Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20 109 4e-19 seq25 89.7 4e-13 seq17 89.7 4e-13 seq165 84.2 2e-11 seq47 82.4 6e-11 >seq20 Length=25211774 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | | ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 21310874 CAAGAAGTACAAGTTACTGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 21310815 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||||||||| ||||| || ||||||||||||||| Sbjct 21310814 ATACATTCCGAGATGTACAGTCTCCTGATTGACACGTACATCAAAGAT 21310767 >seq25 Length=23434732 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| || || ||||| || |||| Sbjct 21720553 TGATGGCGCTGCCTCCCTGCCATGCCCTCTGCCAGTTCTATGTGGTGAATGGGGAGCTGT 21720612 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || || || || |||||||| || || || || || ||||| || | Sbjct 21720613 CCTGCCAGCTGTACCAGAGGTCTGGAGACATGGGCCTGGGTGTGCCCTTCAACATTGCCA 21720672 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || |||||||| || |||||||||||| Sbjct 21720673 GCTACGCCCTGCTCACCTACATGATTGCACAC 21720704 >seq17 Length=26966924 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| ||||||||||| ||||| | Sbjct 9459591 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAACTTCTTTGAGA 9459650 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| || ||||| Sbjct 9459651 AACGAGTTTCAGAGTACCAGCG 9459672 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| |||| |||| Sbjct 9440214 GGTTTGTCATTTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAAGCTCAGG 9440273 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 9440274 CATCCTTCTGGACAGCAGAAGAGGT 9440298 >seq165 Length=2883133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 2397856 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 2397915 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||||||||| || | ||||| ||| | Sbjct 2397916 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTTGTCAACCAGTTGCTGTCCAAAATT 2397975 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGG 19691 || |||||| | || ||||| || || | || ||||| Sbjct 2397976 GATGGTGTTGAGCAGCTGAACAACATCCTTGTCATTGG 2398013 >seq47 Length=11806339 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/225 (68%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 47262 TTCTCGGG-TTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGC 47320 |||| ||| || ||||||| || ||||| | | || |||||||||||| | | | Sbjct 787147 TTCTTGGGCTTGGACAATGTGGGCAAAACTACTCTTCTTCACATGCTCAAAGATGACAGA 787088 Query 47321 ATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATA 47380 || ||||| || ||| ||||||| || || ||| |||| ||||||||||| | Sbjct 787087 TTGGGCCAGCATGTTCCAACACTACATCCAACATCAGAAGAACTGACAATTGCTGGAGTG 787028 Query 47381 ACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTAT 47440 || |||| || |||||| | || || || ||||| || | | ||| |||||||| Sbjct 787027 ACGTTTACAACTTTTGATCTTGGTGGGCATGAGCAAGCTTGTCGGGTTTGGAAAAATTAT 786968 Query 47441 TTTCATGTCGTTGATGCTATAGTTTATATTGTAGACTGTGCAGAT 47485 ||| | || ||| || || | | | || |||||| ||||| Sbjct 786967 CTTCCAGCAATTAATGGGATTGTCTTTCTGGTGGACTGTTCAGAT 786923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397140205433965