Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq25 129 5e-25
seq228 114 1e-20
>seq25
Length=23434732
Score = 129 bits (142), Expect = 5e-25
Identities = 127/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||
Sbjct 21720715 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 21720656
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || ||||||||||| ||||| || || ||||| || | |
Sbjct 21720655 ACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 21720596
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|| || ||||| || | ||| ||||| ||||| || ||||| ||
Sbjct 21720595 ACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAG 21720552
Score = 118 bits (130), Expect = 9e-22
Identities = 127/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| |||||||| ||||||||||||||||| || || || || ||||||||
Sbjct 21716023 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTC 21715964
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| |||| | | || ||| |||||||||| |||| ||| || ||||| ||
Sbjct 21715963 CCCTTCTTTTCGGGCAGAAAATCCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATC 21715904
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||| || || ||||| ||| || ||||||| ||||||||| ||
Sbjct 21715903 CCAGATTTTCACTCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 21715856
>seq228
Length=2243194
Score = 114 bits (126), Expect = 1e-20
Identities = 187/267 (70%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 110371 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 110430
||||| ||||||||| ||||| || || || || || || || |||| || ||
Sbjct 137370 GCCAGAAAATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTACTAAGAACTATATTAATT 137429
Query 110431 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 110490
||||| | | ||||| |||||| || || ||||||||||| || || |||||||| |||
Sbjct 137430 CTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATC 137489
Query 110491 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAA 110550
|||| ||||| || ||| |||| ||| || | ||||| ||| || | || ||
Sbjct 137490 ACCAGATTCTGTTTACCTTCTACTGTAGAGGTTGTGGTCATTCTTCGGAAATACTTGAAT 137549
Query 110551 TCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGT-C 110609
|| | | || || |||| || || | || || || ||||||||||||| |
Sbjct 137550 TCACTCCTGAG------CGGGGGCCAGGGGAGGGCGCCATTTTTGCCGATGCCCATGTGC 137603
Query 110610 TGGACACGCGGCCACGATACCGTTCAG 110636
||| || |||||||||| | ||||||
Sbjct 137604 TGG-GACACGGCCACGATGCAGTTCAG 137629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405987570261756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |