Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028105.1 Length=35159 Score E Sequences producing significant alignments: (Bits) Value seq4931 462 5e-126 >seq4931 Length=27746 Score = 462 bits (512), Expect = 5e-126 Identities = 1337/2027 (66%), Gaps = 73/2027 (4%) Strand=Plus/Plus Query 18742 TACGCTGAAGACGTAGCTCTTCAAACTCCAGATACTCATATAGTGTTTAAGCCTGATGTT 18801 || || ||||| | | | | ||| ||||||||||||| |||||| || | || | Sbjct 16043 TATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGC--ATCT- 16099 Query 18802 CCCGCAGGCACACAAAACGCTCAAGCTCTGC--TGGCCCAGCAGGCGGCCCCTAACAGAG 18859 |||| |||| |||| ||| || ||| | || ||||| || || ||||| Sbjct 16100 CCCG--GGCATGAAAAAGACTCT--CT-TGCCCTCGCTCAGCAAAGCGCGCCAAACAGGC 16154 Query 18860 CCAACTACATTGGATTTAGAGATAACTTTATTGGGCTTATGTATTACAACAGCACTGGAA 18919 | || || || || ||||| ||||||||||| ||| | |||| ||| ||||| | | | | Sbjct 16155 CAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAATAGCA 16214 Query 18920 ACATGGGAATGCTAGCTGGACAGGCCTCCCAATTAAATGCTGTGGTTGACTTGCAAGACA 18979 | |||| | |||| || || | || || | |||||||| | ||| | ||||||| Sbjct 16215 ATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCAAGACA 16274 Query 18980 GAAACACCGAACTGTCTTACCAGCTCATGTTAGATGCACTGGGAGACCGAAGTCGGTACT 19039 |||| || ||| |||| || ||||| ||||||||| | || ||| ||| || | Sbjct 16275 GAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCGATATT 16334 Query 19040 TTTCCATGTGGAACCAGGCTGTAGACAGCTACGATCCCGATGTAAGAATCATTGAAAACC 19099 | ||||||| || || || || || ||||| || || ||||||| || || Sbjct 16335 ACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGACAATA 16394 Query 19100 ACGGAGTCGAAGACGAGTTGCCTAACTATTGTTTTCCA----CTGGGAGGCATGGCAGTG 19155 ||||| |||||||| | || || ||||| ||||| |||| | | | || Sbjct 16395 TTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATGTTCTCCTATTG 16454 Query 19156 ACAGACACATATACTGCCATAAAATTAAATGGCGATACAAATTGGGCTGCCGACGACACC 19215 | |||||||| | || |||||| |||| || | | | | Sbjct 16455 AT-------TATACTGCTGTTAATCAAAATGG----ACAA--------GCAATCAATAAC 16495 Query 19216 TTTAATAACAGAGTAGAAATTGGTTCAGGCAAC----ATGTT---TGCCATGGAAATTAA 19268 |||||| | | || | |||||| ||||| ||| |||||||| || Sbjct 16496 ---AATAACCCTGCGCAGGTTCTTATAGGCAAAGGAAATGTTGAATGC-ATGGAAATCAA 16551 Query 19269 CCTTCAAGCCAACCTGTGGCGCAGTTTTCTTTATTCCAATATTGGCCTTTATCTTCCTGA 19328 | | |||||||||||| | |||||| ||||| ||||| | || ||||| || || Sbjct 16552 CATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCGA 16611 Query 19329 CAACCTAAAGTACACCCCAGACAACATAACGCTGCCCACCAACCAAAACACGTACGCTTA 19388 ||| | || ||| || | || | |||| | || || ||||| Sbjct 16612 TAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTATATGCTTA 16671 Query 19389 CATGAATGGCCGTGTGACTCCGCCCGG---TCTTATTGACACTTATGTAAACATAGGCGC 19445 ||||||| || | ||| |||| ||| | || |||| | |||||||| | Sbjct 16672 CATGAATTCTCGCAT---TCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAAC 16728 Query 19446 CCGCTGGTCCCCAGACGTGATGGACAATGTTAACCCTTTCAATCACCATCGCAATGCAGG 19505 | | ||||| ||| |||||||||| ||||| || || ||||| || | ||| | || Sbjct 16729 CAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGG 16788 Query 19506 ACTGCGCTATCGGTCCATGTTGCTGGGAAACGGTCGATACG-TGCCTTTCCATATTCAGG 19564 || | || |||| | | | ||||| ||||| || | | |||||| ||||||||| Sbjct 16789 TTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTC-ATATTCAGG 16847 Query 19565 TGCCCCAAAAATTCTTTGCCATTAAAAACCTACTGCTCCTTCCCGGCTCCTACACCTACG 19624 | || ||||| || ||||| |||||| | || || || || || || |||| |||| Sbjct 16848 TTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACG 16907 Query 19625 AATGGAATTTCCGCAAAGACGTGAACATGATCTTGCAGAGTACATTAGGTAACGACCTGA 19684 ||||| ||| | ||||| || |||||||| ||||||||||| | || || || |||| Sbjct 16908 AATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGA 16967 Query 19685 GAGTGGACGGAGCCTCCAT-TCAGTTTACTAGCATTAATCTTTATGCTAACTTTTTTCCT 19743 | | ||||||||| || | || || || ||||||| || | ||||| || ||||| Sbjct 16968 GGGAGGACGGAGCGTCAGTAACATTTGAC-AGCATTAGCCTATTTGCTACTTTCTTTCCG 17026 Query 19744 ATGGCTCACAACACCGCCTCCACTTTGGAGGCCATGCTGCGCAACGACACTAATGACCAG 19803 ||| |||| ||||| || || ||| |||| | ||||| ||||| || ||| || ||| Sbjct 17027 ATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAG 17086 Query 19804 TCTTTCAACGACTACCTGTGCGCGGCCAACATGCTCTACCCCATTC--CCGC--CAACGC 19859 || ||| |||||| || | | | |||||||| || | |||| |||| ||| Sbjct 17087 TCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAA--- 17143 Query 19860 CACCAGTGTGCCCATATCTATTCCGTCCCGCAACTGGGCAGCTTTTAGAGGTTGGAGCTT 19919 || | ||||| || |||||||| | | || ||||| || |||||||||||| || Sbjct 17144 -ACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATT 17202 Query 19920 CACGCGGCTAAAAACCAAGGAAACGCCTGCGTTGGGCTCTGGCTTTGATCCTTATTTTGT 19979 || | |||||| ||||||| || | | ||||||| ||||| || || ||| Sbjct 17203 TACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAG 17262 Query 19980 GTATTCTGGCACTATTCCCTACCTTGATGGCACTTTTTACTTAAATCACACTTTCAAAAA 20039 ||| || ||| | || || || |||| || ||||| ||| ||||||| ||| ||| Sbjct 17263 GTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAA 17322 Query 20040 AGTGTCTATTATGTTTGACTCCTCTGTGAGCTGGCCGGGTAACGACCGCCTTCTCACTCC 20099 ||| | || |||||| || || || || ||||| || || ||| | ||| | | || Sbjct 17323 GGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACC 17382 Query 20100 CAATGAGTTTGAAATTAAACGCTCGGTGGATGGAGAAGGTTACAACGTAGCCCAAAGCAA 20159 ||||| ||| | || ||| | |||||| | ||||| || ||| | || |||| Sbjct 17383 TAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCAT 17442 Query 20160 CATGACCAAGGACTGGTTTTTAGTTCAGATGCTGAGCAACTACAACATTGGTTTTCAGGG 20219 || || ||||| |||| | | |||| ||||| ||||||| || || | || || Sbjct 17443 AATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGG 17502 Query 20220 ATTTTACGTGCCTGAGAACTACAAAGACCGCATGTATTCCTTCTTTAGAAACTTTCAGCC 20279 ||| || | || | || ||||| | |||||||||| || ||||| ||| | || Sbjct 17503 TTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACC 17562 Query 20280 CATGAGCCGTCAGGTTGTGGACACTGTCAACTACGCCAACTACAAAGAAGTAAC-CTTAG 20338 |||| | | || |||||||| ||| || | || || || || | |||| Sbjct 17563 CATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTA- 17621 Query 20339 CCTACCAACATAATAACTCGGGTTTTGTGGGTTA-CATGGCCCCCACTATGCGAGAGGGA 20397 || || |||||||| || |||||| | |||| ||| | |||| | || Sbjct 17622 AATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGG-ACCCTTTGGGCGACAAGGC 17680 Query 20398 CAGGCCTATCCCGCTAACTTTCCATATCCTCTTATTGGAAACGACGCTGTGCCTAACCAA 20457 || | |||||| ||||| || | || || || ||| | | || | | ||||| Sbjct 17681 CATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAG-GTAAAACCA- 17738 Query 20458 CTGACACAGAAAAAGTTCCTCTGCGACCGCATCATGTGGCGCATTCCGTTCTCCAGCAAC 20517 | || |||| ||| || | || ||| | | ||||| | |||||||||||| |||| Sbjct 17739 -TTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAAC 17797 Query 20518 TTCATGTCCATGGGGGCCCTCACCGATCTGGGACAGAACATGTTGTACGCCAACTCGGCG 20577 || ||||||||||| | || || ||||||||||| || || | || || || || || Sbjct 17798 TTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCT 17857 Query 20578 CACGCGCTGGACATGACTTTTGAGGTGGATGCAATGGACGAGCCCACCCTTCTTTATG-T 20636 || || | |||||||| | || || ||| ||||||| || || || || | ||| | Sbjct 17858 CATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC-TCATGAT 17916 Query 20637 TTTGTTCGAAGTTTTCGACGTGGTGC-GCATTCACCAGCCGCACCGCGGCGTCATCGAGG 20695 | || ||||| || ||| | |||| | | || ||||| || || || ||||| || | Sbjct 17917 GCTATTTGAAGTATTTGACAT-GTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAG 17975 Query 20696 CCGTCTACCTGCGCACGCCGTTCTCGGCCGGCAACGCCACCACCTAA 20742 | || || | || || || ||||| || |||||| | || ||| Sbjct 17976 TTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 107 bits (118), Expect = 4e-19 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6480 AGGGATTGAGCGGCGGTCCCCAGGGCATGGGATGGGTAAGGGCCGAGGCATACATGCCGC 6539 ||||||| || || || || ||||||||||||| || | || ||||||||| ||| Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096 Query 6540 AGATGTCGTAGACGTAGAGGGGCTCCTCCAGCACGCCGATGTAAGTGGGGTAGCAGCGGC 6599 | || || || || || | || ||||| | || || ||||||||||||||||| || | Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156 Query 6600 CGCCGCGGATGCTGGCGCGTACGTAATCGTACATCTCGTGCGAGGGGGCCAG 6651 | || | |||||| | | ||| |||| || || ||||| || |||||||| Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAG 6208 Score = 91.5 bits (100), Expect = 3e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 25567 ATCTTTCCTACCCTATACGCTATCTTTCAGCAGAGCCGCGGCCAGCAACACGAACTGAAA 25626 || ||||| || | || ||||||||||| || ||||||| | || ||| ||| Sbjct 22161 ATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAATGTCAACCTAAA 22220 Query 25627 ATAAAAAACCGCACCTTGCGGTCGCTTACCCGAAGCTGCCTGTACCACAGACGCGAGGAT 25686 || ||||| ||||| || | || |||||| ||||| || || |||| | ||| || Sbjct 22221 ATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCACAAAAACGAAGAA 22280 Query 25687 CAGCTACAGCGCACCCTGGAAGACGCCGAGGCTCTGTTCAATAAGTACTG 25736 ||||| ||| | || ||||||||||| ||||| || | || |||| ||| Sbjct 22281 CAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGCTG 22330 Score = 84.2 bits (92), Expect = 5e-12 Identities = 256/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 4065 GGGGTGGTGTTGTAGATAACCCAGTCGTAGGAGGGCTTCTGGGCGTGGTGGTGGAAGATG 4124 ||||||||| |||| | | ||| || || || | | || |||| | ||||| Sbjct 3622 GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATGGTAGGCAAAGATA 3681 Query 4125 TCTTTGAGTAGGAGACTGATGGCCAGGGGGAGGCCCTTAGTGTAGGTGTTCACAAAGCGG 4184 ||||| | || || |||| || | ||| ||||| ||||| || || || | ||| | | Sbjct 3682 TCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTG 3741 Query 4185 TTGAGCTGGGAGGGATGCATGCGTGGGG---AG-ATGAGATGCATCTTGGCCTGGATCTT 4240 || ||||| | ||| ||||| ||||| || || ||| || || || || || || Sbjct 3742 TTTAGCTGAGCGGGTTGCATTT-TGGGGCTCAGTATATGAT--AT-TTAGCTTGAATTTT 3797 Query 4241 AAGGTTGGCGATGTTGCCGCCCAGATCCCGCCGGGGATTCATGTTGTGCAGGACCACCAG 4300 || ||| || || || | | ||| || || ||||| || || | ||||| | Sbjct 3798 TAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAA 3857 Query 4301 GACGGTGTAGCCCGTGCACTTGGGGAACTTGTCGTGTAGTTTGGAGGGAAAGGCGTGAAA 4360 | ||| || ||||| ||| | || || |||||| || ||||| |||||||| Sbjct 3858 CAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAA 3917 Query 4361 AAACTTGGAGACCCCCTTGTGCCCACCCAGGTTTTCCATGCATTCATCCATAATGATGGC 4420 ||| || | | ||| ||| || | |||||||| || ||||| || || ||||| Sbjct 3918 AAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGC 3977 Query 4421 GATGGGGCCCCGGGAGGCCGCCTGAGCAAA 4450 ||||| || ||||||||| |||| Sbjct 3978 TATGGGTCCGGTTTTGGCCGCCTGTACAAA 4007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112300193552586