Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq66 156 5e-33
seq147 152 6e-32
seq91 134 2e-26
seq36 129 7e-25
seq1 123 3e-23
seq84 122 1e-22
seq61 111 2e-19
seq74 93.3 5e-14
seq48 91.5 2e-13
seq8 91.5 2e-13
seq148 89.7 6e-13
seq18 87.8 2e-12
seq20 82.4 9e-11
>seq66
Length=5789316
Score = 156 bits (172), Expect = 5e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | ||
Sbjct 2649668 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2649727
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | |||||||| || ||||||||||| || ||||| || ||||||
Sbjct 2649728 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2649787
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || || |||| |||||||| | ||||| ||
Sbjct 2649788 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649847
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|||| ||||| |||||||| || || ||
Sbjct 2649848 ATCCAGAAGGAGTCCACTCTGCACCTGGT 2649876
Score = 154 bits (170), Expect = 2e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || || |||||||| || || | ||||| ||| | |
Sbjct 2649439 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 2649498
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | ||| | ||||| || || |||||||||||||| || || || || ||
Sbjct 2649499 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCA 2649558
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | || ||||| || ||||| || || |||| |||||||| | ||||| ||
Sbjct 2649559 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 2649618
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| || || || | ||||| || |||||
Sbjct 2649619 CATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTCTCCGAGGTGG 2649666
>seq147
Length=2532799
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || ||||||||||| ||||| || ||||| ||| | ||
Sbjct 2383949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 2384008
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| ||||||| || || ||||| || ||||| || ||||| ||||||
Sbjct 2384009 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 2384068
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || || || ||||| || || |||| || || || | ||||| ||
Sbjct 2384069 CAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2384128
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || || || || | ||||| | |||||
Sbjct 2384129 ATCCAGAAAGAGTCCACCCTGCACCTGGTTCTCCGTCTCAGGGGTGG 2384175
>seq91
Length=4965619
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || | || || ||||| || || || || || || ||||||| |
Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| | ||||| || || ||||| ||||| ||||| | || || |||
Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||||||||| || || |||| | || || | ||||| ||
Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||||||||||||||| ||| | ||||| |||||
Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTCGGGGTGG 1585549
>seq36
Length=17049061
Score = 129 bits (142), Expect = 7e-25
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| | ||||| || ||||||||||| |||| || ||||| ||| |
Sbjct 7363036 AATGCAGATCTTCATGAAGACCCTGACCGGCAAGACCATTATCCTGGAGGTGGAGCCCAT 7362977
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||||| || ||||||| || || ||||| || ||||| |||||||| |||||
Sbjct 7362976 TGATACCATTGAGAAAGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCA 7362917
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || || || || ||||| | || |||| | || || | ||||| ||
Sbjct 7362916 GCAGAGGCTGATCTTCGCAGGCAAGCAGGTGGAAGATGGCCACACTCTTTCTGACTACAA 7362857
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| || || || || |||| ||| || | |||||
Sbjct 7362856 CATCCAGAAAGAGTCTACCCTTCGTCTGGTTCTCCGTCT 7362818
>seq1
Length=68039765
Score = 123 bits (136), Expect = 3e-23
Identities = 157/215 (73%), Gaps = 1/215 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| || |||||||| || |||| || ||||| | ||||||| || |
Sbjct 38753445 ATCATGCAGATTTTTGTCAAAACCCTTAGGGG-AAGACCGCCATGCTTGAGGCGGAACCC 38753503
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
| |||| | |||| | |||| || |||||||| ||||| ||||||||||| ||
Sbjct 38753504 TGAGATACTACACAAAATGTAAAGGTCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 38753563
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||| | || || |||| ||||||||| || || ||| |||||| | | |||||
Sbjct 38753564 CAGCAAAGACTGATCTTTGATGGTAAGCAGCTGGAAAATGGACGTACCTGATCTGACTAC 38753623
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617
|| | |||||||| ||||||||||||||||| ||
Sbjct 38753624 AACATGCAAAAGGAGTCCACTCTTCATCTAGTGTT 38753658
>seq84
Length=7487594
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||| | || || |||| || ||||| || || || || | || | ||||| |
Sbjct 757644 ATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGAACCCTCG 757585
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| | ||||| || || ||||| ||||| ||||||||||| || |||
Sbjct 757584 GATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 757525
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | |||| |||||||||||||| || | |||| |||| || | || | ||
Sbjct 757524 CAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGATGGATGTACTTTATCTGATTGCAAC 757465
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||||||||||||||| ||| | ||| | |||||
Sbjct 757464 ATTCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTTGGGGTGG 757418
>seq61
Length=10587387
Score = 111 bits (122), Expect = 2e-19
Identities = 118/155 (76%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||||| || || ||||| ||||| ||||||||||| || |||||| || |
Sbjct 1945227 AATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGTG--ACC 1945170
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||||||||| || || |||| |||| || | ||||| || | ||||||||
Sbjct 1945169 TTTGCTGGTAAGCAGCTGGAAGATGGATGTACTTTATCTGACTACAACATTCAAAAGGAG 1945110
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||||||||| ||| | ||||| |||||
Sbjct 1945109 CCCACTTTTCATCTAGAATTGAGACTTCGGGGTGG 1945075
>seq74
Length=6199102
Score = 93.3 bits (102), Expect = 5e-14
Identities = 149/213 (70%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || ||| | |||| || ||||| || || || || |||||| |
Sbjct 2523206 ATGCAGATTTTCAGCAAAATCCTTATAGGGAAGACCATCACACTGGAAGTTGAGCCCTTG 2523147
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| | | ||| || || | || ||||| ||||||||| | || |||
Sbjct 2523146 GATACTATAGAAAATGTAATGGCCAAGATCCGGGCTAAGGAAGGAATTCCTTCTGATCAG 2523087
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || ||||| ||||||| || || |||| |||| || | ||||| |
Sbjct 2523086 CAAAGCCTGATCTTTGCAGGTAAGCGGCTGGAAGATGGATGTACTTTA-CTGACTACAGC 2523028
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| |||||||| ||||||||||| | ||| |||
Sbjct 2523027 ATTCAAAAGGAGTCCACTCTTCACCCAGTGTTG 2522995
>seq48
Length=16082888
Score = 91.5 bits (100), Expect = 2e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || ||||||| || || || ||||| ||| | ||
Sbjct 15914162 ATGCAGATCTTTGTGAAGACCCTGACTAGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 15914221
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| ||| | ||||| || || |||||||||||||| || || | ||||||
Sbjct 15914222 GACACCATCTAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCGCTGACCAG 15914281
Query 27526 CAGCGTCTAATTTTT 27540
||| | || || |||
Sbjct 15914282 CAGAGGCTGATGTTT 15914296
>seq8
Length=36468567
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/227 (70%), Gaps = 11/227 (5%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGG 27464
||||| || ||| |||| || |||| || |||| || || || ||||||| || |
Sbjct 5938883 ATGCATAT-TTTATCAAAACCCTTATGGGGAAGAGCATCACACTCCAGGTTGAACTCCTG 5938825
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | |||| | ||||| || || |||| ||| | |||||| |||| || ||
Sbjct 5938824 -GATACCATAGAAAATGTAAAGGCCAAGATCCAGGGTAAGAAAGGAATTTCTCCTGATCA 5938766
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
| | ||| |||||||||||||| || |||| | || || | ||||| ||
Sbjct 5938765 GAAAA----AAT----GCTGGTAAGCAACTGGAAGATGGACATATTTTATCTGACTACAA 5938714
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631
| |||||| | || ||| |||||||||| ||| | |||| ||||
Sbjct 5938713 CATTCAAAAGTAGTCTACTGTTCATCTAGTGTTGAGACTTCATGGTG 5938667
>seq148
Length=5416653
Score = 89.7 bits (98), Expect = 6e-13
Identities = 119/164 (73%), Gaps = 1/164 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACT-CTTGAGGTTGAGTCAGG 27464
||||| || |||||||| || ||||| || || || || | || || ||||| |
Sbjct 991264 ATGCAGATTTTTGTCAAAACCCTTACGGGGAAAACCATCATAACTCGAAGTTGAACCCTC 991205
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| || | |||| | ||||| || || ||||| ||||| |||||||| || || ||
Sbjct 991204 AGATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGATCA 991145
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568
||| | || || |||||||||||||| || || ||| ||||
Sbjct 991144 GCAAAGACTGATCTTTGCTGGTAAGCAGCTGGAATATGGACGTA 991101
>seq18
Length=20386103
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556
|||| |||| || |||||||| || ||||| | || || |||||||||||||| || |
Sbjct 5141411 AGGATGAGGAAGGCATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAGCAGCTGG 5141470
Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCT 27616
||||| |||| || | | ||| || | |||||||| ||||||||||||| | |
Sbjct 5141471 GAGATGAATGTACTTTATCTGTCTACAACATTCAAAAGGACTCCACTCTTCATCAACTAA 5141530
Query 27617 TGCGTCTTCGCGGTGG 27632
|| | |||| |||||
Sbjct 5141531 TGAGACTTCAAGGTGG 5141546
>seq20
Length=25211774
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784
||| |||||| ||||| ||||| ||||||||||| || ||| || || ||||||||
Sbjct 21308602 AGCCTTTGCCGCGGTGGAGGGAATCTTCTTTTCTGGTTCTTTCGCGTCGATATTCTGGCT 21308543
Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832
|| ||||| || || ||||| || || ||||||| || ||||| ||
Sbjct 21308542 GAAGAAGCGAGGACTTATGCCTGGCCTCACGTTTTCCAATGAGCTTAT 21308495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569845646926160
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