Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_028107.1
Length=34064
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 457 2e-124
>seq4931
Length=27746
Score = 457 bits (506), Expect = 2e-124
Identities = 1145/1730 (66%), Gaps = 34/1730 (2%)
Strand=Plus/Plus
Query 19011 GATGGATAACGTTAACCCCTTTAACCATCACCGCAACGCGGGTTTGCGCTATCGCTCTAT 19070
|||||| | ||||| || ||||| |||||| | || | |||||| | || | |||
Sbjct 16747 GATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCA 16806
Query 19071 GCTACTGGGCAACGGCCGCTACGTTCCTTTTCACATACAAGTGCCCNNNNNNNNNNNNGC 19130
|||| | || || || ||||| | | | ||||| || || || || ||
Sbjct 16807 GCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGC 16866
Query 19131 CATTAAAAACCTGCTGCTCCTTCCGGGCTCCTACACCTACGAGTGGAATTTTAGGAAGGA 19190
|||||| |||| || || ||||| || |||| ||||| ||| |||||| || ||
Sbjct 16867 ACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGA 16926
Query 19191 TGTAAACATGATTTTGCAGAGCACACTTGGTAACGACCTACGGGTTGACGGGGCGAGCGT 19250
||||||||||||||||||||| || ||||| || || || ||| ||||| ||| ||
Sbjct 16927 TGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGT 16986
Query 19251 TAGGTTTGATAGCATCAACCTGTACGCAAATTTTTTCCCCATGGCGCATAACACAGCGTC 19310
| ||||| ||||| | ||| | || | ||| || || ||| | |||||||| || ||
Sbjct 16987 AACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTC 17046
Query 19311 CACGCTGGAAGCCATGCTGCGTAATGACACAAACGACCAGTCTTTTAACGACTACCTCTG 19370
|| |||||| | ||||| || ||||| ||||| ||||| || |||||| || |
Sbjct 17047 TACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC 17106
Query 19371 CGCCGCCAACATGCTTTACCCTATTCCGGCCAATGCCACTAGTGTTCCAATTTCCATTCC 19430
| || ||||||||||| ||||||| | || || | || || || || |||||
Sbjct 17107 CAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCC 17166
Query 19431 CTCTCGCAATTGGGCAGCTTTCCGCGGCTGGAGCTTCACGCGACTTAAAACTCGGGAAAC 19490
| | |||||||| || || | || ||| || || |||| ||| | ||||||
Sbjct 17167 AGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAGGAAAC 17226
Query 19491 GCCTTCCCTTGGATCTGGATTTGACCCTTACTTTGTGTACTCCGGTTCCATCCCCTACCT 19550
|| || |||| |||| ||||||||| |||||| |||||| || || ||||| ||
Sbjct 17227 ACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTG 17286
Query 19551 GGATGGCACCTTTTATCTAAACCATACTTTTAAAAAGGTGTCCATTATGTTCGACTCCTC 19610
||||| ||||||||| || || ||| | | ||||||| |||| ||| || || ||
Sbjct 17287 GGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTC 17346
Query 19611 AGTAAGCTGGCCTGGCAACGACCGCCTCCTGACTCCTAATGAATTCGAGATTAAGCGGTC 19670
|||||| |||||||| || ||| | || | | ||||||||||| | || || |
Sbjct 17347 AGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGA 17406
Query 19671 GGTGGACGGAGAAGGCTACAACGTGGCCCAAAGCAATATGACAAAAGATTGGTTTTTAAT 19730
|||||||| |||||||| ||| | || |||| || || || ||||||| | | ||
Sbjct 17407 GGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGAT 17466
Query 19731 TCAAATGTTAAGTCACTACAACATCGGTTATCAGGGATTCTACGTTCCAGAATCCTACAA 19790
||||||| | ||||||||| ||||| || || || || || | || | || ||
Sbjct 17467 TCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAA 17526
Query 19791 GGACAGAATGTACTCTTTTTTCAGAAACTTCCAACCTATGAGCCGACAGGTGGTGGATCC 19850
|| ||| |||| || ||||| ||||| || |||| ||| | |||| || ||||||||
Sbjct 17527 AGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCC 17586
Query 19851 TGTAAATTACACAAACTACAAGGAAGTTACATTGCCGTATCAGCATAATAATTCAGGCTT 19910
|| || ||| || | ||| | | |||||||||||||||||||| ||
Sbjct 17587 TGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTT 17646
Query 19911 TGTGGGGTA-CATGGGTCCTACCATGAGAGAGGGTCAGGCCTACCCAGCTAACTACCCTT 19969
| | |||| ||| | || | || || | || || ||||| ||||
Sbjct 17647 TAAAAACCATTATGGACCCT-TTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTT 17705
Query 19970 ACCCGCTAATAGGCAAAACGGCAGTACCCAGCCTCACCCAGAAAAAGTTCCTGTGCGACA 20029
|||||| || || || ||||| | | | || |||| ||| || | || ||||
Sbjct 17706 TCCCGCTCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACA 17765
Query 20030 GGGTGATGTGGAGAATTCCCTTTTCTAGCAACTTTATGTCTATGGGGGCTCTGACCGACC 20089
| ||||||| ||||| || || |||||||||||| ||||| | || || || |
Sbjct 17766 GAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATC 17825
Query 20090 TGGGGCAGAACATGCTGTATGCCAACTCCGCTCATGCCTTGGACATGACTTTTGAGGTGG 20149
|||| || || |||| ||||| || || |||||||| || |||||||| | || || |
Sbjct 17826 TGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAG 17885
Query 20150 ATCCCATGGATGAGCCCACGCTTCTTTATG-TTTTGTTCGAAGTCTTCGACGTGGTGC-G 20207
|| | ||||| || || || || | ||| | | || ||||| || ||| | |||| |
Sbjct 17886 ATTCAATGGAGGAACCAACTTATC-TCATGATGCTATTTGAAGTATTTGACAT-GTGCAG 17943
Query 20208 CATTCACCAGCCGCACCGCGGCGTCATCGAGGCCGTCTACCTGCGCACGCCTTTCTCTGC 20267
| || ||||| || || || ||||| || | | || || | || || || || ||
Sbjct 17944 AGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGC 18003
Query 20268 CGGCAACGCCACCACCTAAGAAGCTGATGGGCTCCAGCGAACAGGAGCTGCGGAGCATTG 20327
|| |||||| | || ||| ||||| || || | || | | |||
Sbjct 18004 AGGTAACGCCGCAACATAA-----ATATGGGGACCTCAGAGGACGAAATAAAACGAATTA 18058
Query 20328 TTCGCGATCTGGGCTGCGGACCTTATTTTCTGGGCACTTTCGACAAACGCTTCCCAGGCT 20387
| |||| || | ||||| |||| |||| || | || |||||||| || || |
Sbjct 18059 TCTCCGATTTG---AATGTACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGT 18115
Query 20388 TTATGGCCCCCCAAAAGCCGG-----CCTGTGCCATCGTTAACACAGCCGGG---CGGGA 20439
|||| || ||| | | | ||||||||| || |||| ||||| || ||
Sbjct 18116 TTAT-----CCGAAAGGACAGGTTATGCTGTGCCATTGTAAACA---CCGGGCTTCGCGA 18167
Query 20440 AACCGGGGGAGTGCACTGGTTAGCTTTTGCCTGGAATCCGCAGAATCGAACGTGCTACCT 20499
| || || || || ||| | || ||||| |||||||| | | | ||| | ||| |
Sbjct 18168 AGAGGGCGGTGTCCATTGGATTGCGTTTGCTTGGAATCCCTATATTAAAACATTTTACAT 18227
Query 20500 GTTTGACCCTTTTGGTTTTTCAGACGAAAGACTGAAACAGATTTACCAGTTTCAGTACGA 20559
|||||| || || || || || || || ||||| | ||||| | || | || ||
Sbjct 18228 GTTTGATCCATTCGGATTCTCGGATCAAGATTTGAAAAAAGTTTACAACTTCGAATATGA 18287
Query 20560 AGGCCTGCTCAAACGCAGCGCCCTGGCCTCTACTCCTGACCACTGCGTTACGGTGGTAAA 20619
| || | || |||||| | ||| || | | || ||||| || |||
Sbjct 18288 GCGAATGTTAGAAAACAGCGCAGTATTCTCCACAAAAACCAAATGTGTTACTGTCATAAG 18347
Query 20620 ATCCATCCAAACCGTTCAGGGACC--ACTTTCGGCGGCCTGCGGGCTTTTTTGTTGTATG 20677
| ||| | || ||| | || || | ||| | |||||| || ||||||||| |
Sbjct 18348 CAGCTGTCAATCGGTGCAGAGTCCCTACAAT-GGCTG-CTGCGGTCTGTTTTGTTGTGTC 18405
Query 20678 TTTTTGCATGCCTTTGTTCACTGGCCTCACTCGCCTATGGACAAAAACCC 20727
|||||| | |||||| | | ||||| | |||||||| || |||||
Sbjct 18406 TTTTTGAAAGCCTTTACTATGTATCCTCATTATCCTATGGATAAGAACCC 18455
Score = 140 bits (154), Expect = 7e-29
Identities = 205/290 (71%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 18397 GCTCCGAACAGACCAAATTACATTGGTTTTCGAGATAACTTTATAGGCCTAATGTATTAC 18456
|| || ||||| |||||||| || |||||| | ||||||||||| || |||||| |||
Sbjct 16142 GCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTAT 16201
Query 18457 AACTCCACTGGAAATATGGGGGTTCTGGCCGGACAGGCTTCGCAATTAAACGCAGTGGTT 18516
||| | | | ||| |||| || | ||||| || | || || | || || || |
Sbjct 16202 AACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATC 16261
Query 18517 GATTTGCAAGACAGAAACACAGAATTGTCATACCAACTTATGCTGGATGCCCTGGGAGAC 18576
|| | ||||||||||| |||||||||||||| || |||||| | ||| | ||
Sbjct 16262 GACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGAT 16321
Query 18577 CGCAGTAGGTACTTCTCCATGTGGAATCAGGCTGTGGACAGCTATGATCCTGATGTTAGG 18636
| | | | || | | | |||||||||| || ||||| |||||||| || || |
Sbjct 16322 AGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGA 16381
Query 18637 ATAATAGAAAACCATGGCGTAGAAGACGAATTGCCTAACTACTGCTTTCC 18686
|| ||||| || ||| |||||||||||| | || || || ||||||||
Sbjct 16382 ATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431
Score = 132 bits (146), Expect = 1e-26
Identities = 216/311 (69%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 3825 AAGATGTCTTTCAGAAGCAAGCTAATAGCTAAGGGAAGGCCTTTGGTGTAGGTGTTGACA 3884
||||| ||||| | | | | | || |||||||| |||||||| || || || || | |
Sbjct 3676 AAGATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATA 3735
Query 3885 AAGCGATTAAGCTGTGAGGGATGCATGCGAGGGGAGATGATGTGCATCTTAGCCTGGATC 3944
|| | || ||||| | ||| ||||| ||| | || || ||||| || ||
Sbjct 3736 AATCTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATT 3795
Query 3945 TTAAGGTTAGCAATATTGCCCCCCAGGTCTCTGCGAGGATTCATGTTATGCAACACCACC 4004
|| || | | ||||| || | | ||| | || || ||||| ||||| || |||||
Sbjct 3796 TTTAGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACA 3855
Query 4005 AACACGGTGTACCCGGTGCATTTGGGGAACTTGTCATGTAGCTTTGAAGGAAAGGCGTGA 4064
|||| ||||||| |||| ||| | || ||| ||| ||||||||||| ||||||
Sbjct 3856 AACAGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGA 3915
Query 4065 AAGAATTTGGAAACCCCTTTGTGCCCTCCTAGGTTTTCCATGCATTCGTCCATAATAATG 4124
|| ||||| | || ||| |||||||| |||||||| || || || || ||||||
Sbjct 3916 AAAAATTTTGCAATAGGGCTGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATG 3975
Query 4125 GCAATGGGTCC 4135
|| ||||||||
Sbjct 3976 GCTATGGGTCC 3986
Score = 116 bits (128), Expect = 8e-22
Identities = 251/371 (68%), Gaps = 6/371 (2%)
Strand=Plus/Plus
Query 17485 AAGATGGCCACCCCATCGATGATGCCGCAGTGGTCTTACATGCACATCGCCGGGCAGGAC 17544
||||||||||| || |||||| | ||||| ||||||||| | || ||||| || || ||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 17545 GCCTCGGAGTACCTGAGCCCCGGCCTCGTG-CAGTTTGCCCGCGCCACCGACACCTACTT 17603
|| || || || | | | || || | ||| || ||||| |||| ||||| || |||||
Sbjct 15371 GCTTCAGAATATTT-ATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429
Query 17604 CAGCTTGGGAAACAAGTTTAGAAACCCCACCGTGGCCCCCACGCACGATGTGACCACGGA 17663
| | | | || |||||||| || || || || || || |||||||| || |||||
Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Query 17664 CCGCTCGCAGAGACTGACCCTGCGCTTTGTGCCCGTAGACCGGGAGG--ACACCGCTTAC 17721
| ||||||||||| | | ||||| || | || || | |||| | |||
Sbjct 15490 AAGATCGCAGAGACTACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATAC 15549
Query 17722 TCGTACAAAGTGCGCTTCACCCTAGCAGTAGGGGACAACCGTGTGTTGGACATGGCCAGT 17781
| | |||| || || || | || || || ||| | | || || ||| |||
Sbjct 15550 T--TTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAGT 15607
Query 17782 ACCTATTTTGACATCCGGGGCACGCTAGACCGCGGTCCCAGCTTCAAGCCTTATTCTGGC 17841
| |||||||| || ||| | | ||||| | |||||| || || ||||| ||||
Sbjct 15608 AGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGGC 15667
Query 17842 ACAGCTTACAA 17852
||||| |||||
Sbjct 15668 ACAGCATACAA 15678
Score = 104 bits (114), Expect = 5e-18
Identities = 210/312 (67%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 5192 ttttttttAATTCGCTTCTTACCTCGGGTTTCCATGAGTCTGTGTCCTGCTTCGGTCACA 5251
|||| ||||| || | ||||||| ||| ||||| ||||| || |||| ||| |||||
Sbjct 5040 TTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGTCACG 5099
Query 5252 AAAAGACTGTCGGTGTCCCCGTAGACCGATTTGAGCTCTCTGTGTTCCAGAGGAGTGCCG 5311
|| | |||||| || || ||||| | |||||| | |||| | ||| ||| ||
Sbjct 5100 AACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCGTCCC 5159
Query 5312 CGGTCCTCGTCGTACAAAAACTGAGACCACTCTGAGACGAAAGCTCTGGTCCACGCTAAT 5371
| || || || ||||| | | ||| || || |||||| | |||||| || |
Sbjct 5160 CAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGGCGAGA 5219
Query 5372 ACAAATGAAGCTATCTGCGAGGGGTATCTGTCATTTTCAATGAGAGGGTCAACCTTTTGT 5431
|||||||| || || || || ||||| | || ||| || || | ||| | |||| |
Sbjct 5220 ACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTATTTTCT 5279
Query 5432 AAGGTGTGGAGACAGAGGTCGTCCTCTTCCGCGTCCATAAAGGTGATTGGCTTATAGGTG 5491
| | || || || |||| || || | | || || |||||||||||| | |
Sbjct 5280 ATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAGTGATTGGCTTAAACTTA 5339
Query 5492 TAAGTCACGTGA 5503
|| |||||||||
Sbjct 5340 TATGTCACGTGA 5351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 108798906233316
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