Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_028238.1
Length=188534
Score E
Sequences producing significant alignments: (Bits) Value
seq190 104 3e-17
seq83 82.4 9e-11
>seq190
Length=3085523
Score = 104 bits (114), Expect = 3e-17
Identities = 204/302 (68%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694
|||||| |||||||||| | | |||| | || || || || | || ||| |||
Sbjct 695279 ACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCC 695338
Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754
|| || || | |||| || || |||||| || || | | ||| | |||||||||
Sbjct 695339 TTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCCTA 695398
Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814
|||||| |||||| ||||| || ||||||||||| || || || ||||| || ||
Sbjct 695399 TAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAA 695458
Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874
| |||| || ||||||||| | || | | | |||| ||| || ||| | ||
Sbjct 695459 CGTGGAGCTACTCTTCCATAGCACCCAGAAGAAAGAGCTATCTGAATGTCCGTCTTCACA 695518
Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGCT 22934
| ||| |||||||| |||| |||| ||| || || | || ||||| |||||
Sbjct 695519 AGGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTCCAGGTCATAGCCTGCC 695578
Query 22935 GA 22936
||
Sbjct 695579 GA 695580
>seq83
Length=9551901
Score = 82.4 bits (90), Expect = 9e-11
Identities = 197/298 (66%), Gaps = 0/298 (0%)
Strand=Plus/Minus
Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694
|||||| |||||||||| || | || | || || || || | ||||| |||
Sbjct 3111966 ACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATTACCC 3111907
Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754
|| || || | ||| || || | |||||| || || | | ||| | || |||||
Sbjct 3111906 TTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCCCCTA 3111847
Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814
|||||| || ||| ||||| || ||||||||||| || || || | ||||| || ||
Sbjct 3111846 TAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCCAGAA 3111787
Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874
| |||| || ||||||||| | || || | | |||| ||| || ||| | ||
Sbjct 3111786 CGTGGAGCTACTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCCGTCTTCACA 3111727
Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTG 22932
| ||| |||||||| |||| ||| ||| || || || || || | ||||
Sbjct 3111726 AGGGCTTTCTCCATAGGTGGTATTGTACAATCATAGGCACTGTACAGGTCGCAGCCTG 3111669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 602689260426320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |