Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028113.1 Length=35685 Score E Sequences producing significant alignments: (Bits) Value seq4931 304 3e-78 >seq4931 Length=27746 Score = 304 bits (336), Expect = 3e-78 Identities = 865/1311 (66%), Gaps = 24/1311 (2%) Strand=Plus/Plus Query 19577 GGTGGTCTCCCGACGTCATGGACAACATTAACCCCTTTAACCACCACCGCAACGCGGGCC 19636 ||||||| || || ||||||| |||| || ||||| || ||| | || | || Sbjct 16731 GGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTT 16790 Query 19637 TGCGCTACCGTTCCATGTTGCTGGGCAACGGACGTTACGTGCCCTTCCACATCCAGGTGC 19696 || | ||| | || | | | || || || || || | |||| || || ||||| | Sbjct 16791 TGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTC 16850 Query 19697 CCCAAAAGTTTTTCGCCATTAAAAACCTGCTCCTCCTCCCCGGTTCCTACACATACGAGT 19756 | ||||||||||| || |||||| |||| || || || || || |||| ||||| | Sbjct 16851 CGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAAT 16910 Query 19757 GGAACTTCCGCAAGGACGTTAACATGATCCTGCAGAGCACGCTGGGCAACGACCTGCGCG 19816 || || | || || || |||||||| ||||||| || || ||||| || ||| | | Sbjct 16911 GGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGG 16970 Query 19817 TGGACGGGGCCACCGTTCGCTTCGATAGCATTAACCTCTACGCCAACTTTTTCCCCATGG 19876 |||||| || | || || || ||||||| ||| | || | || || || ||| Sbjct 16971 AGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGT 17030 Query 19877 CGCACAACACCGCCTCCACCTTGGAAGCCATGCTGCGCAACGACACCAACGATCAGTCGT 19936 | || ||||| || || || ||||| | ||||| ||||| || ||||||||||| | Sbjct 17031 CTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCT 17090 Query 19937 TCAACGACTACCTCTGCGCGGCCAACATGCTCTACCCCAT--CCCCGC--CAACGCCACC 19992 || |||||| || | | | |||||||| || | || | |||| ||| || Sbjct 17091 TCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAA----ACA 17146 Query 19993 AGCGTGCCCATTTCCATTCCCTCCCGCAACTGGGCCGCCTTCCGGGGCTGGAGCTTTACT 20052 | ||||| || || ||||| | | || ||||| ||||| | || ||| |||||| Sbjct 17147 ACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACT 17206 Query 20053 CGCCTCAAAACCA-AAGAGACCCCCGCCTTGGGCTCGGGTTTCGACCCCTACTTTGTTTA 20111 | || ||||| | | || || || || | ||||| | || ||||| |||||| || Sbjct 17207 AGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTA 17265 Query 20112 CTCGGGCACCATCCCCTACCTGGACGGCACCTTCTACCTCAACCACACCTTTAAAAAGGT 20171 ||||||| | ||||| || ||| | ||||| || | ||||| | | |||||| Sbjct 17266 CTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGT 17325 Query 20172 TTCCATCATGTTTGACTCCTCGGTCAGCTGGCCCGGCAACGACCGCCTCCTCACCCCCAA 20231 |||| |||||| || || || || ||||| || || ||| | || | | || || Sbjct 17326 GGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAA 17385 Query 20232 CGAGTTTGAGATTAAGCGGTCCGTGGACGGGGAGGGCTACAACGTGGCTCAGTGTAACAT 20291 || ||| | || || | ||||||| ||| ||||| ||| ||||| | | || Sbjct 17386 TGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAAT 17445 Query 20292 GACCAAGGACTGGTTTCTAATCCAGATGCTCAGCCACTACAACATCGGCTTCCAGGGCTT 20351 || ||||| |||| | | || || |||||| |||||||| ||||| | ||| || || Sbjct 17446 TACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTT 17505 Query 20352 TTACGTCCCCGAGGGCTACAAGGACCGCATGTACTCCTTCTTTAGAAACTTTCAGCCCAT 20411 | || | ||| | || || || | |||| ||||| || ||||| ||| | ||||| Sbjct 17506 TCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCAT 17565 Query 20412 GAGTCGGCAGGTGGTCGACACCGTCAACTACGCCGACTA-CAAAGAGGTGAACTTGCCCT 20470 | || | || || || || | | || | | || ||| | || ||| | Sbjct 17566 GTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTT-AAAT 17624 Query 20471 ATCAGCACAACAACTCGGGCTTTGTGGGTTA-CATGGGCCCCACCATGCGCG--AGGGAC 20527 ||||||| || || || || ||| | |||| || | || ||| | || | Sbjct 17625 ATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACC---CTTTGGGCGACAAGGCC 17681 Query 20528 AGGCCTATCCGGCCAACTTTCCCTACCCCCTTATCGGACCCACCGCCGTGCCCAGCC-TC 20586 | | ||||| |||| || | ||| || |||||| || | | | | || | Sbjct 17682 ATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGA-GAACAGGCAGGTAAAACCATT 17740 Query 20587 ACGCAGAAAAAGTTTCTTTGCGACCGCGTCATGTGGCGTATCCCGTTCTCCAGCAACTTC 20646 || |||| ||| ||| | || ||| | ||||| | || ||||||||| |||||| Sbjct 17741 ACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTT 17800 Query 20647 ATGTCCATGGGGGCGCTCACGGACCTCGGGCAGAACATGCTCTACGCCAACTCGGCGCAC 20706 ||||||||||| | || || || || || || || |||| || || || || || || Sbjct 17801 ATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCAT 17860 Query 20707 GCGCTGGACATGACCTTTGAGGTGGACCCCATGGATGAGCCCACCCTTCTCTATG-TTCT 20765 || | |||||||| | || || || | ||||| || || || |||| ||| | || Sbjct 17861 GCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTC-ATGATGCT 17919 Query 20766 GTTTGAAGTTTTCGACGTGGTGC-GCATCCACCAGCCGCATCGCGGCGTCATCGAGGCCG 20824 |||||||| || ||| | |||| | | || ||||| || || || ||||| || | Sbjct 17920 ATTTGAAGTATTTGACAT-GTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTA 17978 Query 20825 TCTACCTTCGCACGCCCTTCTCGGCCGGCAACGCCACCACCTAAACATGGG 20875 | || || | || ||||| ||||| || |||||| | || |||| ||||| Sbjct 17979 TTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAATATGGG 18029 Score = 176 bits (194), Expect = 1e-39 Identities = 284/405 (70%), Gaps = 14/405 (3%) Strand=Plus/Plus Query 18865 CTTTATGCAGAAGATGTTAACTTAGAAGCTCCCGATACTCATTTAGTGTTTAA-GCCTGA 18923 ||||||||||||||| | | || ||||||| |||||||| ||||||| || || | Sbjct 16040 CTTTATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGCATC- 16098 Query 18924 CGTTCCAACTGGCACTACAAACTCCGAGGCTCTTT---TAGCTCAACAATCAGCTCCCAA 18980 ||| | |||| | ||| || ||||| | ||||| ||| || || || Sbjct 16099 ---TCC--CGGGCATGAAAAA----GACTCTCTTGCCCTCGCTCAGCAAAGCGCGCCAAA 16149 Query 18981 CCGTGCTAATTACATTGGGTTCAGAGACAACTTTATTGGCTTAATGTATTACAACAGTAC 19040 | | | ||||| || || || || || |||||||| || ||||||| ||| ||||||| Sbjct 16150 CAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAA 16209 Query 19041 TGGAAACATGGGCGTGCTGGCGGGGCAGGCTTCTCAGCTAAATGCCGTGGTGGACCTCCA 19100 | | || |||| || | || || || | || ||||| ||||| || | ||||| || Sbjct 16210 TAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCA 16269 Query 19101 GGACAGAAACACAGAGCTGTCCTATCAGCTTATGCTAGATTCTATTGGCGACCGCAGTCG 19160 |||||||| ||||| |||| |||||||||||| ||||| | | ||| | | ||| Sbjct 16270 AGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCG 16329 Query 19161 CTATTTCTCTATGTGGAACCAGGCCGTGGACAGTTATGACCCCGATGTAAGAATTATTGA 19220 |||| | ||||||| || |||||||| ||||| || || || |||| || || Sbjct 16330 ATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGA 16389 Query 19221 AAATCATGGCGTGGAGGACGAACTGCCCAACTACTGCTTTCCTTT 19265 ||| ||| || || |||||||| || || || |||||||| || Sbjct 16390 CAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTT 16434 Score = 120 bits (132), Expect = 7e-23 Identities = 248/367 (68%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 4079 GGGGTGGTGTTGTAAATGATCCAGTCGTAAGCGGGCTTTTGGGCGTGGTGGTGGAAGATG 4138 ||||||||| |||| | |||||| || |||| | | | || |||| | ||||| Sbjct 3622 GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATGGTAGGCAAAGATA 3681 Query 4139 TCCTTTAGCAGGAGACTAATGGCTAGTGGGAGCCCCTTGGTGTAGGTGTTAACAAAGCGG 4198 || |||| | || | || |||| || || || || || || || |||| ||| | | Sbjct 3682 TCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTG 3741 Query 4199 TTGAGCTGGGAGGGGTGCATGCGGGGGGAGATAATGTGCATTTTGGCCTGGATTTTCAGG 4258 || ||||| | ||| ||||| |||| | || || ||| || || ||||| || Sbjct 3742 TTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGT 3801 Query 4259 TTGGCGATGTTGCCCCCCAGGTCCCGACGCGGGTTCATGTTGTGGAGCACCACCAGCACG 4318 ||| || || || | | || ||||||||||| || || | ||||| | || Sbjct 3802 GTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAGA 3861 Query 4319 GTGTACCCGGTACAGCGGGGAAACTTGTCATGCAGTTTGGAGGGAAAAGCGTGAAAAAAT 4378 ||||||| | || |||| | || ||| ||||| || ||||| |||||||||||| Sbjct 3862 TAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAAT 3921 Query 4379 TTGG--AGACGCCCTTGTGcccccccAGGTTTTCCATGCACTCGTCCATAATAATGGCAA 4436 || | | | | | ||| ||| || | |||||||| ||||| || || |||||||| | Sbjct 3922 TTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTA 3979 Query 4437 TGGGGCC 4443 |||| || Sbjct 3980 TGGGTCC 3986 Score = 120 bits (132), Expect = 7e-23 Identities = 410/633 (65%), Gaps = 11/633 (2%) Strand=Plus/Plus Query 6044 AAACA--AtttttttATTGTCCAGCTTAGTGGCAAAGGACCCGTAGAGGGCGTTGGAGAG 6101 ||||| ||||||||||| || | | | ||||||||||| ||||| || ||||| || | Sbjct 5585 AAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAA 5644 Query 6102 CAGCTTGGCGATGGAACGCAGGGTCTGGTTTTTGTCGCGGTCGGCGCGCTCCTTGGCGGC 6161 ||| || |||||| ||| | || ||| | || || ||| ||| || || || Sbjct 5645 CAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGC 5704 Query 6162 AATGTTGAGCTGC-ACGTACTCGCGCGCCAGGCAGCGCCACTGCGGAAAGACGGTGGTGC 6220 || || || || ||||| || | |||| ||| ||||||| ||| || || | Sbjct 5705 TATATT-AGTGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCAAATACTGTAACTC 5763 Query 6221 GCTCGTCGGGGAGCAGACGCACGCGCCAGCCGCGGTTGTGCAGCGTCACCAGGTCGACGC 6280 |||| || |||| || | | ||| || || || |||| || | |||| | Sbjct 5764 GCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGG 5823 Query 6281 TGGTGGCGACCTCGCCGCGCAAGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCTTTGCGTG 6340 ||| || ||||| | || || || |||||||| || || |||||||| | | Sbjct 5824 ACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCG 5883 Query 6341 AACAAAAGGGGGGTAACACGTCCAGTTGGTCCTCGGGCGGGGGGTCGGCGTCGATGGTGA 6400 ||||||| || ||||| || || | | || |||| |||| ||| || || || | Sbjct 5884 AACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGCGTCAGCATCAATTACAA 5943 Query 6401 AGACGCCGGGAAGCAAGTGGGAGTCAAAGTAGTCAATGGGAACGGATGGCTGGTTG-AGG 6459 | | | || | || | | |||||| ||| ||| | | ||||| | Sbjct 5944 CAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCA-----CCGGTTGCAAA 5998 Query 6460 GCGCGCTGCC-AGTTTTGGGCGGCCCAGGCCCGTTCCAAGGGATTCAGCGGAGGGCCCCA 6518 ||| || | | | | ||| || | || |||||||| || || ||||| | Sbjct 5999 GCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAA 6058 Query 6519 GGGCATGGGGTGGGTGAGGGCAGAGGCGTACATGCCGCAGATGTCGTAAACGTAGAGGGG 6578 ||||||||| || || | || ||| ||||| ||| | || || ||||| || | || Sbjct 6059 GGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCATAAACATAAATAGG 6118 Query 6579 CTCCTCGAGAACTCCGATGTAGGTGGGGTAGCAGCGCCCTCCGCGAATACTGGCGCGCAC 6638 ||||| | ||| || ||||| ||||||||||| || || || | || || | | || Sbjct 6119 TTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTAC 6178 Query 6639 GTAATCGTACATCTCGTGCGAGGGGGCCAGCAG 6671 |||| || || ||||| || |||||||| || Sbjct 6179 AAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211 Score = 102 bits (112), Expect = 2e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 18088 AAGATGGCCACCCCCTCCATGATGCCCCAGTGGTCGTACATGCACATCGCCGGTCAGGAC 18147 ||||||||||| ||||| ||| | || || ||||| ||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18148 GCCTCGGAGTACCTGAGCCCCGGCCTGGTG-CAGTTTGCGCGGGCCACGGACACGTACTT 18206 || || || || | | | || || | ||| || ||||| | || || || |||||||| Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 18207 TAGCCTGGGCAACAAGTTTCGCAACCCCACGGTGGCGCCGACCCACGACGTGACCACGGA 18266 | ||| || | || ||| | || || ||||| |||||||| ||||| || || ||||| Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 18267 CCGTTCGCAG 18276 | |||||| Sbjct 15490 AAGATCGCAG 15499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113982090474902