Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_028113.1
Length=35685
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 304 3e-78
>seq4931
Length=27746
Score = 304 bits (336), Expect = 3e-78
Identities = 865/1311 (66%), Gaps = 24/1311 (2%)
Strand=Plus/Plus
Query 19577 GGTGGTCTCCCGACGTCATGGACAACATTAACCCCTTTAACCACCACCGCAACGCGGGCC 19636
||||||| || || ||||||| |||| || ||||| || ||| | || | ||
Sbjct 16731 GGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTT 16790
Query 19637 TGCGCTACCGTTCCATGTTGCTGGGCAACGGACGTTACGTGCCCTTCCACATCCAGGTGC 19696
|| | ||| | || | | | || || || || || | |||| || || ||||| |
Sbjct 16791 TGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTC 16850
Query 19697 CCCAAAAGTTTTTCGCCATTAAAAACCTGCTCCTCCTCCCCGGTTCCTACACATACGAGT 19756
| ||||||||||| || |||||| |||| || || || || || |||| ||||| |
Sbjct 16851 CGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAAT 16910
Query 19757 GGAACTTCCGCAAGGACGTTAACATGATCCTGCAGAGCACGCTGGGCAACGACCTGCGCG 19816
|| || | || || || |||||||| ||||||| || || ||||| || ||| | |
Sbjct 16911 GGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGG 16970
Query 19817 TGGACGGGGCCACCGTTCGCTTCGATAGCATTAACCTCTACGCCAACTTTTTCCCCATGG 19876
|||||| || | || || || ||||||| ||| | || | || || || |||
Sbjct 16971 AGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGT 17030
Query 19877 CGCACAACACCGCCTCCACCTTGGAAGCCATGCTGCGCAACGACACCAACGATCAGTCGT 19936
| || ||||| || || || ||||| | ||||| ||||| || ||||||||||| |
Sbjct 17031 CTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCT 17090
Query 19937 TCAACGACTACCTCTGCGCGGCCAACATGCTCTACCCCAT--CCCCGC--CAACGCCACC 19992
|| |||||| || | | | |||||||| || | || | |||| ||| ||
Sbjct 17091 TCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCCGCATCAA----ACA 17146
Query 19993 AGCGTGCCCATTTCCATTCCCTCCCGCAACTGGGCCGCCTTCCGGGGCTGGAGCTTTACT 20052
| ||||| || || ||||| | | || ||||| ||||| | || ||| ||||||
Sbjct 17147 ACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACT 17206
Query 20053 CGCCTCAAAACCA-AAGAGACCCCCGCCTTGGGCTCGGGTTTCGACCCCTACTTTGTTTA 20111
| || ||||| | | || || || || | ||||| | || ||||| |||||| ||
Sbjct 17207 AGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTA 17265
Query 20112 CTCGGGCACCATCCCCTACCTGGACGGCACCTTCTACCTCAACCACACCTTTAAAAAGGT 20171
||||||| | ||||| || ||| | ||||| || | ||||| | | ||||||
Sbjct 17266 CTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGT 17325
Query 20172 TTCCATCATGTTTGACTCCTCGGTCAGCTGGCCCGGCAACGACCGCCTCCTCACCCCCAA 20231
|||| |||||| || || || || ||||| || || ||| | || | | || ||
Sbjct 17326 GGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAA 17385
Query 20232 CGAGTTTGAGATTAAGCGGTCCGTGGACGGGGAGGGCTACAACGTGGCTCAGTGTAACAT 20291
|| ||| | || || | ||||||| ||| ||||| ||| ||||| | | ||
Sbjct 17386 TGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAAT 17445
Query 20292 GACCAAGGACTGGTTTCTAATCCAGATGCTCAGCCACTACAACATCGGCTTCCAGGGCTT 20351
|| ||||| |||| | | || || |||||| |||||||| ||||| | ||| || ||
Sbjct 17446 TACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTT 17505
Query 20352 TTACGTCCCCGAGGGCTACAAGGACCGCATGTACTCCTTCTTTAGAAACTTTCAGCCCAT 20411
| || | ||| | || || || | |||| ||||| || ||||| ||| | |||||
Sbjct 17506 TCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCAT 17565
Query 20412 GAGTCGGCAGGTGGTCGACACCGTCAACTACGCCGACTA-CAAAGAGGTGAACTTGCCCT 20470
| || | || || || || | | || | | || ||| | || ||| |
Sbjct 17566 GTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTT-AAAT 17624
Query 20471 ATCAGCACAACAACTCGGGCTTTGTGGGTTA-CATGGGCCCCACCATGCGCG--AGGGAC 20527
||||||| || || || || ||| | |||| || | || ||| | || |
Sbjct 17625 ATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACC---CTTTGGGCGACAAGGCC 17681
Query 20528 AGGCCTATCCGGCCAACTTTCCCTACCCCCTTATCGGACCCACCGCCGTGCCCAGCC-TC 20586
| | ||||| |||| || | ||| || |||||| || | | | | || |
Sbjct 17682 ATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGA-GAACAGGCAGGTAAAACCATT 17740
Query 20587 ACGCAGAAAAAGTTTCTTTGCGACCGCGTCATGTGGCGTATCCCGTTCTCCAGCAACTTC 20646
|| |||| ||| ||| | || ||| | ||||| | || ||||||||| ||||||
Sbjct 17741 ACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTT 17800
Query 20647 ATGTCCATGGGGGCGCTCACGGACCTCGGGCAGAACATGCTCTACGCCAACTCGGCGCAC 20706
||||||||||| | || || || || || || || |||| || || || || || ||
Sbjct 17801 ATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCAT 17860
Query 20707 GCGCTGGACATGACCTTTGAGGTGGACCCCATGGATGAGCCCACCCTTCTCTATG-TTCT 20765
|| | |||||||| | || || || | ||||| || || || |||| ||| | ||
Sbjct 17861 GCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTC-ATGATGCT 17919
Query 20766 GTTTGAAGTTTTCGACGTGGTGC-GCATCCACCAGCCGCATCGCGGCGTCATCGAGGCCG 20824
|||||||| || ||| | |||| | | || ||||| || || || ||||| || |
Sbjct 17920 ATTTGAAGTATTTGACAT-GTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTA 17978
Query 20825 TCTACCTTCGCACGCCCTTCTCGGCCGGCAACGCCACCACCTAAACATGGG 20875
| || || | || ||||| ||||| || |||||| | || |||| |||||
Sbjct 17979 TTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAATATGGG 18029
Score = 176 bits (194), Expect = 1e-39
Identities = 284/405 (70%), Gaps = 14/405 (3%)
Strand=Plus/Plus
Query 18865 CTTTATGCAGAAGATGTTAACTTAGAAGCTCCCGATACTCATTTAGTGTTTAA-GCCTGA 18923
||||||||||||||| | | || ||||||| |||||||| ||||||| || || |
Sbjct 16040 CTTTATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGCATC- 16098
Query 18924 CGTTCCAACTGGCACTACAAACTCCGAGGCTCTTT---TAGCTCAACAATCAGCTCCCAA 18980
||| | |||| | ||| || ||||| | ||||| ||| || || ||
Sbjct 16099 ---TCC--CGGGCATGAAAAA----GACTCTCTTGCCCTCGCTCAGCAAAGCGCGCCAAA 16149
Query 18981 CCGTGCTAATTACATTGGGTTCAGAGACAACTTTATTGGCTTAATGTATTACAACAGTAC 19040
| | | ||||| || || || || || |||||||| || ||||||| ||| |||||||
Sbjct 16150 CAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAA 16209
Query 19041 TGGAAACATGGGCGTGCTGGCGGGGCAGGCTTCTCAGCTAAATGCCGTGGTGGACCTCCA 19100
| | || |||| || | || || || | || ||||| ||||| || | ||||| ||
Sbjct 16210 TAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCA 16269
Query 19101 GGACAGAAACACAGAGCTGTCCTATCAGCTTATGCTAGATTCTATTGGCGACCGCAGTCG 19160
|||||||| ||||| |||| |||||||||||| ||||| | | ||| | | |||
Sbjct 16270 AGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCG 16329
Query 19161 CTATTTCTCTATGTGGAACCAGGCCGTGGACAGTTATGACCCCGATGTAAGAATTATTGA 19220
|||| | ||||||| || |||||||| ||||| || || || |||| || ||
Sbjct 16330 ATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGA 16389
Query 19221 AAATCATGGCGTGGAGGACGAACTGCCCAACTACTGCTTTCCTTT 19265
||| ||| || || |||||||| || || || |||||||| ||
Sbjct 16390 CAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTT 16434
Score = 120 bits (132), Expect = 7e-23
Identities = 248/367 (68%), Gaps = 4/367 (1%)
Strand=Plus/Plus
Query 4079 GGGGTGGTGTTGTAAATGATCCAGTCGTAAGCGGGCTTTTGGGCGTGGTGGTGGAAGATG 4138
||||||||| |||| | |||||| || |||| | | | || |||| | |||||
Sbjct 3622 GGGGTGGTGGTGTACACGATCCAATCATAAGATGAGTGTAAGGAATGGTAGGCAAAGATA 3681
Query 4139 TCCTTTAGCAGGAGACTAATGGCTAGTGGGAGCCCCTTGGTGTAGGTGTTAACAAAGCGG 4198
|| |||| | || | || |||| || || || || || || || |||| ||| | |
Sbjct 3682 TCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAATCTG 3741
Query 4199 TTGAGCTGGGAGGGGTGCATGCGGGGGGAGATAATGTGCATTTTGGCCTGGATTTTCAGG 4258
|| ||||| | ||| ||||| |||| | || || ||| || || ||||| ||
Sbjct 3742 TTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTTAGT 3801
Query 4259 TTGGCGATGTTGCCCCCCAGGTCCCGACGCGGGTTCATGTTGTGGAGCACCACCAGCACG 4318
||| || || || | | || ||||||||||| || || | ||||| | ||
Sbjct 3802 GTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAACAGA 3861
Query 4319 GTGTACCCGGTACAGCGGGGAAACTTGTCATGCAGTTTGGAGGGAAAAGCGTGAAAAAAT 4378
||||||| | || |||| | || ||| ||||| || ||||| ||||||||||||
Sbjct 3862 TAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAAAAT 3921
Query 4379 TTGG--AGACGCCCTTGTGcccccccAGGTTTTCCATGCACTCGTCCATAATAATGGCAA 4436
|| | | | | | ||| ||| || | |||||||| ||||| || || |||||||| |
Sbjct 3922 TTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGGCTA 3979
Query 4437 TGGGGCC 4443
|||| ||
Sbjct 3980 TGGGTCC 3986
Score = 120 bits (132), Expect = 7e-23
Identities = 410/633 (65%), Gaps = 11/633 (2%)
Strand=Plus/Plus
Query 6044 AAACA--AtttttttATTGTCCAGCTTAGTGGCAAAGGACCCGTAGAGGGCGTTGGAGAG 6101
||||| ||||||||||| || | | | ||||||||||| ||||| || ||||| || |
Sbjct 5585 AAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAA 5644
Query 6102 CAGCTTGGCGATGGAACGCAGGGTCTGGTTTTTGTCGCGGTCGGCGCGCTCCTTGGCGGC 6161
||| || |||||| ||| | || ||| | || || ||| ||| || || ||
Sbjct 5645 CAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGC 5704
Query 6162 AATGTTGAGCTGC-ACGTACTCGCGCGCCAGGCAGCGCCACTGCGGAAAGACGGTGGTGC 6220
|| || || || ||||| || | |||| ||| ||||||| ||| || || |
Sbjct 5705 TATATT-AGTGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCAAATACTGTAACTC 5763
Query 6221 GCTCGTCGGGGAGCAGACGCACGCGCCAGCCGCGGTTGTGCAGCGTCACCAGGTCGACGC 6280
|||| || |||| || | | ||| || || || |||| || | |||| |
Sbjct 5764 GCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGG 5823
Query 6281 TGGTGGCGACCTCGCCGCGCAAGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCTTTGCGTG 6340
||| || ||||| | || || || |||||||| || || |||||||| | |
Sbjct 5824 ACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCG 5883
Query 6341 AACAAAAGGGGGGTAACACGTCCAGTTGGTCCTCGGGCGGGGGGTCGGCGTCGATGGTGA 6400
||||||| || ||||| || || | | || |||| |||| ||| || || || |
Sbjct 5884 AACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGCGTCAGCATCAATTACAA 5943
Query 6401 AGACGCCGGGAAGCAAGTGGGAGTCAAAGTAGTCAATGGGAACGGATGGCTGGTTG-AGG 6459
| | | || | || | | |||||| ||| ||| | | ||||| |
Sbjct 5944 CAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCA-----CCGGTTGCAAA 5998
Query 6460 GCGCGCTGCC-AGTTTTGGGCGGCCCAGGCCCGTTCCAAGGGATTCAGCGGAGGGCCCCA 6518
||| || | | | | ||| || | || |||||||| || || ||||| |
Sbjct 5999 GCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAA 6058
Query 6519 GGGCATGGGGTGGGTGAGGGCAGAGGCGTACATGCCGCAGATGTCGTAAACGTAGAGGGG 6578
||||||||| || || | || ||| ||||| ||| | || || ||||| || | ||
Sbjct 6059 GGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATCATAAACATAAATAGG 6118
Query 6579 CTCCTCGAGAACTCCGATGTAGGTGGGGTAGCAGCGCCCTCCGCGAATACTGGCGCGCAC 6638
||||| | ||| || ||||| ||||||||||| || || || | || || | | ||
Sbjct 6119 TTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTAC 6178
Query 6639 GTAATCGTACATCTCGTGCGAGGGGGCCAGCAG 6671
|||| || || ||||| || |||||||| ||
Sbjct 6179 AAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211
Score = 102 bits (112), Expect = 2e-17
Identities = 138/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 18088 AAGATGGCCACCCCCTCCATGATGCCCCAGTGGTCGTACATGCACATCGCCGGTCAGGAC 18147
||||||||||| ||||| ||| | || || ||||| ||| | || ||||| || || ||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 18148 GCCTCGGAGTACCTGAGCCCCGGCCTGGTG-CAGTTTGCGCGGGCCACGGACACGTACTT 18206
|| || || || | | | || || | ||| || ||||| | || || || ||||||||
Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429
Query 18207 TAGCCTGGGCAACAAGTTTCGCAACCCCACGGTGGCGCCGACCCACGACGTGACCACGGA 18266
| ||| || | || ||| | || || ||||| |||||||| ||||| || || |||||
Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Query 18267 CCGTTCGCAG 18276
| ||||||
Sbjct 15490 AAGATCGCAG 15499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113982090474902
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