Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_028105.1
Length=35159
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 462 5e-126
>seq4931
Length=27746
Score = 462 bits (512), Expect = 5e-126
Identities = 1337/2027 (66%), Gaps = 73/2027 (4%)
Strand=Plus/Plus
Query 18742 TACGCTGAAGACGTAGCTCTTCAAACTCCAGATACTCATATAGTGTTTAAGCCTGATGTT 18801
|| || ||||| | | | | ||| ||||||||||||| |||||| || | || |
Sbjct 16043 TATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGC--ATCT- 16099
Query 18802 CCCGCAGGCACACAAAACGCTCAAGCTCTGC--TGGCCCAGCAGGCGGCCCCTAACAGAG 18859
|||| |||| |||| ||| || ||| | || ||||| || || |||||
Sbjct 16100 CCCG--GGCATGAAAAAGACTCT--CT-TGCCCTCGCTCAGCAAAGCGCGCCAAACAGGC 16154
Query 18860 CCAACTACATTGGATTTAGAGATAACTTTATTGGGCTTATGTATTACAACAGCACTGGAA 18919
| || || || || ||||| ||||||||||| ||| | |||| ||| ||||| | | | |
Sbjct 16155 CAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAATAGCA 16214
Query 18920 ACATGGGAATGCTAGCTGGACAGGCCTCCCAATTAAATGCTGTGGTTGACTTGCAAGACA 18979
| |||| | |||| || || | || || | |||||||| | ||| | |||||||
Sbjct 16215 ATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCAAGACA 16274
Query 18980 GAAACACCGAACTGTCTTACCAGCTCATGTTAGATGCACTGGGAGACCGAAGTCGGTACT 19039
|||| || ||| |||| || ||||| ||||||||| | || ||| ||| || |
Sbjct 16275 GAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCGATATT 16334
Query 19040 TTTCCATGTGGAACCAGGCTGTAGACAGCTACGATCCCGATGTAAGAATCATTGAAAACC 19099
| ||||||| || || || || || ||||| || || ||||||| || ||
Sbjct 16335 ACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGACAATA 16394
Query 19100 ACGGAGTCGAAGACGAGTTGCCTAACTATTGTTTTCCA----CTGGGAGGCATGGCAGTG 19155
||||| |||||||| | || || ||||| ||||| |||| | | | ||
Sbjct 16395 TTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATGTTCTCCTATTG 16454
Query 19156 ACAGACACATATACTGCCATAAAATTAAATGGCGATACAAATTGGGCTGCCGACGACACC 19215
| |||||||| | || |||||| |||| || | | | |
Sbjct 16455 AT-------TATACTGCTGTTAATCAAAATGG----ACAA--------GCAATCAATAAC 16495
Query 19216 TTTAATAACAGAGTAGAAATTGGTTCAGGCAAC----ATGTT---TGCCATGGAAATTAA 19268
|||||| | | || | |||||| ||||| ||| |||||||| ||
Sbjct 16496 ---AATAACCCTGCGCAGGTTCTTATAGGCAAAGGAAATGTTGAATGC-ATGGAAATCAA 16551
Query 19269 CCTTCAAGCCAACCTGTGGCGCAGTTTTCTTTATTCCAATATTGGCCTTTATCTTCCTGA 19328
| | |||||||||||| | |||||| ||||| ||||| | || ||||| || ||
Sbjct 16552 CATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCGA 16611
Query 19329 CAACCTAAAGTACACCCCAGACAACATAACGCTGCCCACCAACCAAAACACGTACGCTTA 19388
||| | || ||| || | || | |||| | || || |||||
Sbjct 16612 TAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAGGATCAGCGGCTATATGCTTA 16671
Query 19389 CATGAATGGCCGTGTGACTCCGCCCGG---TCTTATTGACACTTATGTAAACATAGGCGC 19445
||||||| || | ||| |||| ||| | || |||| | |||||||| |
Sbjct 16672 CATGAATTCTCGCAT---TCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAAC 16728
Query 19446 CCGCTGGTCCCCAGACGTGATGGACAATGTTAACCCTTTCAATCACCATCGCAATGCAGG 19505
| | ||||| ||| |||||||||| ||||| || || ||||| || | ||| | ||
Sbjct 16729 CAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGG 16788
Query 19506 ACTGCGCTATCGGTCCATGTTGCTGGGAAACGGTCGATACG-TGCCTTTCCATATTCAGG 19564
|| | || |||| | | | ||||| ||||| || | | |||||| |||||||||
Sbjct 16789 TTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTC-ATATTCAGG 16847
Query 19565 TGCCCCAAAAATTCTTTGCCATTAAAAACCTACTGCTCCTTCCCGGCTCCTACACCTACG 19624
| || ||||| || ||||| |||||| | || || || || || || |||| ||||
Sbjct 16848 TTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACG 16907
Query 19625 AATGGAATTTCCGCAAAGACGTGAACATGATCTTGCAGAGTACATTAGGTAACGACCTGA 19684
||||| ||| | ||||| || |||||||| ||||||||||| | || || || ||||
Sbjct 16908 AATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGA 16967
Query 19685 GAGTGGACGGAGCCTCCAT-TCAGTTTACTAGCATTAATCTTTATGCTAACTTTTTTCCT 19743
| | ||||||||| || | || || || ||||||| || | ||||| || |||||
Sbjct 16968 GGGAGGACGGAGCGTCAGTAACATTTGAC-AGCATTAGCCTATTTGCTACTTTCTTTCCG 17026
Query 19744 ATGGCTCACAACACCGCCTCCACTTTGGAGGCCATGCTGCGCAACGACACTAATGACCAG 19803
||| |||| ||||| || || ||| |||| | ||||| ||||| || ||| || |||
Sbjct 17027 ATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAG 17086
Query 19804 TCTTTCAACGACTACCTGTGCGCGGCCAACATGCTCTACCCCATTC--CCGC--CAACGC 19859
|| ||| |||||| || | | | |||||||| || | |||| |||| |||
Sbjct 17087 TCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAA--- 17143
Query 19860 CACCAGTGTGCCCATATCTATTCCGTCCCGCAACTGGGCAGCTTTTAGAGGTTGGAGCTT 19919
|| | ||||| || |||||||| | | || ||||| || |||||||||||| ||
Sbjct 17144 -ACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATT 17202
Query 19920 CACGCGGCTAAAAACCAAGGAAACGCCTGCGTTGGGCTCTGGCTTTGATCCTTATTTTGT 19979
|| | |||||| ||||||| || | | ||||||| ||||| || || |||
Sbjct 17203 TACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAG 17262
Query 19980 GTATTCTGGCACTATTCCCTACCTTGATGGCACTTTTTACTTAAATCACACTTTCAAAAA 20039
||| || ||| | || || || |||| || ||||| ||| ||||||| ||| |||
Sbjct 17263 GTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAA 17322
Query 20040 AGTGTCTATTATGTTTGACTCCTCTGTGAGCTGGCCGGGTAACGACCGCCTTCTCACTCC 20099
||| | || |||||| || || || || ||||| || || ||| | ||| | | ||
Sbjct 17323 GGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACC 17382
Query 20100 CAATGAGTTTGAAATTAAACGCTCGGTGGATGGAGAAGGTTACAACGTAGCCCAAAGCAA 20159
||||| ||| | || ||| | |||||| | ||||| || ||| | || ||||
Sbjct 17383 TAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCAT 17442
Query 20160 CATGACCAAGGACTGGTTTTTAGTTCAGATGCTGAGCAACTACAACATTGGTTTTCAGGG 20219
|| || ||||| |||| | | |||| ||||| ||||||| || || | || ||
Sbjct 17443 AATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGG 17502
Query 20220 ATTTTACGTGCCTGAGAACTACAAAGACCGCATGTATTCCTTCTTTAGAAACTTTCAGCC 20279
||| || | || | || ||||| | |||||||||| || ||||| ||| | ||
Sbjct 17503 TTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACC 17562
Query 20280 CATGAGCCGTCAGGTTGTGGACACTGTCAACTACGCCAACTACAAAGAAGTAAC-CTTAG 20338
|||| | | || |||||||| ||| || | || || || || | ||||
Sbjct 17563 CATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTA- 17621
Query 20339 CCTACCAACATAATAACTCGGGTTTTGTGGGTTA-CATGGCCCCCACTATGCGAGAGGGA 20397
|| || |||||||| || |||||| | |||| ||| | |||| | ||
Sbjct 17622 AATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGG-ACCCTTTGGGCGACAAGGC 17680
Query 20398 CAGGCCTATCCCGCTAACTTTCCATATCCTCTTATTGGAAACGACGCTGTGCCTAACCAA 20457
|| | |||||| ||||| || | || || || ||| | | || | | |||||
Sbjct 17681 CATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAG-GTAAAACCA- 17738
Query 20458 CTGACACAGAAAAAGTTCCTCTGCGACCGCATCATGTGGCGCATTCCGTTCTCCAGCAAC 20517
| || |||| ||| || | || ||| | | ||||| | |||||||||||| ||||
Sbjct 17739 -TTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAAC 17797
Query 20518 TTCATGTCCATGGGGGCCCTCACCGATCTGGGACAGAACATGTTGTACGCCAACTCGGCG 20577
|| ||||||||||| | || || ||||||||||| || || | || || || || ||
Sbjct 17798 TTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCT 17857
Query 20578 CACGCGCTGGACATGACTTTTGAGGTGGATGCAATGGACGAGCCCACCCTTCTTTATG-T 20636
|| || | |||||||| | || || ||| ||||||| || || || || | ||| |
Sbjct 17858 CATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC-TCATGAT 17916
Query 20637 TTTGTTCGAAGTTTTCGACGTGGTGC-GCATTCACCAGCCGCACCGCGGCGTCATCGAGG 20695
| || ||||| || ||| | |||| | | || ||||| || || || ||||| || |
Sbjct 17917 GCTATTTGAAGTATTTGACAT-GTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAG 17975
Query 20696 CCGTCTACCTGCGCACGCCGTTCTCGGCCGGCAACGCCACCACCTAA 20742
| || || | || || || ||||| || |||||| | || |||
Sbjct 17976 TTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022
Score = 107 bits (118), Expect = 4e-19
Identities = 127/172 (74%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 6480 AGGGATTGAGCGGCGGTCCCCAGGGCATGGGATGGGTAAGGGCCGAGGCATACATGCCGC 6539
||||||| || || || || ||||||||||||| || | || ||||||||| |||
Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096
Query 6540 AGATGTCGTAGACGTAGAGGGGCTCCTCCAGCACGCCGATGTAAGTGGGGTAGCAGCGGC 6599
| || || || || || | || ||||| | || || ||||||||||||||||| || |
Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156
Query 6600 CGCCGCGGATGCTGGCGCGTACGTAATCGTACATCTCGTGCGAGGGGGCCAG 6651
| || | |||||| | | ||| |||| || || ||||| || ||||||||
Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAG 6208
Score = 91.5 bits (100), Expect = 3e-14
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 25567 ATCTTTCCTACCCTATACGCTATCTTTCAGCAGAGCCGCGGCCAGCAACACGAACTGAAA 25626
|| ||||| || | || ||||||||||| || ||||||| | || ||| |||
Sbjct 22161 ATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAATGTCAACCTAAA 22220
Query 25627 ATAAAAAACCGCACCTTGCGGTCGCTTACCCGAAGCTGCCTGTACCACAGACGCGAGGAT 25686
|| ||||| ||||| || | || |||||| ||||| || || |||| | ||| ||
Sbjct 22221 ATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCACAAAAACGAAGAA 22280
Query 25687 CAGCTACAGCGCACCCTGGAAGACGCCGAGGCTCTGTTCAATAAGTACTG 25736
||||| ||| | || ||||||||||| ||||| || | || |||| |||
Sbjct 22281 CAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCTACTGAACAAGTGCTG 22330
Score = 84.2 bits (92), Expect = 5e-12
Identities = 256/390 (66%), Gaps = 8/390 (2%)
Strand=Plus/Plus
Query 4065 GGGGTGGTGTTGTAGATAACCCAGTCGTAGGAGGGCTTCTGGGCGTGGTGGTGGAAGATG 4124
||||||||| |||| | | ||| || || || | | || |||| | |||||
Sbjct 3622 GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATGGTAGGCAAAGATA 3681
Query 4125 TCTTTGAGTAGGAGACTGATGGCCAGGGGGAGGCCCTTAGTGTAGGTGTTCACAAAGCGG 4184
||||| | || || |||| || | ||| ||||| ||||| || || || | ||| | |
Sbjct 3682 TCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTG 3741
Query 4185 TTGAGCTGGGAGGGATGCATGCGTGGGG---AG-ATGAGATGCATCTTGGCCTGGATCTT 4240
|| ||||| | ||| ||||| ||||| || || ||| || || || || || ||
Sbjct 3742 TTTAGCTGAGCGGGTTGCATTT-TGGGGCTCAGTATATGAT--AT-TTAGCTTGAATTTT 3797
Query 4241 AAGGTTGGCGATGTTGCCGCCCAGATCCCGCCGGGGATTCATGTTGTGCAGGACCACCAG 4300
|| ||| || || || | | ||| || || ||||| || || | ||||| |
Sbjct 3798 TAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAA 3857
Query 4301 GACGGTGTAGCCCGTGCACTTGGGGAACTTGTCGTGTAGTTTGGAGGGAAAGGCGTGAAA 4360
| ||| || ||||| ||| | || || |||||| || ||||| ||||||||
Sbjct 3858 CAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAA 3917
Query 4361 AAACTTGGAGACCCCCTTGTGCCCACCCAGGTTTTCCATGCATTCATCCATAATGATGGC 4420
||| || | | ||| ||| || | |||||||| || ||||| || || |||||
Sbjct 3918 AAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGC 3977
Query 4421 GATGGGGCCCCGGGAGGCCGCCTGAGCAAA 4450
||||| || ||||||||| ||||
Sbjct 3978 TATGGGTCCGGTTTTGGCCGCCTGTACAAA 4007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 112300193552586
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