Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq40 248 1e-60 seq11 95.1 2e-14 >seq40 Length=15643725 Score = 248 bits (274), Expect = 1e-60 Identities = 586/880 (67%), Gaps = 9/880 (1%) Strand=Plus/Minus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||||||| ||| ||||| | || || || ||||| || |||||| | || ||||| Sbjct 4999212 GCCCCTGAGCAAGGAGGAGGTGGCCTTCCCAATTGCCTATTCCATCGTGGTTCATCACAA 4999153 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||| || ||| |||| | |||||| ||||||||||| |||||||| |||||||| | Sbjct 4999152 GATTGAAATGCTCGACAGGCTCCTGCGGGCCATCTACATGCCGCAGAATTTCTACTGCAT 4999093 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTG 13849 ||||||||| || |||| || | ||| | | || || |||||| ||| Sbjct 4999092 TCACGTGGACAAGAAATCCGAGGAAGCCTTCTTAGCTGCGGTGATGGGCATCGCATCGTG 4999033 Query 13850 CTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCG 13909 ||| |||||| | ||||| ||| || | ||||||||| | || |||||||| Sbjct 4999032 TTTCAGTAACGTCTTCGTGGCCAGCCGCTTGGAGACCGTGGTGTATGCATCTTGGAGTCG 4998973 Query 13910 CGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTA 13969 |||||||| ||||||| ||||||| ||| ||| ||||| | | |||| || Sbjct 4998972 GGTGCAGGCAGACCTCAACTGCATGAAGGAGCTGTACGCCATGCATGCGGGCTGGAAATA 4998913 Query 13970 CCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGC 14029 | || |||| |||||||| ||||| || || | || |||||||||||||| || || Sbjct 4998912 CTTGATCAATCTGTGCGGCATGGATTTTCCTATTAAAACCAACCTGGAGATGGTTAGGAA 4998853 Query 14030 GCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCT 14089 |||| || | | | || | ||| |||||||| ||| ||||| ||| ||| Sbjct 4998852 GCTGCAGTCATTCAGGGGTGAAAACAACCTGGAGACAGAGAAGATGCCAGCCCATAAGGA 4998793 Query 14090 GCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAG 14149 | | | ||| || |||| || || ||| | | | ||||| || | Sbjct 4998792 GGA---AAGGTGGAGGAAGCACTATGTCATCATGAACGGACGGATCATTAACACGGGGAC 4998736 Query 14150 GAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGT 14209 | |||| | ||||| || || || | || | || | || | ||| || |||| ||| Sbjct 4998735 GGTCAAGACACCGCCTCCCCTGAGCACACCTCTGTTCTCAGGTAGCGCCTATTTTGTGGT 4998676 Query 14210 CACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTG 14269 || |||||| |||| ||||| | |||| |||| | | ||||| | || Sbjct 4998675 CAGTAGGGAGTACGTGAGATTCGTGTTAGAGGATGAGCACATCCAGAAGTTCATGGAGTG 4998616 Query 14270 GTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG 14329 | ||||||||||||| ||||| ||| |||| ||||||||| | || || || | | | Sbjct 4998615 GGCGCAGGACACGTACAGTCCCGATGAGTACCTCTGGGCCACCATCCAAAGGAT-TCCCG 4998557 Query 14330 GACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCCAAGG 14388 | || || | | | || | ||||| ||| || |||||| ||| || Sbjct 4998556 AAGTGCCAGGTTCCTTGTCCTCCAGCAATAAGTATGACCTGTCTGACATGAACGCCGTGG 4998497 Query 14389 TCAGGTTCGTCAAGTGGCACTACTACGAGGGGGA--TATCAAGAAAGGGGCCCTGTACCC 14446 | |||| ||||||||||| |||| ||| || || | || | || || | ||||| Sbjct 4998496 CCCGGTTTGTCAAGTGGCAGTACTTCGAAGGCGACGTGTCCCG--CGGTGCACCCTACCC 4998439 Query 14447 GCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTG 14506 ||| |||||||| | || || | |||| | ||||| |||||| |||| || |||| || Sbjct 4998438 GCCCTGCGACGGGGTGCATGTGCGCGCCGTGTGCATTTTCGGGGCCGGGGATTTGAACTG 4998379 Query 14507 GCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | || || | ||| | || ||||| ||||| ||| Sbjct 4998378 GATGCTTCGCAAGCACCACTTCTTTGCCAATAAGTTTGAC 4998339 >seq11 Length=20748735 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/184 (72%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 14275 AGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGC 14334 ||||||| |||||||| || || ||| ||||||||| | ||| | | | ||| || Sbjct 6672083 AGGACACCTACAGCCCTGATGAATTCCTCTGGGCCACCCTTCAGCGGGCCTCCTGGATGC 6672024 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 |||| | ||| |||| |||||| || | ||| |||||| |||| | |||| Sbjct 6672023 CCGGCTCAGTTCCCCCTCACCACAAGTATGATATCTCAGACATGAATGCCATTGCCAGGC 6671964 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||||| | | ||||| |||||||| ||||||| | |||| ||||||| Sbjct 6671963 TGGTCAAGTGGCAGGAACATGAGGGTGATATCAATGAAGGGGCACCTTACCAGCCTTGC- 6671905 Query 14455 ACGG 14458 |||| Sbjct 6671904 ACGG 6671901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658202385191680