGGCTTGGTATCCGCCAAATAACTCCTTTTACATGTTTGA 22206 || | || ||||| ||| | |||||| |||| | ||| | |||||||||||||| Sbjct 18174 CGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCTATATTAAAACATTTTACATGTTTGA 18233 Query 22207 TCCGTTTGGGTTTTCCGACCAGAAACTGAAACAAATTTACGACTTTGAATA 22257 ||| || || || || || || | ||||| || ||||| |||| ||||| Sbjct 18234 TCCATTCGGATTCTCGGATCAAGATTTGAAAAAAGTTTACAACTTCGAATA 18284 Score = 188 bits (208), Expect = 2e-43 Identities = 400/593 (67%), Gaps = 12/593 (2%) Strand=Plus/Plus Query 15438 GAAGGAAGAAATAGCATCATTTACTCTCAACTTCCTCCTTTGCACGACACTACTAAGATC 15497 || |||||||||||||| |||| || | | ||| | || ||||| || || || || Sbjct 12046 GAGGGAAGAAATAGCATAGTTTATTCACCTTTACCTACGTTACACGATACAACGAAAATT 12105 Query 15498 TATCTTATCGATAACAAGTCTGCAGATATCGCTTCGCTCAATTATCAGAACGACCACAGT 15557 || ||||||||||||| | | || ||| |||| || |||||||||||||| || ||| Sbjct 12106 TACTTTATCGATAACAAAGCATCCGACATCTCTTCCCTAAATTATCAGAACGATCATAGT 12165 Query 15558 AATTATTTGACTAGTGTGGTTCAAAATAGTGACTTTAGCCCACTGGAAGCTAGCACGC-A 15616 ||||| || || |||||||| || |||| || ||||||| ||||| | Sbjct 12166 TTATATTTAACATCCGTCATTCAAAATCCGGATTTTAATCCCCTGGAAG---GCACGGGA 12222 Query 15617 GACCA--TTAACTTTGATGAGCGGTCTCGTTGGGGCGCTGAGTTCAAAAGCATCCTGCAT 15674 | || | || || ||||| | ||| | ||||| | | | || |||| ||| |||||| Sbjct 12223 CATCAGATAAAATTAGATGAAAGATCTAGATGGGGTGGTAATTTAAAAACCATTCTGCAT 12282 Query 15675 ATGAATATGCCTAACGTCACCAGTTATATGTTCAGCAACTCGTTCAGGGTGAAAGTGATG 15734 || || || || | ||| || ||||| || || || || || || || ||| Sbjct 12283 TCAAACATACCAAATATAACCGAGTACATGTTTAGTAATTCTTTTAGAGTTAA---GATA 12339 Query 15735 GCCGCTCTCGAGA---ACGGAGTTGCCACTTACGAGTGGTTCACTCTTTACATACCCGAA 15791 || ||| | |||| | | || || ||| | ||||| |||||||||| Sbjct 12340 CCCACTCAAAAAGTTGACGGGCATTTAAGATATGAATGGGTGACTCTAACCATACCCGAA 12399 Query 15792 GGCAATTATTCGGATATGAAGGTGATAGACTTAATGAACAACGCCATTTTAGAAAACTAT 15851 || |||| |||||| || | ||| ||||| || |||||| | |||||| | | ||| Sbjct 12400 GGAAATTTTTCGGAGATTATGGTTATAGATTTGATGAACGATGCCATTATCTCTCATTAT 12459 Query 15852 CTGTCGGTGGGCAGAAACCGGGGGGTGCCTGAAGATCAAATCGGGGTAAAGATAGACACT 15911 |||| ||||| || || || ||||||| |||| || || ||| | |||||| Sbjct 12460 TTGTCTAATGGCAGGTTACGCGGTGTTAATGAAGATGAAATAGGTGTTAAGCTGGACACT 12519 Query 15912 AGAAACTTTAGATTAGGTTTTGACCCCGTGAGTGAACTAGTGATGCCGGGTCTTTACACA 15971 ||||| |||| | | |||| ||| ||| | | || | ||||| || | || | Sbjct 12520 AGAAATTTTAAAATGGGTTATGATCCCTATTATAAGTTAATCATGCCCGGCATGTATCTA 12579 Query 15972 TATGAGGCTTTTCATCCGGATGTGGTACTACTCCCAGGCTGTGCCATTGATTT 16024 ||||| || |||||||| || ||| | || ||| |||||| |||||||| Sbjct 12580 TATGAAGCATTTCATCCCGACGTGATCTTAAGTCCACACTGTGCTATTGATTT 12632 Score = 187 bits (206), Expect = 5e-43 Identities = 410/611 (67%), Gaps = 4/611 (1%) Strand=Plus/Plus Query 6466 GGGCATGCCTTTAGTAAAGTTGTTAACAAAGCGGCTTATCTGGGATGGATGCATCCTGGG 6525 ||| | |||||||||| | | |||| ||| | | ||| ||| | || ||||| |||| Sbjct 3708 GGGTAGGCCTTTAGTATAAGTATTAATAAATCTGTTTAGCTGAGCGGGTTGCATTTTGGG 3767 Query 6526 GCTGATGAGATGAAGTTTAGCCTGTATCTTAAGGTTGCTGATATTGCCCCCCAAGTCTTT 6585 ||| | | |||| |||||| || || || || || ||||| || | || ||||| Sbjct 3768 GCTCAGTATATGATATTTAGCTTGAATTTTTAGTGTGGATATATTTCCACTTAAATCTTT 3827 Query 6586 TCTGGGGTTCATGTTATGCAGCACCACAAACACGTTATAACCGCTACATCTGGGAAACCT 6645 || |||||||| ||||| | |||||||||| | || ||||| || |||| | | Sbjct 3828 TCGCGGGTTCATATTATGTAATACCACAAACAGATAGTACCCGCTGCACGAGGGATATTT 3887 Query 6646 GTCATGTAGTTTTGAAGGAAAGGCATGGAAGAATTTAGCAACCCCCTTGTGTCCGCCTAA 6705 ||| ||||||||||||||| || || || ||||| |||| ||| || ||||| Sbjct 3888 TTCAAATAGTTTTGAAGGAAACGCGTGAAAAAATTTTGCAATAGGGCTGTTCCCTCCTAA 3947 Query 6706 GTTTTCCATACATTCATCCATAATGATGGCGATAGGTCCCTGGGAAGCCGCGGCTGCAAA 6765 ||||||||||| ||||| || || ||||| || ||||| ||||| | |||| Sbjct 3948 ATTTTCCATACACTCATCAATGATAATGGCTATGGGTCCGGTTTTGGCCGCCTGTACAAA 4007 Query 6766 AACATTTTCAGGATGAGCCACGTCGTAATTGTGATCCAAAGTGAGTTCCTCATAAGCCAT 6825 ||| | ||||| | | || ||||| | || ||| |||| || | | Sbjct 4008 TTTATTATTTGGATGCCCTAAATCATAATTTTCTTCGTTTAAGAGATCCTTGTACGATAG 4067 Query 6826 TTTTACAAAGCGCGG-CATCAGGGATGAGCTTCTG-GGTACTAGAGTCCCATCGGGTCCA 6883 || | || || || | | | | || |||| || || | |||| ||| Sbjct 4068 TTGCGCGAATCGAGGAGTTAATGTACCAG--TCTGAGGCACAATTTCACCATTCTTTCCC 4125 Query 6884 GGCTCATAATTTCCCTCACAAATTTGGGTCTTCCATGCCGTCATTTCTTGTGGTGGGATC 6943 | ||| |||||||| |||||| | ||||||| | | ||||| ||||| |||||| Sbjct 4126 ATGTTATAGTTTCCCTCTATAATTTGTGCTTTCCATGACATAATTTCCTGTGGGGGGATC 4185 Query 6944 ATGTCCACATGTGGGGCAATAAAAAATACTGTCTCCGGGGCAGGTTTCAGAAGTCCGGAG 7003 ||||| ||| |||| | ||| |||| ||||||||||| || || | | | ||| Sbjct 4186 ATGTCTGCATAAGGGGTTACAAAGAATATAGTCTCCGGGGCGGGATTTAATAATTTGGAC 4245 Query 7004 GACAGTAAATTTCTCAATAACTGAGATTTACCGCATCCTGTCGGACCGTAGACTACCCCT 7063 |||| | |||||||||||| || ||||| || | || || ||||| || | ||||| Sbjct 4246 GACATAAGATTTCTCAATAATTGGGATTTTCCACTACCAGTTGGACCATATATGACCCCA 4305 Query 7064 ATAACGGGCTG 7074 || || || || Sbjct 4306 ATCACCGGTTG 4316 Score = 161 bits (178), Expect = 2e-35 Identities = 261/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 19256 AAGATGGCCACCCCTTCGATGATGCCGCAATGGTCCTACATGCACATCGCCGGGCAGGAT 19315 ||||||||||| || |||||| | ||||||||||| ||| | || ||||| || || ||| Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 19316 GCATCAGAATACTTATCGCCCGGCATCGTG-CAATTTGCGCAAGCCACGGAAACCTATTT 19374 || |||||||| ||||| || || | ||| |||||||| || || ||||| || || Sbjct 15371 GCTTCAGAATATTTATC-TCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 19375 CCACCTGGGTAACAAATTTAGAAACCCAACCGTGGCACCCACCCACGACGTGACCACCGA 19434 ||| | | ||||||||||| || || || || || || ||||| || || || || Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 19435 AAGGTCGCAGAAGCTGCAGTTGCGCTTCGTACCGGTGGACAAAGAAGACACGGTCTACAC 19494 ||| ||||||| || || || | || || || | ||| |||||||| || || || Sbjct 15490 AAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATAC 15549 Query 19495 TTATAAAACGCGGTTTCAGTTGGCCGTTGGAGACAACCGCGTGCTGGACATGGGAAGCAC 19554 || |||| | || ||||| | |||| || || ||| | | | || |||| || | Sbjct 15550 TTTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGTAG 15609 Query 19555 TTACTTTGACATCCGCGGGACCCTAGACCGCGGACCCAGCTTCAAGCCTTACAGCGGGAC 19614 ||| ||||| || || | ||||| | || ||| || || |||||||| || || Sbjct 15610 TTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGCAC 15669 Query 19615 -GCAGTACAA 19623 ||| ||||| Sbjct 15670 AGCA-TACAA 15678 Score = 147 bits (162), Expect = 5e-31 Identities = 411/625 (66%), Gaps = 18/625 (3%) Strand=Plus/Plus Query 8344 TGATCTGAAAAAATCACTGTTTTATTGTCTAATTTGGTGGCGAACGAGCCGTAGAGGGCG 8403 ||||| | ||| | | | ||||||| ||||| ||||||| || || ||||| || ||| Sbjct 5577 TGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCG 5636 Query 8404 TTGCTGAGCAGTTTGGCTATGCTACGCA------TGGTCTGAtttttttCGCGGTCGGCT 8457 || | |||||| || ||||| ||| || | || |||||||| || |||| Sbjct 5637 TTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTC-CG--CGGC- 5692 Query 8458 TTCTCTTTGGCTCCAATGTTTACTTCCACGTAACGTTTACAAAGGCAAGCCCATTGAGGA 8517 |||||| || | || || | ||||| | | | |||| ||| || | Sbjct 5693 --CTCTTTTGCCGCTATATTAGTGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCA 5750 Query 8518 AAAACTGTAtttttttCATCTGGGACTATAGAGACAGACCAGCCGCGATTGTGTAATGTC 8577 || |||||| | ||||||||||| | | ||| || ||||| || || || Sbjct 5751 AATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTA 5810 Query 8578 ACGGCGTCAATAGAGGTACACACCTCTCCTCGTAATGATTCATTAGTCCAGACGAGTCTT 8637 | ||| || || || || || || || |||| ||| |||||| |||||| || | Sbjct 5811 ATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGC 5870 Query 8638 CCACCCTTCCTGCTGCAGAAAGGCGGTAAGACGTCCAAATATTCTTCCGCTGGAGGATCT 8697 || || || || || || |||||||| || || || |||||||| || || | || Sbjct 5871 CCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGCGTCA 5930 Query 8698 GCATCCATCACGAAAATTGCTGGGGGCAGTTCGCTTTCAAAATAGCTTATTTTGGC--CG 8755 ||||| || || | ||| || || ||| | ||||||||| |||||| | || Sbjct 5931 GCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCACCG 5990 Query 8756 GTTGATTCAGTCGGTTCTGCCACCTGGTCAA-AGCAATTCCACGATCTAAAGGGTTCATG 8814 |||| || ||| || ||| | | ||| | | || || || || | Sbjct 5991 GTTG---CAAAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATTAAGT 6047 Query 8815 GGGGGACCGGTGGGCATTGGATGAGTCAAAGCACTGGCATACATCCCACAAATATCATAA 8874 || || || |||||| ||||| || || || ||||||||||| || ||||||||||| Sbjct 6048 GGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCATAA 6107 Query 8875 ACGTAAAGAGGCTGGCTAAGTATTCCCAGGTAAGTGGGGTAACATCTACCTCCTCGGATG 8934 || |||| ||| | || | || | |||||||||||| || | || |||| |||| Sbjct 6108 ACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATG 6167 Query 8935 CTCTGTCTGACAAAGTCATACATGT 8959 || | ||| ||||| ||||| |||| Sbjct 6168 CTTTCTCTTACAAAATCATAAATGT 6192 Score = 125 bits (138), Expect = 2e-24 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 16469 CTTTAACGCCCAGGCTGTGTATTCTCAGATGATCCGCGCGTCCACTAACCAGACACACGT 16528 |||||||||||||||||||||||| |||||| | | || ||| || ||||| || Sbjct 13074 CTTTAACGCCCAGGCTGTGTATTCGCAGATGTTAGCGGATTCAACTTCGCAAACACATGT 13133 Query 16529 TTTCAACCGATTTCCCAAAAACCAGATTTTGGTTCAGCCGCCTGCGCCGACTATAACCTC 16588 ||||| ||||||| | || || || || | | || || || || || || ||| Sbjct 13134 CTTCAATAGATTTCCTGATAATCAAATCTTAATCCGTCCACCAGCTCCCACAATTTGCTC 13193 Query 16589 CATCAGCGAAAACGTCCCAGCTCTGACGGATCACGGGACGCTGCCGATAAAGAACAGCGT 16648 ||||||||||||||| ||| || ||||||||||||| || | | ||||||| ||| | Sbjct 13194 CATCAGCGAAAACGTGCCATCTTTGACGGATCACGGAACAATTTCTTTAAAGAATAGCAT 13253 Query 16649 CTCGGGCGTGCAACGAGTGACGCTGACGGACGCGCGTCGAAGAATCTGTCCTTACGTGTA 16708 | || | || || || | | || ||||| | |||||| ||| ||||| || Sbjct 13254 TACTGGGATACAGCGTGTAATTTTAACAGACGCCAGAAGAAGAACGGTTCCATACGTATA 13313 Query 16709 CAAAAGTTTAGG 16720 ||||||||||| Sbjct 13314 TAAAAGTTTAGG 13325 Score = 113 bits (124), Expect = 1e-20 Identities = 250/366 (68%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 7756 GTTTCACATTCCACTAGCCAAGTAAGGTCAGGATGAGCCGGATCAAAAACCAGTTTTCCG 7815 || |||||||| |||| ||| || | | ||||| | | |||||| | | || | Sbjct 4977 GTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTCATCAAAGATTAAATTATTG 5036 Query 7816 CCGTTCTTCTTTATC-CTGTGCTTACCTTTGGTTTCCATGAGTCTGCGTCCCTCCTCGGT 7874 | ||| ||||||| || |||||||||||||| ||||| ||||| | || || || Sbjct 5037 CTGTT-TTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGT 5095 Query 7875 TAGAAAAAGACTGTCCGTGTCACCGTAAACCGATTTGAGCGTGC-GAGATTCTAAGGGGG 7933 | || | |||||| || || ||||||| |||||| | | | | | | | |||| | Sbjct 5096 CACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCG 5155 Query 7934 TGCCGTAGTCGTCCGCGTACAGAAAAGTAGCCCACTCGGAGATGAAGGCGCGCGTCCACG 7993 | || | || || | || | ||| ||||| ||||| |||| ||||| ||||| | Sbjct 5156 T-CCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGG 5214 Query 7994 CTAACACAAAAGACGCAATGTGCGACGGGTATCTCTTGTTTTCTATAAGAGGACAAGTCC 8053 | | ||||| ||||| || || || ||||| | || || ||||| | || |||| Sbjct 5215 CGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTAT 5274 Query 8054 TTTCTAAGGTGTGAAGGCAAATGTCGTCATCATCTACAT--CTAGAAATGTGATTGGCTT 8111 |||||| | |||||||| | || ||| || | || | ||||| ||||||||||| Sbjct 5275 TTTCTATCATTTGAAGGCATAGGTGAGAATCGTC-AGATTGCAAGAAA-GTGATTGGCTT 5332 Query 8112 ATACTT 8117 | |||| Sbjct 5333 AAACTT 5338 Score = 93.3 bits (102), Expect = 9e-15 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 24886 AACGTGGACATCACACACCTCGTGTCTTACATGGGTCTGTTACACGAAAACAGGTTGGGT 24945 ||||| | |||||| | ||| | ||||| | || | | || |||||| | ||||| Sbjct 20824 AACGTAAATATCACAAATCTCATATCTTATTTAGGAATCCTTCATGAAAACCGTCTGGGT 20883 Query 24946 CAATCGGTTCTGCACAACACTCTAAAAGGCGATTCACGCCTAGACTATGTGCGTGACACC 25005 ||| ||| | || | ||||| ||| || | | |||| || | ||||| | Sbjct 20884 CAAAATGTTTTACATGGAAATCTAAGAGGGGAGTATAGATTAGATTACATACGTGATTGC 20943 Query 25006 ATCTATCTATTTTTGATATACACATGGCAGACAGCCATGGGTATCTGGCAGCAATGCCTG 25065 |||| | |||||||| | ||||| ||||| ||||||||||||||||| | |||||| || Sbjct 20944 ATCTTTTTATTTTTGGTTTACACTTGGCAAGCAGCCATGGGTATCTGGAATCAATGCTTG 21003 Query 25066 CAAGATGACAA 25076 |||||| |||| Sbjct 21004 CAAGAT-ACAA 21013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105684519156632