Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq190 104 3e-17 seq83 82.4 9e-11 >seq190 Length=3085523 Score = 104 bits (114), Expect = 3e-17 Identities = 204/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| |||||||||| | | |||| | || || || || | || ||| ||| Sbjct 695279 ACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCC 695338 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | |||| || || |||||| || || | | ||| | ||||||||| Sbjct 695339 TTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCCTA 695398 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || ||||||||||| || || || ||||| || || Sbjct 695399 TAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAA 695458 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||||||| | || | | | |||| ||| || ||| | || Sbjct 695459 CGTGGAGCTACTCTTCCATAGCACCCAGAAGAAAGAGCTATCTGAATGTCCGTCTTCACA 695518 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGCT 22934 | ||| |||||||| |||| |||| ||| || || | || ||||| ||||| Sbjct 695519 AGGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTCCAGGTCATAGCCTGCC 695578 Query 22935 GA 22936 || Sbjct 695579 GA 695580 >seq83 Length=9551901 Score = 82.4 bits (90), Expect = 9e-11 Identities = 197/298 (66%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| |||||||||| || | || | || || || || | ||||| ||| Sbjct 3111966 ACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATTACCC 3111907 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | |||||| || || | | ||| | || ||||| Sbjct 3111906 TTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCCCCTA 3111847 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| || ||| ||||| || ||||||||||| || || || | ||||| || || Sbjct 3111846 TAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCCAGAA 3111787 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||||||| | || || | | |||| ||| || ||| | || Sbjct 3111786 CGTGGAGCTACTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCCGTCTTCACA 3111727 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTG 22932 | ||| |||||||| |||| ||| ||| || || || || || | |||| Sbjct 3111726 AGGGCTTTCTCCATAGGTGGTATTGTACAATCATAGGCACTGTACAGGTCGCAGCCTG 3111669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602689260426320