Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq66 156 5e-33 seq147 152 6e-32 seq91 134 2e-26 seq36 129 7e-25 seq1 123 3e-23 seq84 122 1e-22 seq61 111 2e-19 seq74 93.3 5e-14 seq48 91.5 2e-13 seq8 91.5 2e-13 seq148 89.7 6e-13 seq18 87.8 2e-12 seq20 82.4 9e-11 >seq66 Length=5789316 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | || Sbjct 2649668 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2649727 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||||||| || ||||||||||| || ||||| || |||||| Sbjct 2649728 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2649787 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| |||||||| | ||||| || Sbjct 2649788 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649847 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| |||||||| || || || Sbjct 2649848 ATCCAGAAGGAGTCCACTCTGCACCTGGT 2649876 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || |||||||| || || | ||||| ||| | | Sbjct 2649439 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 2649498 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || |||||||||||||| || || || || || Sbjct 2649499 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCA 2649558 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || ||||| || || |||| |||||||| | ||||| || Sbjct 2649559 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 2649618 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || | ||||| || ||||| Sbjct 2649619 CATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTCTCCGAGGTGG 2649666 >seq147 Length=2532799 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| ||||| || ||||| ||| | || Sbjct 2383949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 2384008 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||||| || || ||||| || ||||| || ||||| |||||| Sbjct 2384009 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 2384068 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || || || | ||||| || Sbjct 2384069 CAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2384128 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || || | ||||| | ||||| Sbjct 2384129 ATCCAGAAAGAGTCCACCCTGCACCTGGTTCTCCGTCTCAGGGGTGG 2384175 >seq91 Length=4965619 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || ||||| || || || || || || ||||||| | Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| ||||| ||||| | || || ||| Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||||||||| || || |||| | || || | ||||| || Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||||||||||||||| ||| | ||||| ||||| Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTCGGGGTGG 1585549 >seq36 Length=17049061 Score = 129 bits (142), Expect = 7e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| | ||||| || ||||||||||| |||| || ||||| ||| | Sbjct 7363036 AATGCAGATCTTCATGAAGACCCTGACCGGCAAGACCATTATCCTGGAGGTGGAGCCCAT 7362977 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| || ||||||| || || ||||| || ||||| |||||||| ||||| Sbjct 7362976 TGATACCATTGAGAAAGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCA 7362917 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || ||||| | || |||| | || || | ||||| || Sbjct 7362916 GCAGAGGCTGATCTTCGCAGGCAAGCAGGTGGAAGATGGCCACACTCTTTCTGACTACAA 7362857 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || || || |||| ||| || | ||||| Sbjct 7362856 CATCCAGAAAGAGTCTACCCTTCGTCTGGTTCTCCGTCT 7362818 >seq1 Length=68039765 Score = 123 bits (136), Expect = 3e-23 Identities = 157/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || |||||||| || |||| || ||||| | ||||||| || | Sbjct 38753445 ATCATGCAGATTTTTGTCAAAACCCTTAGGGG-AAGACCGCCATGCTTGAGGCGGAACCC 38753503 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| | |||| | |||| || |||||||| ||||| ||||||||||| || Sbjct 38753504 TGAGATACTACACAAAATGTAAAGGTCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 38753563 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| | || || |||| ||||||||| || || ||| |||||| | | ||||| Sbjct 38753564 CAGCAAAGACTGATCTTTGATGGTAAGCAGCTGGAAAATGGACGTACCTGATCTGACTAC 38753623 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 || | |||||||| ||||||||||||||||| || Sbjct 38753624 AACATGCAAAAGGAGTCCACTCTTCATCTAGTGTT 38753658 >seq84 Length=7487594 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | || || |||| || ||||| || || || || | || | ||||| | Sbjct 757644 ATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGAACCCTCG 757585 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 757584 GATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 757525 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| |||||||||||||| || | |||| |||| || | || | || Sbjct 757524 CAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGATGGATGTACTTTATCTGATTGCAAC 757465 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||||||||||||||| ||| | ||| | ||||| Sbjct 757464 ATTCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTTGGGGTGG 757418 >seq61 Length=10587387 Score = 111 bits (122), Expect = 2e-19 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || || ||||| ||||| ||||||||||| || |||||| || | Sbjct 1945227 AATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGTG--ACC 1945170 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||||||||| || || |||| |||| || | ||||| || | |||||||| Sbjct 1945169 TTTGCTGGTAAGCAGCTGGAAGATGGATGTACTTTATCTGACTACAACATTCAAAAGGAG 1945110 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||||||||| ||| | ||||| ||||| Sbjct 1945109 CCCACTTTTCATCTAGAATTGAGACTTCGGGGTGG 1945075 >seq74 Length=6199102 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||| | |||| || ||||| || || || || |||||| | Sbjct 2523206 ATGCAGATTTTCAGCAAAATCCTTATAGGGAAGACCATCACACTGGAAGTTGAGCCCTTG 2523147 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | | ||| || || | || ||||| ||||||||| | || ||| Sbjct 2523146 GATACTATAGAAAATGTAATGGCCAAGATCCGGGCTAAGGAAGGAATTCCTTCTGATCAG 2523087 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| ||||||| || || |||| |||| || | ||||| | Sbjct 2523086 CAAAGCCTGATCTTTGCAGGTAAGCGGCTGGAAGATGGATGTACTTTA-CTGACTACAGC 2523028 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||| ||||||||||| | ||| ||| Sbjct 2523027 ATTCAAAAGGAGTCCACTCTTCACCCAGTGTTG 2522995 >seq48 Length=16082888 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||| || || || ||||| ||| | || Sbjct 15914162 ATGCAGATCTTTGTGAAGACCCTGACTAGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 15914221 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| ||| | ||||| || || |||||||||||||| || || | |||||| Sbjct 15914222 GACACCATCTAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCGCTGACCAG 15914281 Query 27526 CAGCGTCTAATTTTT 27540 ||| | || || ||| Sbjct 15914282 CAGAGGCTGATGTTT 15914296 >seq8 Length=36468567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/227 (70%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGG 27464 ||||| || ||| |||| || |||| || |||| || || || ||||||| || | Sbjct 5938883 ATGCATAT-TTTATCAAAACCCTTATGGGGAAGAGCATCACACTCCAGGTTGAACTCCTG 5938825 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| || || |||| ||| | |||||| |||| || || Sbjct 5938824 -GATACCATAGAAAATGTAAAGGCCAAGATCCAGGGTAAGAAAGGAATTTCTCCTGATCA 5938766 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | ||| |||||||||||||| || |||| | || || | ||||| || Sbjct 5938765 GAAAA----AAT----GCTGGTAAGCAACTGGAAGATGGACATATTTTATCTGACTACAA 5938714 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | |||||| | || ||| |||||||||| ||| | |||| |||| Sbjct 5938713 CATTCAAAAGTAGTCTACTGTTCATCTAGTGTTGAGACTTCATGGTG 5938667 >seq148 Length=5416653 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACT-CTTGAGGTTGAGTCAGG 27464 ||||| || |||||||| || ||||| || || || || | || || ||||| | Sbjct 991264 ATGCAGATTTTTGTCAAAACCCTTACGGGGAAAACCATCATAACTCGAAGTTGAACCCTC 991205 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | |||| | ||||| || || ||||| ||||| |||||||| || || || Sbjct 991204 AGATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCA 991145 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 ||| | || || |||||||||||||| || || ||| |||| Sbjct 991144 GCAAAGACTGATCTTTGCTGGTAAGCAGCTGGAATATGGACGTA 991101 >seq18 Length=20386103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 |||| |||| || |||||||| || ||||| | || || |||||||||||||| || | Sbjct 5141411 AGGATGAGGAAGGCATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAGCAGCTGG 5141470 Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCT 27616 ||||| |||| || | | ||| || | |||||||| ||||||||||||| | | Sbjct 5141471 GAGATGAATGTACTTTATCTGTCTACAACATTCAAAAGGACTCCACTCTTCATCAACTAA 5141530 Query 27617 TGCGTCTTCGCGGTGG 27632 || | |||| ||||| Sbjct 5141531 TGAGACTTCAAGGTGG 5141546 >seq20 Length=25211774 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784 ||| |||||| ||||| ||||| ||||||||||| || ||| || || |||||||| Sbjct 21308602 AGCCTTTGCCGCGGTGGAGGGAATCTTCTTTTCTGGTTCTTTCGCGTCGATATTCTGGCT 21308543 Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 || ||||| || || ||||| || || ||||||| || ||||| || Sbjct 21308542 GAAGAAGCGAGGACTTATGCCTGGCCTCACGTTTTCCAATGAGCTTAT 21308495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569845646926160