Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq25 129 5e-25 seq228 114 1e-20 >seq25 Length=23434732 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| ||||| Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||| ||||| || || ||||| || | | Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAG 21720552 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||||||||| || || || || |||||||| Sbjct 21716023 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTC 21715964 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || |||| | | || ||| |||||||||| |||| ||| || ||||| || Sbjct 21715963 CCCTTCTTTTCGGGCAGAAAATCCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATC 21715904 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| || ||||||| ||||||||| || Sbjct 21715903 CCAGATTTTCACTCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 21715856 >seq228 Length=2243194 Score = 114 bits (126), Expect = 1e-20 Identities = 187/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 110371 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 110430 ||||| ||||||||| ||||| || || || || || || || |||| || || Sbjct 137370 GCCAGAAAATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTACTAAGAACTATATTAATT 137429 Query 110431 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 110490 ||||| | | ||||| |||||| || || ||||||||||| || || |||||||| ||| Sbjct 137430 CTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATC 137489 Query 110491 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAA 110550 |||| ||||| || ||| |||| ||| || | ||||| ||| || | || || Sbjct 137490 ACCAGATTCTGTTTACCTTCTACTGTAGAGGTTGTGGTCATTCTTCGGAAATACTTGAAT 137549 Query 110551 TCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGT-C 110609 || | | || || |||| || || | || || || ||||||||||||| | Sbjct 137550 TCACTCCTGAG------CGGGGGCCAGGGGAGGGCGCCATTTTTGCCGATGCCCATGTGC 137603 Query 110610 TGGACACGCGGCCACGATACCGTTCAG 110636 ||| || |||||||||| | |||||| Sbjct 137604 TGG-GACACGGCCACGATGCAGTTCAG 137629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405987570261756