Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq66 113 4e-20 seq147 109 5e-19 seq36 91.5 1e-13 >seq66 Length=5789316 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || | || ||||| || Sbjct 2649440 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 2649499 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| || ||||||||||| ||||| Sbjct 2649500 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCAG 2649559 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| || ||||||| | ||| | || || |||||| Sbjct 2649560 CAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649619 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||| | ||| | || |||||||| Sbjct 2649620 ATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTCTCCGAGGTGGCAT 2649669 >seq147 Length=2532799 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | ||||| || || ||||| || Sbjct 2383949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 2384008 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||| ||||| || ||||| || Sbjct 2384009 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 2384068 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || ||||||| | || |||| || |||||| Sbjct 2384069 CAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2384128 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| ||| | || ||||| | ||| | |||||||| Sbjct 2384129 ATCCAGAAAGAGTCCACCCTGCACCTGGTTCTCCGTCTCAGGGGTGGC 2384176 >seq36 Length=17049061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || || |||||||||||| | |||| || || ||||| || Sbjct 7363035 ATGCAGATCTTCATGAAGACCCTGACCGGCAAGACCATTATCCTGGAGGTGGAGCCCATT 7362976 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||| ||||| || || || || Sbjct 7362975 GATACCATTGAGAAAGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCAG 7362916 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || ||||||| | || |||| || |||||| Sbjct 7362915 CAGAGGCTGATCTTCGCAGGCAAGCAGGTGGAAGATGGCCACACTCTTTCTGACTACAAC 7362856 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| ||| | | | ||||| | ||| | |||| ||| Sbjct 7362855 ATCCAGAAAGAGTCTACCCTTCGTCTGGTTCTCCGTCTCAGGGGCGGC 7362808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434563979559360