Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq22 87.8 2e-12 >seq22 Length=17426531 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || ||| | |||||||||| ||||| || || ||||| ||| | |||||||| Sbjct 1406523 TGGTATGCCATTATTGAGTCTCAAACAGAGACGGGCACCCCATATATGGTCTACAAAGAT 1406464 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 ||||||| | ||||| || || ||||| |||| ||||| | ||| || ||| Sbjct 1406463 TCCTGTAATCGGAAGAGCAACCAGCAGAATCTGGGAACAATCAAATGCAGCAACCTGTGT 1406404 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 |||||||| | || | ||| |||||||||| Sbjct 1406403 ACAGAAATAGTAGAGTATACTAGCAAAGATGAG 1406371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582785493483320