Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq4931 457 2e-124 >seq4931 Length=27746 Score = 457 bits (506), Expect = 2e-124 Identities = 1145/1730 (66%), Gaps = 34/1730 (2%) Strand=Plus/Plus Query 19011 GATGGATAACGTTAACCCCTTTAACCATCACCGCAACGCGGGTTTGCGCTATCGCTCTAT 19070 |||||| | ||||| || ||||| |||||| | || | |||||| | || | ||| Sbjct 16747 GATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCA 16806 Query 19071 GCTACTGGGCAACGGCCGCTACGTTCCTTTTCACATACAAGTGCCCNNNNNNNNNNNNGC 19130 |||| | || || || ||||| | | | ||||| || || || || || Sbjct 16807 GCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGC 16866 Query 19131 CATTAAAAACCTGCTGCTCCTTCCGGGCTCCTACACCTACGAGTGGAATTTTAGGAAGGA 19190 |||||| |||| || || ||||| || |||| ||||| ||| |||||| || || Sbjct 16867 ACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGA 16926 Query 19191 TGTAAACATGATTTTGCAGAGCACACTTGGTAACGACCTACGGGTTGACGGGGCGAGCGT 19250 ||||||||||||||||||||| || ||||| || || || ||| ||||| ||| || Sbjct 16927 TGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGT 16986 Query 19251 TAGGTTTGATAGCATCAACCTGTACGCAAATTTTTTCCCCATGGCGCATAACACAGCGTC 19310 | ||||| ||||| | ||| | || | ||| || || ||| | |||||||| || || Sbjct 16987 AACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTC 17046 Query 19311 CACGCTGGAAGCCATGCTGCGTAATGACACAAACGACCAGTCTTTTAACGACTACCTCTG 19370 || |||||| | ||||| || ||||| ||||| ||||| || |||||| || | Sbjct 17047 TACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC 17106 Query 19371 CGCCGCCAACATGCTTTACCCTATTCCGGCCAATGCCACTAGTGTTCCAATTTCCATTCC 19430 | || ||||||||||| ||||||| | || || | || || || || ||||| Sbjct 17107 CAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCC 17166 Query 19431 CTCTCGCAATTGGGCAGCTTTCCGCGGCTGGAGCTTCACGCGACTTAAAACTCGGGAAAC 19490 | | |||||||| || || | || ||| || || |||| ||| | |||||| Sbjct 17167 AGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAAC 17226 Query 19491 GCCTTCCCTTGGATCTGGATTTGACCCTTACTTTGTGTACTCCGGTTCCATCCCCTACCT 19550 || || |||| |||| ||||||||| |||||| |||||| || || ||||| || Sbjct 17227 ACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTG 17286 Query 19551 GGATGGCACCTTTTATCTAAACCATACTTTTAAAAAGGTGTCCATTATGTTCGACTCCTC 19610 ||||| ||||||||| || || ||| | | ||||||| |||| ||| || || || Sbjct 17287 GGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTC 17346 Query 19611 AGTAAGCTGGCCTGGCAACGACCGCCTCCTGACTCCTAATGAATTCGAGATTAAGCGGTC 19670 |||||| |||||||| || ||| | || | | ||||||||||| | || || | Sbjct 17347 AGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGA 17406 Query 19671 GGTGGACGGAGAAGGCTACAACGTGGCCCAAAGCAATATGACAAAAGATTGGTTTTTAAT 19730 |||||||| |||||||| ||| | || |||| || || || ||||||| | | || Sbjct 17407 GGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGAT 17466 Query 19731 TCAAATGTTAAGTCACTACAACATCGGTTATCAGGGATTCTACGTTCCAGAATCCTACAA 19790 ||||||| | ||||||||| ||||| || || || || || | || | || || Sbjct 17467 TCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAA 17526 Query 19791 GGACAGAATGTACTCTTTTTTCAGAAACTTCCAACCTATGAGCCGACAGGTGGTGGATCC 19850 || ||| |||| || ||||| ||||| || |||| ||| | |||| || |||||||| Sbjct 17527 AGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCC 17586 Query 19851 TGTAAATTACACAAACTACAAGGAAGTTACATTGCCGTATCAGCATAATAATTCAGGCTT 19910 || || ||| || | ||| | | |||||||||||||||||||| || Sbjct 17587 TGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTT 17646 Query 19911 TGTGGGGTA-CATGGGTCCTACCATGAGAGAGGGTCAGGCCTACCCAGCTAACTACCCTT 19969 | | |||| ||| | || | || || | || || ||||| |||| Sbjct 17647 TAAAAACCATTATGGACCCT-TTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTT 17705 Query 19970 ACCCGCTAATAGGCAAAACGGCAGTACCCAGCCTCACCCAGAAAAAGTTCCTGTGCGACA 20029 |||||| || || || ||||| | | | || |||| ||| || | || |||| Sbjct 17706 TCCCGCTCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACA 17765 Query 20030 GGGTGATGTGGAGAATTCCCTTTTCTAGCAACTTTATGTCTATGGGGGCTCTGACCGACC 20089 | ||||||| ||||| || || |||||||||||| ||||| | || || || | Sbjct 17766 GAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATC 17825 Query 20090 TGGGGCAGAACATGCTGTATGCCAACTCCGCTCATGCCTTGGACATGACTTTTGAGGTGG 20149 |||| || || |||| ||||| || || |||||||| || |||||||| | || || | Sbjct 17826 TGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAG 17885 Query 20150 ATCCCATGGATGAGCCCACGCTTCTTTATG-TTTTGTTCGAAGTCTTCGACGTGGTGC-G 20207 || | ||||| || || || || | ||| | | || ||||| || ||| | |||| | Sbjct 17886 ATTCAATGGAGGAACCAACTTATC-TCATGATGCTATTTGAAGTATTTGACAT-GTGCAG 17943 Query 20208 CATTCACCAGCCGCACCGCGGCGTCATCGAGGCCGTCTACCTGCGCACGCCTTTCTCTGC 20267 | || ||||| || || || ||||| || | | || || | || || || || || Sbjct 17944 AGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGC 18003 Query 20268 CGGCAACGCCACCACCTAAGAAGCTGATGGGCTCCAGCGAACAGGAGCTGCGGAGCATTG 20327 || |||||| | || ||| ||||| || || | || | | ||| Sbjct 18004 AGGTAACGCCGCAACATAA-----ATATGGGGACCTCAGAGGACGAAATAAAACGAATTA 18058 Query 20328 TTCGCGATCTGGGCTGCGGACCTTATTTTCTGGGCACTTTCGACAAACGCTTCCCAGGCT 20387 | |||| || | ||||| |||| |||| || | || |||||||| || || | Sbjct 18059 TCTCCGATTTG---AATGTACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGT 18115 Query 20388 TTATGGCCCCCCAAAAGCCGG-----CCTGTGCCATCGTTAACACAGCCGGG---CGGGA 20439 |||| || ||| | | | ||||||||| || |||| ||||| || || Sbjct 18116 TTAT-----CCGAAAGGACAGGTTATGCTGTGCCATTGTAAACA---CCGGGCTTCGCGA 18167 Query 20440 AACCGGGGGAGTGCACTGGTTAGCTTTTGCCTGGAATCCGCAGAATCGAACGTGCTACCT 20499 | || || || || ||| | || ||||| |||||||| | | | ||| | ||| | Sbjct 18168 AGAGGGCGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCTATATTAAAACATTTTACAT 18227 Query 20500 GTTTGACCCTTTTGGTTTTTCAGACGAAAGACTGAAACAGATTTACCAGTTTCAGTACGA 20559 |||||| || || || || || || || ||||| | ||||| | || | || || Sbjct 18228 GTTTGATCCATTCGGATTCTCGGATCAAGATTTGAAAAAAGTTTACAACTTCGAATATGA 18287 Query 20560 AGGCCTGCTCAAACGCAGCGCCCTGGCCTCTACTCCTGACCACTGCGTTACGGTGGTAAA 20619 | || | || |||||| | ||| || | | || ||||| || ||| Sbjct 18288 GCGAATGTTAGAAAACAGCGCAGTATTCTCCACAAAAACCAAATGTGTTACTGTCATAAG 18347 Query 20620 ATCCATCCAAACCGTTCAGGGACC--ACTTTCGGCGGCCTGCGGGCTTTTTTGTTGTATG 20677 | ||| | || ||| | || || | ||| | |||||| || ||||||||| | Sbjct 18348 CAGCTGTCAATCGGTGCAGAGTCCCTACAAT-GGCTG-CTGCGGTCTGTTTTGTTGTGTC 18405 Query 20678 TTTTTGCATGCCTTTGTTCACTGGCCTCACTCGCCTATGGACAAAAACCC 20727 |||||| | |||||| | | ||||| | |||||||| || ||||| Sbjct 18406 TTTTTGAAAGCCTTTACTATGTATCCTCATTATCCTATGGATAAGAACCC 18455 Score = 140 bits (154), Expect = 7e-29 Identities = 205/290 (71%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 18397 GCTCCGAACAGACCAAATTACATTGGTTTTCGAGATAACTTTATAGGCCTAATGTATTAC 18456 || || ||||| |||||||| || |||||| | ||||||||||| || |||||| ||| Sbjct 16142 GCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTAT 16201 Query 18457 AACTCCACTGGAAATATGGGGGTTCTGGCCGGACAGGCTTCGCAATTAAACGCAGTGGTT 18516 ||| | | | ||| |||| || | ||||| || | || || | || || || | Sbjct 16202 AACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATC 16261 Query 18517 GATTTGCAAGACAGAAACACAGAATTGTCATACCAACTTATGCTGGATGCCCTGGGAGAC 18576 || | ||||||||||| |||||||||||||| || |||||| | ||| | || Sbjct 16262 GACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGAT 16321 Query 18577 CGCAGTAGGTACTTCTCCATGTGGAATCAGGCTGTGGACAGCTATGATCCTGATGTTAGG 18636 | | | | || | | | |||||||||| || ||||| |||||||| || || | Sbjct 16322 AGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGA 16381 Query 18637 ATAATAGAAAACCATGGCGTAGAAGACGAATTGCCTAACTACTGCTTTCC 18686 || ||||| || ||| |||||||||||| | || || || |||||||| Sbjct 16382 ATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Score = 132 bits (146), Expect = 1e-26 Identities = 216/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 3825 AAGATGTCTTTCAGAAGCAAGCTAATAGCTAAGGGAAGGCCTTTGGTGTAGGTGTTGACA 3884 ||||| ||||| | | | | | || |||||||| |||||||| || || || || | | Sbjct 3676 AAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATA 3735 Query 3885 AAGCGATTAAGCTGTGAGGGATGCATGCGAGGGGAGATGATGTGCATCTTAGCCTGGATC 3944 || | || ||||| | ||| ||||| ||| | || || ||||| || || Sbjct 3736 AATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATT 3795 Query 3945 TTAAGGTTAGCAATATTGCCCCCCAGGTCTCTGCGAGGATTCATGTTATGCAACACCACC 4004 || || | | ||||| || | | ||| | || || ||||| ||||| || ||||| Sbjct 3796 TTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACA 3855 Query 4005 AACACGGTGTACCCGGTGCATTTGGGGAACTTGTCATGTAGCTTTGAAGGAAAGGCGTGA 4064 |||| ||||||| |||| ||| | || ||| ||| ||||||||||| |||||| Sbjct 3856 AACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGA 3915 Query 4065 AAGAATTTGGAAACCCCTTTGTGCCCTCCTAGGTTTTCCATGCATTCGTCCATAATAATG 4124 || ||||| | || ||| |||||||| |||||||| || || || || |||||| Sbjct 3916 AAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATG 3975 Query 4125 GCAATGGGTCC 4135 || |||||||| Sbjct 3976 GCTATGGGTCC 3986 Score = 116 bits (128), Expect = 8e-22 Identities = 251/371 (68%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 17485 AAGATGGCCACCCCATCGATGATGCCGCAGTGGTCTTACATGCACATCGCCGGGCAGGAC 17544 ||||||||||| || |||||| | ||||| ||||||||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 17545 GCCTCGGAGTACCTGAGCCCCGGCCTCGTG-CAGTTTGCCCGCGCCACCGACACCTACTT 17603 || || || || | | | || || | ||| || ||||| |||| ||||| || ||||| Sbjct 15371 GCTTCAGAATATTT-ATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 17604 CAGCTTGGGAAACAAGTTTAGAAACCCCACCGTGGCCCCCACGCACGATGTGACCACGGA 17663 | | | | || |||||||| || || || || || || |||||||| || ||||| Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 17664 CCGCTCGCAGAGACTGACCCTGCGCTTTGTGCCCGTAGACCGGGAGG--ACACCGCTTAC 17721 | ||||||||||| | | ||||| || | || || | |||| | ||| Sbjct 15490 AAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATAC 15549 Query 17722 TCGTACAAAGTGCGCTTCACCCTAGCAGTAGGGGACAACCGTGTGTTGGACATGGCCAGT 17781 | | |||| || || || | || || || ||| | | || || ||| ||| Sbjct 15550 T--TTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607 Query 17782 ACCTATTTTGACATCCGGGGCACGCTAGACCGCGGTCCCAGCTTCAAGCCTTATTCTGGC 17841 | |||||||| || ||| | | ||||| | |||||| || || ||||| |||| Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667 Query 17842 ACAGCTTACAA 17852 ||||| ||||| Sbjct 15668 ACAGCATACAA 15678 Score = 104 bits (114), Expect = 5e-18 Identities = 210/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 5192 ttttttttAATTCGCTTCTTACCTCGGGTTTCCATGAGTCTGTGTCCTGCTTCGGTCACA 5251 |||| ||||| || | ||||||| ||| ||||| ||||| || |||| ||| ||||| Sbjct 5040 TTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGTCACG 5099 Query 5252 AAAAGACTGTCGGTGTCCCCGTAGACCGATTTGAGCTCTCTGTGTTCCAGAGGAGTGCCG 5311 || | |||||| || || ||||| | |||||| | |||| | ||| ||| || Sbjct 5100 AACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCGTCCC 5159 Query 5312 CGGTCCTCGTCGTACAAAAACTGAGACCACTCTGAGACGAAAGCTCTGGTCCACGCTAAT 5371 | || || || ||||| | | ||| || || |||||| | |||||| || | Sbjct 5160 CAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGGCGAGA 5219 Query 5372 ACAAATGAAGCTATCTGCGAGGGGTATCTGTCATTTTCAATGAGAGGGTCAACCTTTTGT 5431 |||||||| || || || || ||||| | || ||| || || | ||| | |||| | Sbjct 5220 ACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTATTTTCT 5279 Query 5432 AAGGTGTGGAGACAGAGGTCGTCCTCTTCCGCGTCCATAAAGGTGATTGGCTTATAGGTG 5491 | | || || || |||| || || | | || || |||||||||||| | | Sbjct 5280 ATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAGTGATTGGCTTAAACTTA 5339 Query 5492 TAAGTCACGTGA 5503 || ||||||||| Sbjct 5340 TATGTCACGTGA 5351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108798906233316