Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq22 82.4 1e-10 >seq22 Length=17426531 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||||| ||||||||||| | |||| | || || || || Sbjct 1406371 CTCATCTTTGCTAGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATTGTTCC 1406430 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| || || | ||| ||||||| ||| || || || || Sbjct 1406431 CAGATTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGACCATATATGGGGTGCC 1406490 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||||| || || || | | ||| || | ||||| Sbjct 1406491 CGTCTCTGTTTGAGACTCAATAATGGCATACCAAA 1406525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627520208872800