Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq40 248 1e-60
seq11 95.1 2e-14
>seq40
Length=15643725
Score = 248 bits (274), Expect = 1e-60
Identities = 586/880 (67%), Gaps = 9/880 (1%)
Strand=Plus/Minus
Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729
|||||||||| ||| ||||| | || || || ||||| || |||||| | || |||||
Sbjct 4999212 GCCCCTGAGCAAGGAGGAGGTGGCCTTCCCAATTGCCTATTCCATCGTGGTTCATCACAA 4999153
Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789
||| || ||| |||| | |||||| ||||||||||| |||||||| |||||||| |
Sbjct 4999152 GATTGAAATGCTCGACAGGCTCCTGCGGGCCATCTACATGCCGCAGAATTTCTACTGCAT 4999093
Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTG 13849
||||||||| || |||| || | ||| | | || || |||||| |||
Sbjct 4999092 TCACGTGGACAAGAAATCCGAGGAAGCCTTCTTAGCTGCGGTGATGGGCATCGCATCGTG 4999033
Query 13850 CTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCG 13909
||| |||||| | ||||| ||| || | ||||||||| | || ||||||||
Sbjct 4999032 TTTCAGTAACGTCTTCGTGGCCAGCCGCTTGGAGACCGTGGTGTATGCATCTTGGAGTCG 4998973
Query 13910 CGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTA 13969
|||||||| ||||||| ||||||| ||| ||| ||||| | | |||| ||
Sbjct 4998972 GGTGCAGGCAGACCTCAACTGCATGAAGGAGCTGTACGCCATGCATGCGGGCTGGAAATA 4998913
Query 13970 CCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGC 14029
| || |||| |||||||| ||||| || || | || |||||||||||||| || ||
Sbjct 4998912 CTTGATCAATCTGTGCGGCATGGATTTTCCTATTAAAACCAACCTGGAGATGGTTAGGAA 4998853
Query 14030 GCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCT 14089
|||| || | | | || | ||| |||||||| ||| ||||| ||| |||
Sbjct 4998852 GCTGCAGTCATTCAGGGGTGAAAACAACCTGGAGACAGAGAAGATGCCAGCCCATAAGGA 4998793
Query 14090 GCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAG 14149
| | | ||| || |||| || || ||| | | | ||||| || |
Sbjct 4998792 GGA---AAGGTGGAGGAAGCACTATGTCATCATGAACGGACGGATCATTAACACGGGGAC 4998736
Query 14150 GAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGT 14209
| |||| | ||||| || || || | || | || | || | ||| || |||| |||
Sbjct 4998735 GGTCAAGACACCGCCTCCCCTGAGCACACCTCTGTTCTCAGGTAGCGCCTATTTTGTGGT 4998676
Query 14210 CACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTG 14269
|| |||||| |||| ||||| | |||| |||| | | ||||| | ||
Sbjct 4998675 CAGTAGGGAGTACGTGAGATTCGTGTTAGAGGATGAGCACATCCAGAAGTTCATGGAGTG 4998616
Query 14270 GTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG 14329
| ||||||||||||| ||||| ||| |||| ||||||||| | || || || | | |
Sbjct 4998615 GGCGCAGGACACGTACAGTCCCGATGAGTACCTCTGGGCCACCATCCAAAGGAT-TCCCG 4998557
Query 14330 GACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCCAAGG 14388
| || || | | | || | ||||| ||| || |||||| ||| ||
Sbjct 4998556 AAGTGCCAGGTTCCTTGTCCTCCAGCAATAAGTATGACCTGTCTGACATGAACGCCGTGG 4998497
Query 14389 TCAGGTTCGTCAAGTGGCACTACTACGAGGGGGA--TATCAAGAAAGGGGCCCTGTACCC 14446
| |||| ||||||||||| |||| ||| || || | || | || || | |||||
Sbjct 4998496 CCCGGTTTGTCAAGTGGCAGTACTTCGAAGGCGACGTGTCCCG--CGGTGCACCCTACCC 4998439
Query 14447 GCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTG 14506
||| |||||||| | || || | |||| | ||||| |||||| |||| || |||| ||
Sbjct 4998438 GCCCTGCGACGGGGTGCATGTGCGCGCCGTGTGCATTTTCGGGGCCGGGGATTTGAACTG 4998379
Query 14507 GCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
| || || | ||| | || ||||| ||||| |||
Sbjct 4998378 GATGCTTCGCAAGCACCACTTCTTTGCCAATAAGTTTGAC 4998339
>seq11
Length=20748735
Score = 95.1 bits (104), Expect = 2e-14
Identities = 132/184 (72%), Gaps = 1/184 (1%)
Strand=Plus/Minus
Query 14275 AGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGC 14334
||||||| |||||||| || || ||| ||||||||| | ||| | | | ||| ||
Sbjct 6672083 AGGACACCTACAGCCCTGATGAATTCCTCTGGGCCACCCTTCAGCGGGCCTCCTGGATGC 6672024
Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394
|||| | ||| |||| |||||| || | ||| |||||| |||| | ||||
Sbjct 6672023 CCGGCTCAGTTCCCCCTCACCACAAGTATGATATCTCAGACATGAATGCCATTGCCAGGC 6671964
Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454
| ||||||||||| | | ||||| |||||||| ||||||| | |||| |||||||
Sbjct 6671963 TGGTCAAGTGGCAGGAACATGAGGGTGATATCAATGAAGGGGCACCTTACCAGCCTTGC- 6671905
Query 14455 ACGG 14458
||||
Sbjct 6671904 ACGG 6671901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658202385191680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |